Cow genome map

Conread name: reje03b_g17.y1

Conread position: 1-182
Cow position: chr12:20283534-20283726 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 151
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 101, 26

Conread position: 1-183
Cow position: chr12:22124651-22124829 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 42, 49

Conread position: 1-183
Cow position: chr12:22132339-22132161 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 143
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 42, 49

Conread position: 1-235
Cow position: chr12:7108816-7109067 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 194
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 64, 0

Conread position: 1-252
Cow position: chr12:35311042-35310781 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 195
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 96, 222

Conread position: 1-260
Cow position: chr12:28011268-28010998 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 1-262
Cow position: chr12:7311039-7311299 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 188
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 99, 148

Conread position: 1-279
Cow position: chr12:36568416-36568137 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 201
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 96, 50

Conread position: 1-280
Cow position: chr12:26869165-26868870 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 218
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 96, 111

Conread position: 1-282
Cow position: chr12:24755393-24755108 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 119

Conread position: 1-286
Cow position: chr12:9414135-9413852 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 95

Conread position: 1-296
Cow position: chr12:8172798-8173106 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 201
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 1-298
Cow position: chr12:7919697-7919984 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 102

Conread position: 1-299
Cow position: chr12:45802068-45801777 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 210
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 102, 152

Conread position: 1-336
Cow position: chr12:44596183-44595835 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 237
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 102, 88

Conread position: 1-337
Cow position: chr12:19039986-19039634 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 248
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 72, 297

Conread position: 1-394
Cow position: chr12:42602605-42602210 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 282
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 145, 92

Conread position: 1-399
Cow position: chr12:6240938-6241357 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 49

Conread position: 1-399
Cow position: chr12:7000973-7000566 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 117

Conread position: 1-399
Cow position: chr12:36501316-36500909 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 278
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 143, 78

Conread position: 1-399
Cow position: chr12:37770502-37770908 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 279
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 100, 291

Conread position: 1-399
Cow position: chr12:40910659-40910247 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 222

Conread position: 1-399
Cow position: chr12:42181507-42181091 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 50

Conread position: 1-399
Cow position: chr12:42254292-42254705 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 55

Conread position: 1-399
Cow position: chr12:42966632-42967033 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 267

Conread position: 2-255
Cow position: chr12:37123145-37123401 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 135

Conread position: 2-298
Cow position: chr12:41083684-41084009 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 222
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 64, 113

Conread position: 2-394
Cow position: chr12:15938633-15938233 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 56

Conread position: 3-280
Cow position: chr12:11583039-11583319 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 70

Conread position: 3-291
Cow position: chr12:3568583-3568879 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 215
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 100, 53

Conread position: 3-292
Cow position: chr12:19869105-19869406 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 44

Conread position: 3-296
Cow position: chr12:20326408-20326713 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 231
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 94, 35

Conread position: 3-305
Cow position: chr12:3039148-3039454 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 43

Conread position: 3-307
Cow position: chr12:16359507-16359827 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 228
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 94, 271

Conread position: 3-312
Cow position: chr12:3578917-3579237 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 228
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 118, 48

Conread position: 3-349
Cow position: chr12:18944017-18943672 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 254
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 40, 45

Conread position: 3-387
Cow position: chr12:18550529-18550907 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 252
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 40, 45

Conread position: 3-397
Cow position: chr12:19154975-19154578 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 52

Conread position: 3-399
Cow position: chr12:31532780-31532366 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 282
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 73, 114

Conread position: 4-186
Cow position: chr12:29119534-29119719 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 146
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 80, 29

Conread position: 4-261
Cow position: chr12:44274210-44273939 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 200
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 39, 44

Conread position: 4-399
Cow position: chr12:7977687-7978075 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 282
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 7, 24

Conread position: 7-258
Cow position: chr12:18123324-18123579 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 194
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 137, 210

Conread position: 10-286
Cow position: chr12:35218764-35218475 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 216
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 134, 214

