Cow genome map

Conread name: reep13c_k20.y1

Conread position: 269-435
Cow position: chr12:48415617-48415452 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 18, 76

Conread position: 269-436
Cow position: chr12:33976099-33976264 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 119
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 18, 39

Conread position: 269-438
Cow position: chr12:29969479-29969646 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 106, 30

Conread position: 279-440
Cow position: chr12:30210391-30210552 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 285-440
Cow position: chr12:35771103-35770952 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 286-421
Cow position: chr12:34673425-34673290 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 286-434
Cow position: chr12:5714545-5714691 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 110, 0

Conread position: 286-434
Cow position: chr12:35378116-35378264 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 37, 97

Conread position: 286-436
Cow position: chr12:17879387-17879237 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 15, 111

Conread position: 286-438
Cow position: chr12:6469146-6468993 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 286-438
Cow position: chr12:44203071-44202920 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 24, 66

Conread position: 286-439
Cow position: chr12:11056791-11056944 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 108, 14

Conread position: 286-439
Cow position: chr12:18583076-18582925 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 286-439
Cow position: chr12:19261110-19261263 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 286-439
Cow position: chr12:25561287-25561437 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 13, 0

Conread position: 286-440
Cow position: chr12:5554419-5554265 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 286-440
Cow position: chr12:6485296-6485144 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 16, 63

Conread position: 286-440
Cow position: chr12:9143303-9143456 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 36, 0

Conread position: 286-440
Cow position: chr12:15122239-15122395 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 20, 33

Conread position: 286-440
Cow position: chr12:17031532-17031684 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 146, 21

Conread position: 286-440
Cow position: chr12:17269716-17269871 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 23, 0

Conread position: 286-440
Cow position: chr12:17881778-17881930 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 286-440
Cow position: chr12:18388371-18388222 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 72, 13

Conread position: 286-440
Cow position: chr12:19691317-19691165 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 18, 86

Conread position: 286-440
Cow position: chr12:20777006-20776855 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 146, 84

Conread position: 286-440
Cow position: chr12:26777275-26777122 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 15, 91

Conread position: 286-440
Cow position: chr12:27037534-27037381 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 124
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 9, 0

Conread position: 286-440
Cow position: chr12:30605248-30605097 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 286-440
Cow position: chr12:32169456-32169609 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 69, 0

Conread position: 286-440
Cow position: chr12:33319751-33319599 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 31, 0

Conread position: 286-440
Cow position: chr12:37514366-37514213 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 146, 0

Conread position: 286-440
Cow position: chr12:42685030-42684876 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 77, 69

Conread position: 286-440
Cow position: chr12:45820451-45820297 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 286-441
Cow position: chr12:5905971-5906126 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 286-441
Cow position: chr12:7884765-7884611 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 125
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 14, 0

Conread position: 286-441
Cow position: chr12:25805214-25805062 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 124
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 32, 0

Conread position: 286-441
Cow position: chr12:42879610-42879763 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 286-442
Cow position: chr12:42784224-42784383 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 114
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 85, 0

Conread position: 286-443
Cow position: chr12:6489073-6488921 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 286-443
Cow position: chr12:26223072-26222917 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 146, 48

Conread position: 286-443
Cow position: chr12:30819158-30819316 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 27, 0

Conread position: 286-444
Cow position: chr12:3371627-3371473 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 286-444
Cow position: chr12:15089430-15089588 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 18, 105

Conread position: 286-444
Cow position: chr12:18020773-18020930 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 128
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 90, 0

Conread position: 286-450
Cow position: chr12:16670182-16670345 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 137, 0

Conread position: 287-434
Cow position: chr12:15429679-15429533 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 287-437
Cow position: chr12:19507549-19507703 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 18, 0

Conread position: 287-438
Cow position: chr12:31429652-31429504 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 22, 13

Conread position: 287-439
Cow position: chr12:11659843-11659989 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 16, 106

Conread position: 287-440
Cow position: chr12:9766962-9766808 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 16, 0

Conread position: 287-440
Cow position: chr12:30170586-30170737 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 13, 0

Conread position: 287-441
Cow position: chr12:35669555-35669393 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 67, 0

Conread position: 288-434
Cow position: chr12:25917352-25917214 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 288-438
Cow position: chr12:34466087-34465937 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 19

Conread position: 288-440
Cow position: chr12:23644887-23644734 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 70, 0

Conread position: 288-440
Cow position: chr12:32714963-32715113 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 122
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 56, 0

Conread position: 288-440
Cow position: chr12:33851278-33851426 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 74, 0

Conread position: 288-440
Cow position: chr12:39465496-39465648 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 289-440
Cow position: chr12:24663034-24663183 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 289-440
Cow position: chr12:29770654-29770510 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 79, 0

Conread position: 290-439
Cow position: chr12:4768845-4768993 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 290-440
Cow position: chr12:33948823-33948973 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 290-441
Cow position: chr12:15703579-15703428 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 124
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 13, 82

Conread position: 291-440
Cow position: chr12:17252277-17252130 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 9, 0

Conread position: 291-440
Cow position: chr12:36544723-36544573 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 60, 134

Conread position: 292-444
Cow position: chr12:15530980-15531127 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 7, 0

Conread position: 293-435
Cow position: chr12:18518594-18518737 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 13, 0

Conread position: 293-440
Cow position: chr12:45092368-45092515 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 293-443
Cow position: chr12:15641184-15641035 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 122
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 72, 6

Conread position: 294-440
Cow position: chr12:7902882-7902731 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 122
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 58, 148

Conread position: 294-440
Cow position: chr12:26151537-26151391 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 138, 74

Conread position: 295-442
Cow position: chr12:46120910-46120761 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 54, 0

Conread position: 299-440
Cow position: chr12:24032424-24032565 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 300-436
Cow position: chr12:3092652-3092515 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 300-441
Cow position: chr12:12232812-12232951 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 92, 70

Conread position: 302-440
Cow position: chr12:19502497-19502359 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 302-441
Cow position: chr12:11836165-11836304 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 303-440
Cow position: chr12:5839724-5839586 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 106, 0

Conread position: 303-440
Cow position: chr12:18123601-18123738 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 303-440
Cow position: chr12:27357320-27357456 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 42, 0

Conread position: 303-440
Cow position: chr12:37170014-37169877 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 304-440
Cow position: chr12:24116429-24116294 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 19

Conread position: 304-440
Cow position: chr12:46464134-46464001 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 304-441
Cow position: chr12:19274464-19274329 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 72, 0

Conread position: 304-442
Cow position: chr12:30745653-30745787 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 48

Conread position: 305-440
Cow position: chr12:6410801-6410665 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 82, 0

Conread position: 306-440
Cow position: chr12:36261624-36261758 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 307-440
Cow position: chr12:6241255-6241388 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 307-440
Cow position: chr12:15260699-15260831 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 111
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 118, 0

Conread position: 307-440
Cow position: chr12:24167008-24166875 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 307-440
Cow position: chr12:25177660-25177529 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 315-439
Cow position: chr12:1766856-1766977 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 321-444
Cow position: chr12:45783766-45783643 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 325-440
Cow position: chr12:24437681-24437566 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 326-438
Cow position: chr12:14986704-14986815 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 106, 0

Conread position: 329-440
Cow position: chr12:29731273-29731383 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 331-440
Cow position: chr12:27572280-27572171 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 335-439
Cow position: chr12:6480604-6480708 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.