Cow genome map

Conread name: reje03b_g17.y1

Conread position: 1-185
Cow position: chr20:7710495-7710310 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 144
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 143, 112

Conread position: 1-225
Cow position: chr20:12155391-12155155 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 168
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 24, 116

Conread position: 1-261
Cow position: chr20:16291191-16291455 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 204
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 103, 63

Conread position: 1-261
Cow position: chr20:33170159-33169889 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 55

Conread position: 1-273
Cow position: chr20:12048120-12048392 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 198
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 109, 120

Conread position: 1-282
Cow position: chr20:19328114-19328409 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 41

Conread position: 1-285
Cow position: chr20:17734057-17733764 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 218
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 146, 47

Conread position: 1-288
Cow position: chr20:12334095-12334389 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 20

Conread position: 1-292
Cow position: chr20:22959631-22959326 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 29

Conread position: 1-294
Cow position: chr20:23065125-23064810 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 227
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 66, 234

Conread position: 1-296
Cow position: chr20:24391712-24392001 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 216
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 144, 42

Conread position: 1-299
Cow position: chr20:38935497-38935213 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 215
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 261, 24

Conread position: 1-313
Cow position: chr20:19410653-19410329 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 238
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 143, 92

Conread position: 1-325
Cow position: chr20:3781719-3781378 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 306

Conread position: 1-335
Cow position: chr20:31069354-31069692 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 240
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 146, 101

Conread position: 1-336
Cow position: chr20:398578-398250 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 231
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 97, 13

Conread position: 1-336
Cow position: chr20:30817248-30817594 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 243
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 48, 220

Conread position: 1-352
Cow position: chr20:38817728-38818077 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 253
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 145, 55

Conread position: 1-383
Cow position: chr20:33144841-33144450 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 89

Conread position: 1-388
Cow position: chr20:11453642-11453251 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 273
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 145, 285

Conread position: 1-397
Cow position: chr20:14806597-14807004 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 283
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 72, 45

Conread position: 1-398
Cow position: chr20:20353202-20352794 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 116

Conread position: 1-398
Cow position: chr20:24398920-24398528 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 265

Conread position: 1-399
Cow position: chr20:6054793-6054390 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 43

Conread position: 1-399
Cow position: chr20:9412208-9412607 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 101

Conread position: 1-399
Cow position: chr20:9536849-9537251 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 57

Conread position: 1-399
Cow position: chr20:17251423-17251836 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 101

Conread position: 1-399
Cow position: chr20:18321082-18320675 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 281
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 96, 48

Conread position: 1-399
Cow position: chr20:19236803-19237194 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 275
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 123, 36

Conread position: 1-399
Cow position: chr20:20202928-20203337 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 301

Conread position: 2-228
Cow position: chr20:23850005-23850234 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 179
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 95, 19

Conread position: 2-252
Cow position: chr20:39377426-39377179 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 26

Conread position: 2-255
Cow position: chr20:40423377-40423112 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 198
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 103, 222

Conread position: 2-261
Cow position: chr20:11765892-11765624 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 183
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 41, 89

Conread position: 2-308
Cow position: chr20:10235565-10235884 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 234
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 101, 290

Conread position: 2-399
Cow position: chr20:29844758-29845170 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 260

Conread position: 3-260
Cow position: chr20:41119638-41119894 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 181
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 144, 7

Conread position: 3-286
Cow position: chr20:23679433-23679136 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 3-293
Cow position: chr20:33435448-33435147 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 53

Conread position: 3-304
Cow position: chr20:22445923-22445606 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 218
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 23, 0

Conread position: 3-388
Cow position: chr20:22313446-22313052 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 140

Conread position: 3-393
Cow position: chr20:31740498-31740106 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 279
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 99, 52

Conread position: 3-397
Cow position: chr20:39415469-39415867 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 281
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 94, 24

Conread position: 3-399
Cow position: chr20:581214-580801 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 273
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 62, 290

Conread position: 3-399
Cow position: chr20:12996295-12995887 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 47

Conread position: 5-261
Cow position: chr20:7806846-7806574 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 206
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 95, 254

Conread position: 6-316
Cow position: chr20:42469484-42469803 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 63

Conread position: 14-317
Cow position: chr20:13269350-13269658 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 228
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 130, 92

Conread position: 15-187
Cow position: chr20:39294586-39294762 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 88, 116

