Cow genome map

Conread name: reep13c_k20.y1

Conread position: 247-438
Cow position: chr24:20364520-20364329 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 40, 9

Conread position: 265-438
Cow position: chr24:18614908-18615081 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 17, 36

Conread position: 269-440
Cow position: chr24:19736422-19736252 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 18, 48

Conread position: 283-439
Cow position: chr24:11007386-11007538 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 79, 0

Conread position: 285-440
Cow position: chr24:31816506-31816661 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 285-444
Cow position: chr24:3165745-3165905 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 126
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 26, 0

Conread position: 286-420
Cow position: chr24:44145510-44145641 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 85, 0

Conread position: 286-436
Cow position: chr24:27713476-27713326 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 286-436
Cow position: chr24:39483408-39483555 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 286-437
Cow position: chr24:201712-201557 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 286-437
Cow position: chr24:3430664-3430813 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 14, 0

Conread position: 286-437
Cow position: chr24:27726084-27725932 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 286-438
Cow position: chr24:18442630-18442478 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 63, 23

Conread position: 286-438
Cow position: chr24:28233974-28234123 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 120
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 84, 0

Conread position: 286-438
Cow position: chr24:30897607-30897457 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 123
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 132, 0

Conread position: 286-438
Cow position: chr24:37823459-37823608 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 17, 0

Conread position: 286-439
Cow position: chr24:11887089-11887239 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 11, 22

Conread position: 286-439
Cow position: chr24:17860330-17860176 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 16, 0

Conread position: 286-439
Cow position: chr24:39791470-39791623 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 286-440
Cow position: chr24:116624-116476 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 107, 0

Conread position: 286-440
Cow position: chr24:17104641-17104487 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 286-440
Cow position: chr24:18357124-18356969 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 11, 0

Conread position: 286-440
Cow position: chr24:18474798-18474646 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 129
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 9, 0

Conread position: 286-440
Cow position: chr24:24491087-24490935 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 16, 0

Conread position: 286-440
Cow position: chr24:25885230-25885076 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 15, 86

Conread position: 286-440
Cow position: chr24:27284751-27284899 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 14, 0

Conread position: 286-440
Cow position: chr24:27608170-27608025 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 21, 107

Conread position: 286-440
Cow position: chr24:27824389-27824545 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 286-440
Cow position: chr24:29063723-29063576 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 286-440
Cow position: chr24:29561645-29561490 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 33, 13

Conread position: 286-440
Cow position: chr24:30314099-30313943 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 7, 132

Conread position: 286-440
Cow position: chr24:37975052-37974898 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 286-440
Cow position: chr24:43028399-43028247 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 16, 27

Conread position: 286-441
Cow position: chr24:28319281-28319125 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 127
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 12, 0

Conread position: 286-441
Cow position: chr24:28496654-28496498 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 125
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 17, 0

Conread position: 286-441
Cow position: chr24:37037828-37037986 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 126
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 17, 0

Conread position: 286-443
Cow position: chr24:30308626-30308472 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 128
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 20, 124

Conread position: 286-444
Cow position: chr24:230207-230370 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 130
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 66, 0

Conread position: 286-444
Cow position: chr24:23186990-23186832 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 286-444
Cow position: chr24:43967570-43967417 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 28, 14

Conread position: 286-448
Cow position: chr24:6912437-6912273 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 130
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 15, 0

Conread position: 286-448
Cow position: chr24:41916185-41916350 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 68, 17

Conread position: 287-438
Cow position: chr24:17311287-17311141 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 287-440
Cow position: chr24:13352970-13353122 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 13, 0

Conread position: 287-441
Cow position: chr24:33153708-33153860 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 20, 0

Conread position: 287-441
Cow position: chr24:37650603-37650751 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 27, 123

Conread position: 287-444
Cow position: chr24:33222010-33221845 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 133
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 105, 0

Conread position: 288-437
Cow position: chr24:43364293-43364438 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 288-440
Cow position: chr24:15246713-15246560 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 12, 0

Conread position: 288-441
Cow position: chr24:31324216-31324368 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 120, 0

Conread position: 289-440
Cow position: chr24:4710311-4710161 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 94, 0

Conread position: 289-440
Cow position: chr24:5754770-5754918 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 20, 0

Conread position: 289-440
Cow position: chr24:27844597-27844445 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 123
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 9, 0

Conread position: 289-441
Cow position: chr24:5141877-5142026 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 128
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 18, 0

Conread position: 291-440
Cow position: chr24:27349240-27349094 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 80, 0

Conread position: 292-439
Cow position: chr24:2402433-2402286 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 294-439
Cow position: chr24:24662194-24662049 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 117
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 295-437
Cow position: chr24:2379890-2380032 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 104
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 295-440
Cow position: chr24:33244333-33244478 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 14, 40

Conread position: 299-439
Cow position: chr24:39849944-39849807 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 72, 0

Conread position: 300-434
Cow position: chr24:18732158-18732025 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 100
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 300-438
Cow position: chr24:6723710-6723849 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 300-440
Cow position: chr24:14457778-14457642 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 300-441
Cow position: chr24:31359262-31359404 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 9, 110

Conread position: 300-444
Cow position: chr24:32095256-32095394 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 66, 0

Conread position: 302-440
Cow position: chr24:37651670-37651808 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 103
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 302-440
Cow position: chr24:42981814-42981679 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 69, 0

Conread position: 303-437
Cow position: chr24:15373351-15373485 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 303-439
Cow position: chr24:11119221-11119359 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 303-440
Cow position: chr24:1269732-1269866 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 68, 0

Conread position: 303-440
Cow position: chr24:12077536-12077677 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 75, 0

Conread position: 303-440
Cow position: chr24:28042921-28043058 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 113
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 304-438
Cow position: chr24:17375585-17375719 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 304-438
Cow position: chr24:27740142-27740276 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 99
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 304-440
Cow position: chr24:5360666-5360799 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 65, 0

Conread position: 304-440
Cow position: chr24:22133118-22133254 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 304-443
Cow position: chr24:40301107-40301243 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 71, 0

Conread position: 305-440
Cow position: chr24:21835010-21834877 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 305-440
Cow position: chr24:29985037-29984901 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 306-442
Cow position: chr24:13948072-13948204 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 111
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 68, 0

Conread position: 307-438
Cow position: chr24:27748590-27748721 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 33, 40

Conread position: 308-437
Cow position: chr24:39523498-39523369 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 98
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 310-436
Cow position: chr24:28689620-28689747 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 50, 6

Conread position: 310-444
Cow position: chr24:40983084-40983217 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 311-440
Cow position: chr24:30235827-30235953 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 60, 0

Conread position: 313-442
Cow position: chr24:42687804-42687930 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 314-442
Cow position: chr24:29539971-29539845 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 9, 0

Conread position: 334-440
Cow position: chr24:13610288-13610393 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 93, 36

Conread position: 335-444
Cow position: chr24:18968826-18968935 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.