Cow genome map

Conread name: reje03b_g17.y1

Conread position: 1-187
Cow position: chr18:30420825-30420639 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 85, 39

Conread position: 1-187
Cow position: chr18:49660403-49660212 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 152
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 103, 0

Conread position: 1-251
Cow position: chr18:54646128-54646377 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 171
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 146, 55

Conread position: 1-253
Cow position: chr18:47183648-47183383 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 200
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 42, 47

Conread position: 1-261
Cow position: chr18:27388191-27388461 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 195
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 96, 70

Conread position: 1-277
Cow position: chr18:9818477-9818765 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 206
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 144, 55

Conread position: 1-277
Cow position: chr18:16045363-16045075 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 199
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 99, 0

Conread position: 1-280
Cow position: chr18:5190042-5189758 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 101

Conread position: 1-285
Cow position: chr18:3098675-3098383 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 87

Conread position: 1-287
Cow position: chr18:1584568-1584294 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 204
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 174, 47

Conread position: 1-292
Cow position: chr18:33793341-33793645 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 214
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 104, 267

Conread position: 1-294
Cow position: chr18:33606267-33606575 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 92

Conread position: 1-296
Cow position: chr18:36445067-36445385 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 232
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 42, 14

Conread position: 1-297
Cow position: chr18:24342263-24342565 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 38

Conread position: 1-306
Cow position: chr18:11831780-11832082 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 18

Conread position: 1-319
Cow position: chr18:45104810-45104479 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 303

Conread position: 1-330
Cow position: chr18:49665520-49665177 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 250
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 96, 77

Conread position: 1-337
Cow position: chr18:24022028-24022369 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 47

Conread position: 1-383
Cow position: chr18:22391068-22390671 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 250
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 102, 62

Conread position: 1-391
Cow position: chr18:43950476-43950861 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 277
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 66, 125

Conread position: 1-397
Cow position: chr18:16044513-16044110 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 264
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 100, 48

Conread position: 1-398
Cow position: chr18:31672864-31672471 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 277
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 102, 13

Conread position: 1-399
Cow position: chr18:11377008-11377407 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 290
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 168, 47

Conread position: 1-399
Cow position: chr18:19193708-19193322 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 47

Conread position: 1-399
Cow position: chr18:20174493-20174086 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 299

Conread position: 1-399
Cow position: chr18:23447441-23447018 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 296
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 71, 41

Conread position: 1-399
Cow position: chr18:29371504-29371910 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 283
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 67, 120

Conread position: 1-399
Cow position: chr18:36458571-36458974 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 300

Conread position: 1-399
Cow position: chr18:52635444-52635027 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 47

Conread position: 2-248
Cow position: chr18:9007787-9008037 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 188
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 99, 127

Conread position: 2-280
Cow position: chr18:26286551-26286840 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 100

Conread position: 2-399
Cow position: chr18:35012667-35012274 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 280
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 101, 8

Conread position: 3-243
Cow position: chr18:45395632-45395896 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 205
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 53, 233

Conread position: 3-271
Cow position: chr18:4624790-4624510 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 203
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 40, 52

Conread position: 3-290
Cow position: chr18:42747226-42747533 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 217
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 63, 168

Conread position: 3-301
Cow position: chr18:601531-601235 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 99

Conread position: 3-301
Cow position: chr18:12118206-12117893 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 215
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 101, 0

Conread position: 3-303
Cow position: chr18:1594290-1593985 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 203
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 95, 123

Conread position: 3-336
Cow position: chr18:10861776-10861449 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 246
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 100, 9

Conread position: 3-336
Cow position: chr18:35636708-35636366 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 248
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 93, 53

Conread position: 3-336
Cow position: chr18:56151016-56150663 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 18

Conread position: 3-388
Cow position: chr18:51406252-51405874 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 273
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 94, 15

Conread position: 3-388
Cow position: chr18:51826930-51827313 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 275
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 98, 239

Conread position: 3-392
Cow position: chr18:39002156-39001771 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 274
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 100, 168

Conread position: 3-399
Cow position: chr18:7950752-7951158 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 280
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 100, 258

Conread position: 3-399
Cow position: chr18:17004893-17005303 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 290
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 98, 40

Conread position: 3-399
Cow position: chr18:19850106-19849714 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 280
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 5, 62

Conread position: 3-399
Cow position: chr18:22121241-22120842 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 70

Conread position: 3-399
Cow position: chr18:37023917-37023507 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 298