Conread position: 15-296
Cow position: chr20:21714478-21714778 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 223
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 83, 49

Conread position: 18-386
Cow position: chr20:35958378-35958754 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 264
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 126, 76

Conread position: 21-244
Cow position: chr20:20196877-20197105 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 172
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 84, 187

Conread position: 21-296
Cow position: chr20:32636832-32636550 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 77, 16

Conread position: 23-325
Cow position: chr20:7659475-7659172 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 223
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 121, 65

Conread position: 26-350
Cow position: chr20:13967522-13967186 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 181

Conread position: 39-248
Cow position: chr20:22235062-22235285 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 168
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 27, 0

Conread position: 48-280
Cow position: chr20:40127577-40127330 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 177
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 48, 0

Conread position: 57-398
Cow position: chr20:11341037-11340686 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 253
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 46, 245

Conread position: 58-394
Cow position: chr20:35177004-35176663 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 240
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 39, 80

Conread position: 63-292
Cow position: chr20:30777950-30778191 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 167
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 38, 141

Conread position: 63-388
Cow position: chr20:15549123-15548788 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 229
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 40, 98

Conread position: 64-399
Cow position: chr20:4205738-4206091 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 236
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 39, 261

Conread position: 65-258
Cow position: chr20:11043722-11043522 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 5, 153

Conread position: 65-289
Cow position: chr20:14572580-14572348 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 172
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 33, 202

Conread position: 65-350
Cow position: chr20:22704064-22704365 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 34, 241

Conread position: 66-318
Cow position: chr20:6848399-6848669 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 203
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 35, 41

Conread position: 67-291
Cow position: chr20:11923463-11923226 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 177
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 10, 154

Conread position: 67-399
Cow position: chr20:13829045-13829379 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 231
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 80, 27

Conread position: 69-399
Cow position: chr20:40511977-40511637 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 233
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 75, 232

Conread position: 71-233
Cow position: chr20:13023696-13023519 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 140
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 26, 0

Conread position: 73-272
Cow position: chr20:5025518-5025307 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 30, 0

Conread position: 73-278
Cow position: chr20:7442340-7442124 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 30, 0

Conread position: 73-280
Cow position: chr20:14735461-14735681 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 166
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 71, 0

Conread position: 73-281
Cow position: chr20:14759880-14759654 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 169
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 27, 154

Conread position: 73-296
Cow position: chr20:40256754-40256992 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 30, 87

Conread position: 75-280
Cow position: chr20:9379195-9379415 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 165
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 28, 0

Conread position: 75-295
Cow position: chr20:28296076-28296315 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 22, 0

Conread position: 75-296
Cow position: chr20:11482353-11482112 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 176
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 28, 0

Conread position: 75-399
Cow position: chr20:14879572-14879908 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 226
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 29, 235

Conread position: 77-299
Cow position: chr20:38578966-38578738 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 168
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 67, 25

Conread position: 78-278
Cow position: chr20:35907257-35907048 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 66, 0

Conread position: 78-337
Cow position: chr20:32069069-32068794 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 191
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 6, 193

Conread position: 79-259
Cow position: chr20:35760461-35760651 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 19, 143

Conread position: 79-399
Cow position: chr20:34251888-34251553 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 229
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 24, 242

Conread position: 80-299
Cow position: chr20:33176973-33177215 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 190
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 18, 0

Conread position: 82-399
Cow position: chr20:38551167-38551487 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 231
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 20, 216

Conread position: 85-383
Cow position: chr20:24000981-24000694 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 205
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 178, 5

Conread position: 91-336
Cow position: chr20:28067623-28067363 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 186
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 54, 0

Conread position: 96-399
Cow position: chr20:34098150-34097834 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 213
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 53, 206

Conread position: 104-336
Cow position: chr20:14980698-14980453 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 177
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 6

Conread position: 110-337
Cow position: chr20:37272538-37272772 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 169
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 50, 36

Conread position: 114-399
Cow position: chr20:32523294-32523583 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 192
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 59, 180

Conread position: 119-399
Cow position: chr20:3321307-3321025 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 210
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 25, 99

Conread position: 124-398
Cow position: chr20:271587-271305 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 197
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 22, 143

Conread position: 144-399
Cow position: chr20:14433569-14433302 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 184
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 42, 77

Conread position: 185-399
Cow position: chr20:23506564-23506351 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 151
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 24, 109

Show alignments to all cow chromosomes.