Cow genome map

Conread name: reep13c_k20.y1

Conread position: 268-440
Cow position: chr14:33751640-33751473 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 140
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 18, 0

Conread position: 269-440
Cow position: chr14:28115081-28115251 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 123, 140

Conread position: 269-442
Cow position: chr14:19372444-19372272 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 270-440
Cow position: chr14:10852133-10851966 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 143
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 130, 7

Conread position: 282-438
Cow position: chr14:4282418-4282569 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 286-410
Cow position: chr14:3162815-3162692 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 95
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 286-411
Cow position: chr14:2345156-2345031 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 286-425
Cow position: chr14:42480132-42480267 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 286-431
Cow position: chr14:3779425-3779278 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 103, 0

Conread position: 286-434
Cow position: chr14:45677319-45677171 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 34, 56

Conread position: 286-436
Cow position: chr14:16549917-16550065 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 147, 17

Conread position: 286-439
Cow position: chr14:47170267-47170417 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 286-440
Cow position: chr14:5557032-5557186 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 286-440
Cow position: chr14:11643167-11643314 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 11, 22

Conread position: 286-440
Cow position: chr14:13042843-13042693 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 112
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 286-440
Cow position: chr14:16256855-16256694 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 129
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 84, 0

Conread position: 286-440
Cow position: chr14:18345644-18345793 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 12, 0

Conread position: 286-440
Cow position: chr14:20110633-20110787 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 286-440
Cow position: chr14:25225818-25225663 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 286-440
Cow position: chr14:26433153-26433305 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 28, 21

Conread position: 286-440
Cow position: chr14:29698269-29698426 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 94, 32

Conread position: 286-440
Cow position: chr14:39778842-39778687 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 19, 0

Conread position: 286-440
Cow position: chr14:41210942-41210789 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 124
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 87, 13

Conread position: 286-440
Cow position: chr14:41486173-41486324 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 85, 0

Conread position: 286-440
Cow position: chr14:41837785-41837937 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 14, 0

Conread position: 286-441
Cow position: chr14:33714590-33714739 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 36, 0

Conread position: 286-441
Cow position: chr14:41749673-41749825 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 17, 0

Conread position: 286-442
Cow position: chr14:19959646-19959801 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 80, 22

Conread position: 286-442
Cow position: chr14:25334146-25333992 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 286-442
Cow position: chr14:37131742-37131595 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 90, 0

Conread position: 286-442
Cow position: chr14:48427160-48427007 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 126
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 85, 0

Conread position: 286-443
Cow position: chr14:7636408-7636567 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 72, 21

Conread position: 286-443
Cow position: chr14:15492683-15492525 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 95, 0

Conread position: 286-451
Cow position: chr14:26442253-26442416 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 20, 86

Conread position: 287-440
Cow position: chr14:27591868-27592021 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 10, 103

Conread position: 288-438
Cow position: chr14:19129593-19129443 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 108
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 288-438
Cow position: chr14:19618667-19618813 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 288-440
Cow position: chr14:16457603-16457455 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 12, 0

Conread position: 288-440
Cow position: chr14:16834409-16834257 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 288-440
Cow position: chr14:21933256-21933408 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 109
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 288-446
Cow position: chr14:35018667-35018824 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 20, 0

Conread position: 289-442
Cow position: chr14:5354940-5355091 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 123
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 11, 0

Conread position: 291-436
Cow position: chr14:16524557-16524406 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 104, 0

Conread position: 291-440
Cow position: chr14:10078352-10078203 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 124
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 291-440
Cow position: chr14:15997680-15997830 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 291-440
Cow position: chr14:34083076-34083229 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 52, 144

Conread position: 291-441
Cow position: chr14:16760482-16760333 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 108, 9

Conread position: 291-443
Cow position: chr14:24913958-24913808 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 9, 0

Conread position: 292-440
Cow position: chr14:13846066-13845921 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 14, 0

Conread position: 292-440
Cow position: chr14:15054908-15055056 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 107
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 292-440
Cow position: chr14:22989117-22988969 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 10, 55

Conread position: 292-440
Cow position: chr14:48838678-48838530 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 292-445
Cow position: chr14:42154889-42155040 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 93, 0

Conread position: 293-438
Cow position: chr14:4877150-4877292 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 134, 16

Conread position: 294-440
Cow position: chr14:9308310-9308165 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 294-440
Cow position: chr14:20640550-20640694 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 9, 0

Conread position: 295-440
Cow position: chr14:13731018-13731165 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 107, 0

Conread position: 295-440
Cow position: chr14:34096487-34096630 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 98, 76

Conread position: 296-440
Cow position: chr14:24796350-24796493 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 12, 125

Conread position: 300-438
Cow position: chr14:25903606-25903468 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 300-438
Cow position: chr14:33300779-33300641 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 13, 81

Conread position: 300-438
Cow position: chr14:45577017-45577155 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 300-440
Cow position: chr14:12924377-12924234 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 50, 115

Conread position: 300-440
Cow position: chr14:33791263-33791127 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 69, 0

Conread position: 300-441
Cow position: chr14:20826565-20826425 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 113, 0

Conread position: 300-441
Cow position: chr14:29734289-29734430 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 300-444
Cow position: chr14:2833329-2833474 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 300-444
Cow position: chr14:19359964-19359819 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 103, 0

Conread position: 302-434
Cow position: chr14:23682336-23682203 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 114, 0

Conread position: 302-437
Cow position: chr14:33644030-33643898 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 103
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 302-440
Cow position: chr14:11975663-11975797 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 303-438
Cow position: chr14:36254624-36254759 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 112
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 303-439
Cow position: chr14:2038737-2038872 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 5, 0

Conread position: 303-440
Cow position: chr14:34983941-34983802 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 84, 10

Conread position: 303-443
Cow position: chr14:49188757-49188899 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 110, 136

Conread position: 304-440
Cow position: chr14:20349658-20349797 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 111, 79

Conread position: 304-440
Cow position: chr14:38338063-38338198 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 98, 0

Conread position: 305-440
Cow position: chr14:19951638-19951501 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 88, 0

Conread position: 306-440
Cow position: chr14:1646117-1646249 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 107, 65

Conread position: 307-438
Cow position: chr14:4848415-4848285 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 45, 0

Conread position: 307-438
Cow position: chr14:33309436-33309566 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 6, 0

Conread position: 307-440
Cow position: chr14:34199775-34199908 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 109
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 307-443
Cow position: chr14:8784264-8784133 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 309-440
Cow position: chr14:25228207-25228079 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 62, 0

Conread position: 310-440
Cow position: chr14:9308130-9308000 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 310-440
Cow position: chr14:18302026-18301895 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 109, 0

Conread position: 311-440
Cow position: chr14:19487359-19487230 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 312-440
Cow position: chr14:10706938-10706812 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 41, 0

Conread position: 316-440
Cow position: chr14:36775709-36775587 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 14, 56

Conread position: 321-440
Cow position: chr14:40287646-40287527 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 326-438
Cow position: chr14:15491205-15491093 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 88
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 327-441
Cow position: chr14:4860550-4860437 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 93, 0

Conread position: 342-442
Cow position: chr14:28707080-28706980 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.