Cow genome map

Conread name: reep13c_k20.y1

Conread position: 247-444
Cow position: chr29:38978445-38978639 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 48, 39

Conread position: 270-443
Cow position: chr29:26275546-26275714 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 25, 0

Conread position: 285-440
Cow position: chr29:28446298-28446151 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 285-440
Cow position: chr29:29176662-29176512 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 286-437
Cow position: chr29:23220548-23220399 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 117, 0

Conread position: 286-437
Cow position: chr29:24578813-24578965 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 16, 0

Conread position: 286-437
Cow position: chr29:26778832-26778984 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 9, 76

Conread position: 286-437
Cow position: chr29:27329846-27329994 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 13, 0

Conread position: 286-438
Cow position: chr29:12626025-12625873 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 23, 13

Conread position: 286-438
Cow position: chr29:45005677-45005526 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 8, 61

Conread position: 286-439
Cow position: chr29:22613380-22613531 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 12, 128

Conread position: 286-440
Cow position: chr29:4002843-4002997 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 90, 14

Conread position: 286-440
Cow position: chr29:4874934-4874775 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 20, 126

Conread position: 286-440
Cow position: chr29:5186543-5186388 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 286-440
Cow position: chr29:19762224-19762373 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 286-440
Cow position: chr29:20770297-20770449 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 17, 84

Conread position: 286-440
Cow position: chr29:22162299-22162144 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 23, 0

Conread position: 286-440
Cow position: chr29:23155181-23155331 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 125
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 9, 0

Conread position: 286-440
Cow position: chr29:25092064-25092211 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 19, 49

Conread position: 286-440
Cow position: chr29:28840107-28840261 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 111
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 286-440
Cow position: chr29:30548727-30548881 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 286-440
Cow position: chr29:34359027-34358873 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 16, 28

Conread position: 286-440
Cow position: chr29:41811634-41811485 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 286-441
Cow position: chr29:26615768-26615611 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 86, 14

Conread position: 286-441
Cow position: chr29:44139292-44139138 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 111, 0

Conread position: 286-443
Cow position: chr29:18085523-18085680 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 286-443
Cow position: chr29:31943818-31943976 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 113, 14

Conread position: 286-448
Cow position: chr29:23243926-23243765 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 39, 0

Conread position: 287-432
Cow position: chr29:23984003-23983858 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 287-436
Cow position: chr29:10156350-10156205 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 10, 64

Conread position: 287-438
Cow position: chr29:23825260-23825107 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 16, 0

Conread position: 287-440
Cow position: chr29:8926510-8926356 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 11, 0

Conread position: 287-440
Cow position: chr29:19949260-19949412 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 20, 86

Conread position: 287-440
Cow position: chr29:29314700-29314543 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 120, 0

Conread position: 287-443
Cow position: chr29:5063102-5063253 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 288-432
Cow position: chr29:4520292-4520433 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 14, 75

Conread position: 288-437
Cow position: chr29:18012510-18012660 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 288-438
Cow position: chr29:41530804-41530952 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 110
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 288-440
Cow position: chr29:30918503-30918654 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 21, 11

Conread position: 288-440
Cow position: chr29:31928942-31929092 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 105, 0

Conread position: 288-441
Cow position: chr29:40873964-40874117 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 289-440
Cow position: chr29:25737461-25737309 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 8, 0

Conread position: 289-440
Cow position: chr29:40117527-40117676 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 289-442
Cow position: chr29:43099790-43099639 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 290-434
Cow position: chr29:1556886-1557030 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 13, 45

Conread position: 292-437
Cow position: chr29:27826480-27826622 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 79, 0

Conread position: 292-439
Cow position: chr29:31200215-31200362 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 293-440
Cow position: chr29:29769393-29769246 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 95, 83

Conread position: 295-438
Cow position: chr29:13028405-13028543 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 296-440
Cow position: chr29:26559282-26559141 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 297-434
Cow position: chr29:12680118-12680255 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 114
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 298-443
Cow position: chr29:22032678-22032532 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 104, 36

Conread position: 299-440
Cow position: chr29:21285324-21285464 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 93, 0

Conread position: 299-440
Cow position: chr29:34687799-34687940 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 300-440
Cow position: chr29:22735140-22735003 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 71, 0

Conread position: 300-440
Cow position: chr29:29324455-29324321 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 70, 0

Conread position: 300-441
Cow position: chr29:36530832-36530973 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 301-440
Cow position: chr29:4070594-4070729 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 301-440
Cow position: chr29:17109927-17110062 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 115
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 6, 0

Conread position: 301-440
Cow position: chr29:36217081-36217217 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 70, 0

Conread position: 302-442
Cow position: chr29:39038302-39038162 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 302-445
Cow position: chr29:26540573-26540431 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 120
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 134, 0

Conread position: 303-439
Cow position: chr29:17804503-17804638 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 89, 0

Conread position: 303-440
Cow position: chr29:7624147-7624283 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 86, 0

Conread position: 303-440
Cow position: chr29:9709662-9709800 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 303-440
Cow position: chr29:32197665-32197802 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 303-453
Cow position: chr29:5892813-5892963 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 304-438
Cow position: chr29:31981800-31981934 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 100
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 304-439
Cow position: chr29:30681741-30681607 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 304-440
Cow position: chr29:9310569-9310705 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 77, 70

Conread position: 306-440
Cow position: chr29:32211095-32210966 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 307-439
Cow position: chr29:35501682-35501549 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 125, 0

Conread position: 308-440
Cow position: chr29:17154752-17154883 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 64, 0

Conread position: 310-438
Cow position: chr29:22723576-22723704 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 310-440
Cow position: chr29:41112904-41112776 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 311-440
Cow position: chr29:742673-742544 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 311-442
Cow position: chr29:21666063-21666194 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 312-440
Cow position: chr29:7290753-7290881 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 315-440
Cow position: chr29:11527809-11527687 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 56, 0

Conread position: 320-438
Cow position: chr29:9378622-9378740 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 91
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 322-440
Cow position: chr29:36781317-36781199 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 325-439
Cow position: chr29:19363701-19363814 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 327-439
Cow position: chr29:19125314-19125426 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 342-440
Cow position: chr29:17022157-17022255 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 87
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.