Conread position: 14-307
Cow position: chr12:5800682-5800982 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 88

Conread position: 19-394
Cow position: chr12:9710556-9710175 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 264
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 52, 129

Conread position: 21-282
Cow position: chr12:18076187-18076460 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 201
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 82, 35

Conread position: 21-386
Cow position: chr12:18577497-18577864 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 244

Conread position: 39-350
Cow position: chr12:34385845-34385518 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 233
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 66, 186

Conread position: 41-268
Cow position: chr12:31925326-31925557 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 182
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 56, 5

Conread position: 44-186
Cow position: chr12:17486463-17486317 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 7, 16

Conread position: 46-282
Cow position: chr12:22261138-22260896 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 180
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 52, 101

Conread position: 51-399
Cow position: chr12:44622038-44622386 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 248
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 21, 114

Conread position: 53-399
Cow position: chr12:29995779-29995426 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 246
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 50, 247

Conread position: 55-246
Cow position: chr12:36954689-36954487 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 152
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 42, 6

Conread position: 55-298
Cow position: chr12:8869200-8868935 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 194
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 9, 0

Conread position: 56-296
Cow position: chr12:19664829-19664589 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 88, 74

Conread position: 59-291
Cow position: chr12:30805543-30805788 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 181
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 5, 163

Conread position: 64-255
Cow position: chr12:46635251-46635048 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 35, 0

Conread position: 64-291
Cow position: chr12:20479618-20479394 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 178
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 83, 38

Conread position: 64-399
Cow position: chr12:8943526-8943186 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 239
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 39, 76

Conread position: 65-253
Cow position: chr12:6687564-6687756 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 33, 157

Conread position: 65-296
Cow position: chr12:32391540-32391789 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 184
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 38, 0

Conread position: 65-335
Cow position: chr12:27563138-27562854 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 201
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 79, 27

Conread position: 70-332
Cow position: chr12:1848838-1848557 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 173
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 28, 160

Conread position: 71-305
Cow position: chr12:34473912-34473674 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 169
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 28, 11

Conread position: 72-297
Cow position: chr12:22881754-22881996 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 184
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 97, 53

Conread position: 73-289
Cow position: chr12:40270383-40270159 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 174
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 30, 144

Conread position: 73-291
Cow position: chr12:29694334-29694110 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 106, 74

Conread position: 73-349
Cow position: chr12:19715324-19715048 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 191
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 73, 96

Conread position: 74-304
Cow position: chr12:18081839-18081602 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 29, 159

Conread position: 74-337
Cow position: chr12:25455818-25456095 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 203
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 29, 228

Conread position: 75-399
Cow position: chr12:28582787-28582470 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 229
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 28, 98

Conread position: 78-299
Cow position: chr12:11109478-11109708 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 177
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 26, 16

Conread position: 79-255
Cow position: chr12:20849723-20849892 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 18, 77

Conread position: 81-294
Cow position: chr12:40110100-40110322 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 163
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 22, 138

Conread position: 83-261
Cow position: chr12:12178634-12178824 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 19, 0

Conread position: 83-338
Cow position: chr12:941345-941617 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 191
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 14, 196

Conread position: 85-339
Cow position: chr12:41214603-41214343 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 185
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 59, 26

Conread position: 96-399
Cow position: chr12:30662223-30661912 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 225
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 25, 207

Conread position: 98-261
Cow position: chr12:8710560-8710728 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 49, 111

Conread position: 107-280
Cow position: chr12:29162073-29161891 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 37, 112

Conread position: 110-399
Cow position: chr12:17774546-17774832 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 196
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 34, 149

Conread position: 177-397
Cow position: chr12:35123713-35123925 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 154
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 85, 57

Conread position: 180-399
Cow position: chr12:23916666-23916880 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 83, 13

Conread position: 199-399
Cow position: chr12:4719786-4719985 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 140
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 64, 87

Show alignments to all cow chromosomes.