Cow genome map
| Conread name: | reje03b_g17.y1 |
| Conread position: | 1-279 |
| Cow position: | chr23:361240-360952 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 74, 81 |
| Conread position: | 1-280 |
| Cow position: | chr23:25865008-25864729 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 40, 46 |
| Conread position: | 1-282 |
| Cow position: | chr23:13520129-13520417 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 216 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 102, 76 |
| Conread position: | 1-290 |
| Cow position: | chr23:32961705-32961388 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 65, 233 |
| Conread position: | 1-292 |
| Cow position: | chr23:9734090-9734391 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 101 |
| Conread position: | 1-293 |
| Cow position: | chr23:7596657-7596354 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 102, 53 |
| Conread position: | 1-295 |
| Cow position: | chr23:7175294-7175598 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 55 |
| Conread position: | 1-296 |
| Cow position: | chr23:9595158-9594851 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 96, 129 |
| Conread position: | 1-296 |
| Cow position: | chr23:18367367-18367682 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 234 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 42, 47 |
| Conread position: | 1-299 |
| Cow position: | chr23:6720606-6720300 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 28, 150 |
| Conread position: | 1-301 |
| Cow position: | chr23:22530735-22530432 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 149, 55 |
| Conread position: | 1-349 |
| Cow position: | chr23:5162098-5162460 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 55 |
| Conread position: | 1-383 |
| Cow position: | chr23:18322746-18322364 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 280 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 143, 45 |
| Conread position: | 1-388 |
| Cow position: | chr23:39778087-39778469 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 55 |
| Conread position: | 1-388 |
| Cow position: | chr23:40780999-40781397 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 89 |
| Conread position: | 1-393 |
| Cow position: | chr23:10852726-10853118 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 55 |
| Conread position: | 1-397 |
| Cow position: | chr23:1289974-1290374 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 142, 55 |
| Conread position: | 1-398 |
| Cow position: | chr23:3727728-3727307 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 290 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 146, 65 |
| Conread position: | 1-398 |
| Cow position: | chr23:18802602-18802192 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 227 |
| Conread position: | 1-398 |
| Cow position: | chr23:40502831-40502437 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 146, 55 |
| Conread position: | 1-399 |
| Cow position: | chr23:1398363-1397960 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 93 |
| Conread position: | 1-399 |
| Cow position: | chr23:1924162-1923758 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 101 |
| Conread position: | 1-399 |
| Cow position: | chr23:7844960-7845372 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 292 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 77, 58 |
| Conread position: | 1-399 |
| Cow position: | chr23:11128904-11129312 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 24 |
| Conread position: | 1-399 |
| Cow position: | chr23:15710406-15709993 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 77, 102 |
| Conread position: | 1-399 |
| Cow position: | chr23:21336818-21336405 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 321 |
| Conread position: | 1-399 |
| Cow position: | chr23:24866977-24867388 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 100, 47 |
| Conread position: | 1-399 |
| Cow position: | chr23:38455514-38455100 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 226 |
| Conread position: | 2-262 |
| Cow position: | chr23:26741778-26741513 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 2-297 |
| Cow position: | chr23:22804396-22804705 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 102, 73 |
| Conread position: | 2-336 |
| Cow position: | chr23:1670593-1670918 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 13 |
| Conread position: | 2-387 |
| Cow position: | chr23:34416241-34416628 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 147 |
| Conread position: | 2-388 |
| Cow position: | chr23:1337642-1337236 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 280 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 73, 128 |
| Conread position: | 2-399 |
| Cow position: | chr23:1535994-1536398 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 289 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 41, 46 |
| Conread position: | 2-399 |
| Cow position: | chr23:18698354-18697947 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 271 |
| Conread position: | 3-261 |
| Cow position: | chr23:221743-222011 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 100, 219 |
| Conread position: | 3-261 |
| Cow position: | chr23:5870514-5870237 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 3-293 |
| Cow position: | chr23:37992669-37992962 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 144, 85 |