Conread position: 4-186
Cow position: chr18:9846793-9846608 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 143
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 105, 61

Conread position: 4-292
Cow position: chr18:3180060-3180356 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 221
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 80, 47

Conread position: 5-292
Cow position: chr18:29796792-29796483 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 215
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 34, 52

Conread position: 5-399
Cow position: chr18:7955789-7956191 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 280
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 139, 97

Conread position: 9-296
Cow position: chr18:56159104-56159408 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 226
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 34, 120

Conread position: 11-295
Cow position: chr18:11867000-11867281 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 213
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 136, 51

Conread position: 11-350
Cow position: chr18:2774940-2774607 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 244
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 143, 90

Conread position: 12-399
Cow position: chr18:40758864-40759250 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 180

Conread position: 16-183
Cow position: chr18:56191552-56191381 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 136
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 87, 0

Conread position: 21-396
Cow position: chr18:1216993-1216618 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 255
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 82, 255

Conread position: 39-322
Cow position: chr18:52382372-52382670 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 217
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 23, 113

Conread position: 39-399
Cow position: chr18:19273424-19273053 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 268
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 108, 34

Conread position: 48-245
Cow position: chr18:1733507-1733301 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 96, 0

Conread position: 63-261
Cow position: chr18:3115159-3115371 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 170
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 84, 0

Conread position: 64-300
Cow position: chr18:46048459-46048709 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 181
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 13, 0

Conread position: 64-315
Cow position: chr18:55789292-55789028 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 194
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 33, 163

Conread position: 64-397
Cow position: chr18:19143816-19143469 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 245
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 82, 75

Conread position: 65-296
Cow position: chr18:5766130-5766359 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 178
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 38, 96

Conread position: 65-340
Cow position: chr18:11166680-11166965 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 217
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 38, 159

Conread position: 65-388
Cow position: chr18:39875557-39875227 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 228
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 35, 13

Conread position: 66-286
Cow position: chr18:13359764-13360000 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 185
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 39, 63

Conread position: 66-399
Cow position: chr18:22214188-22214531 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 239
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 31, 95

Conread position: 66-399
Cow position: chr18:55498769-55499114 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 249
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 78, 5

Conread position: 67-285
Cow position: chr18:4649032-4648808 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 162
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 29, 0

Conread position: 69-261
Cow position: chr18:39115439-39115231 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 71-293
Cow position: chr18:16847405-16847636 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 170
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 32, 146

Conread position: 73-282
Cow position: chr18:30341454-30341241 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 31, 57

Conread position: 73-282
Cow position: chr18:47931151-47930932 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 30, 78

Conread position: 73-296
Cow position: chr18:268102-267871 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 175
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 31, 145

Conread position: 74-399
Cow position: chr18:39434550-39434868 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 213
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 29, 49

Conread position: 75-306
Cow position: chr18:1587080-1586846 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 167
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 9, 78

Conread position: 75-399
Cow position: chr18:20271309-20270971 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 232
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 26, 216

Conread position: 77-296
Cow position: chr18:19831010-19831256 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 178
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 77-336
Cow position: chr18:36097914-36098192 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 65, 0

Conread position: 80-336
Cow position: chr18:3708757-3709016 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 180
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 128, 75

Conread position: 80-336
Cow position: chr18:48453410-48453668 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 189
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 20, 9

Conread position: 83-304
Cow position: chr18:46437034-46436812 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 167
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 135

Conread position: 89-262
Cow position: chr18:5711943-5711758 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 135

Conread position: 95-398
Cow position: chr18:17650004-17649696 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 209
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 17, 9

Conread position: 95-399
Cow position: chr18:37382366-37382050 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 227
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 49, 131

Conread position: 102-337
Cow position: chr18:35582363-35582116 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 42, 120

Conread position: 104-313
Cow position: chr18:1588862-1588647 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 154
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 75, 48

Conread position: 144-388
Cow position: chr18:33896639-33896386 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 176
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 44, 60

Conread position: 150-398
Cow position: chr18:3211658-3211920 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 180
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 148

Conread position: 152-308
Cow position: chr18:52170678-52170836 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 108, 5

Conread position: 166-398
Cow position: chr18:30225730-30225488 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 164
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 23, 211

Conread position: 180-399
Cow position: chr18:50974466-50974251 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 153
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 81, 32

Conread position: 181-398
Cow position: chr18:4330785-4331003 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 144
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 81, 126

Conread position: 195-337
Cow position: chr18:43065370-43065511 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 68, 91

Show alignments to all cow chromosomes.