| Conread position: | 3-296 |
| Cow position: | chr23:6223683-6223962 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 148, 33 |
| Conread position: | 3-296 |
| Cow position: | chr23:14839059-14838763 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 224 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 95, 53 |
| Conread position: | 3-334 |
| Cow position: | chr23:37065514-37065863 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 15 |
| Conread position: | 3-399 |
| Cow position: | chr23:39752787-39753193 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 265 |
| Conread position: | 4-399 |
| Cow position: | chr23:1647293-1647695 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 275 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 62, 220 |
| Conread position: | 6-296 |
| Cow position: | chr23:34356334-34356623 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 255, 136 |
| Conread position: | 11-398 |
| Cow position: | chr23:10085499-10085108 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 281 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 92, 42 |
| Conread position: | 21-181 |
| Cow position: | chr23:7937845-7937685 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 126, 35 |
| Conread position: | 24-397 |
| Cow position: | chr23:3247285-3247665 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 80, 33 |
| Conread position: | 34-296 |
| Cow position: | chr23:13599052-13599324 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 111, 48 |
| Conread position: | 47-261 |
| Cow position: | chr23:17461958-17462167 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 45, 109 |
| Conread position: | 48-382 |
| Cow position: | chr23:31601740-31601389 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 249 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 49, 257 |
| Conread position: | 49-399 |
| Cow position: | chr23:186889-187257 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 7, 257 |
| Conread position: | 51-299 |
| Cow position: | chr23:1605400-1605662 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 51-335 |
| Cow position: | chr23:33233184-33232893 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 99, 43 |
| Conread position: | 54-249 |
| Cow position: | chr23:24562146-24561959 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 11, 124 |
| Conread position: | 57-296 |
| Cow position: | chr23:20195189-20194936 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 40, 7 |
| Conread position: | 57-399 |
| Cow position: | chr23:36309154-36309499 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 250 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 84, 45 |
| Conread position: | 64-186 |
| Cow position: | chr23:1878137-1878011 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 64-262 |
| Cow position: | chr23:27563975-27563768 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 39, 151 |
| Conread position: | 64-293 |
| Cow position: | chr23:21445857-21446096 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 122, 38 |
| Conread position: | 64-296 |
| Cow position: | chr23:29242678-29242930 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 71-296 |
| Cow position: | chr23:6592952-6592718 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 73-177 |
| Cow position: | chr23:34612041-34611938 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 73-295 |
| Cow position: | chr23:1991684-1991450 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 30, 165 |
| Conread position: | 73-399 |
| Cow position: | chr23:4968776-4968445 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 92, 72 |
| Conread position: | 75-281 |
| Cow position: | chr23:26632545-26632771 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 76-399 |
| Cow position: | chr23:2282428-2282103 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 27, 57 |
| Conread position: | 82-336 |
| Cow position: | chr23:2055454-2055720 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 192 |
| Conread position: | 82-399 |
| Cow position: | chr23:18402534-18402211 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 185 |
| Conread position: | 84-259 |
| Cow position: | chr23:6767646-6767831 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 60, 8 |
| Conread position: | 85-399 |
| Cow position: | chr23:16700284-16699963 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 14, 214 |
| Conread position: | 93-399 |
| Cow position: | chr23:27544595-27544906 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 11, 127 |
| Conread position: | 96-291 |
| Cow position: | chr23:35254471-35254263 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 47, 127 |
| Conread position: | 105-297 |
| Cow position: | chr23:5723319-5723524 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 36, 118 |
| Conread position: | 119-286 |
| Cow position: | chr23:18296597-18296779 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 105 |
| Conread position: | 178-398 |
| Cow position: | chr23:349865-349646 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 21, 14 |
| Conread position: | 180-399 |
| Cow position: | chr23:4329817-4329596 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 81, 29 |
| Conread position: | 186-383 |
| Cow position: | chr23:3245052-3244851 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 111 |
Show alignments to all cow chromosomes.