Cow genome map
| Conread name: | reje03b_g17.y1 |
| Conread position: | 1-187 |
| Cow position: | chr25:4897764-4897955 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 1-261 |
| Cow position: | chr25:25754328-25754058 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 143, 70 |
| Conread position: | 1-282 |
| Cow position: | chr25:33839055-33839342 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 101, 182 |
| Conread position: | 1-286 |
| Cow position: | chr25:1735643-1735350 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 103, 74 |
| Conread position: | 1-286 |
| Cow position: | chr25:2110751-2111034 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 96, 27 |
| Conread position: | 1-292 |
| Cow position: | chr25:13569500-13569199 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 298 |
| Conread position: | 1-293 |
| Cow position: | chr25:31733065-31732762 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 23 |
| Conread position: | 1-296 |
| Cow position: | chr25:21245939-21245627 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 229 |
| Conread position: | 1-304 |
| Cow position: | chr25:12204136-12204454 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 223 |
| Conread position: | 1-326 |
| Cow position: | chr25:14834001-14833663 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 61, 35 |
| Conread position: | 1-336 |
| Cow position: | chr25:17658282-17658622 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 135 |
| Conread position: | 1-337 |
| Cow position: | chr25:36124367-36124697 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 258, 17 |
| Conread position: | 1-397 |
| Cow position: | chr25:2498930-2499340 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 42, 37 |
| Conread position: | 1-397 |
| Cow position: | chr25:26087183-26087593 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 24 |
| Conread position: | 1-398 |
| Cow position: | chr25:6464361-6463958 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 37 |
| Conread position: | 1-399 |
| Cow position: | chr25:8120444-8120854 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 287 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 143, 293 |
| Conread position: | 1-399 |
| Cow position: | chr25:11437135-11436733 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 1-399 |
| Cow position: | chr25:13325269-13325654 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 76 |
| Conread position: | 1-399 |
| Cow position: | chr25:20007788-20008207 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 54, 176 |
| Conread position: | 2-167 |
| Cow position: | chr25:11051051-11051211 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 2-296 |
| Cow position: | chr25:20394875-20395169 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 86 |
| Conread position: | 2-337 |
| Cow position: | chr25:14791424-14791769 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 54 |
| Conread position: | 3-190 |
| Cow position: | chr25:27593969-27594165 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 3-251 |
| Cow position: | chr25:26238538-26238799 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 40, 214 |
| Conread position: | 3-252 |
| Cow position: | chr25:18490744-18491004 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 100, 34 |
| Conread position: | 3-299 |
| Cow position: | chr25:10137776-10138070 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 100, 53 |
| Conread position: | 3-306 |
| Cow position: | chr25:20060359-20060041 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 236 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 94, 53 |
| Conread position: | 3-392 |
| Cow position: | chr25:1837912-1838308 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 53 |
| Conread position: | 7-299 |
| Cow position: | chr25:26654580-26654887 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 45 |
| Conread position: | 10-399 |
| Cow position: | chr25:11585187-11585592 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 278 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 76, 299 |
| Conread position: | 16-301 |
| Cow position: | chr25:41364297-41364006 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 84, 199 |
| Conread position: | 16-381 |
| Cow position: | chr25:12097525-12097896 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 256 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 77, 46 |
| Conread position: | 18-394 |
| Cow position: | chr25:23053241-23053626 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 85, 10 |
| Conread position: | 25-312 |
| Cow position: | chr25:8347200-8347497 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 270 |
| Conread position: | 34-352 |
| Cow position: | chr25:15319619-15319947 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 264 |
| Conread position: | 47-399 |
| Cow position: | chr25:21895174-21894811 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 20, 50 |
| Conread position: | 49-253 |
| Cow position: | chr25:24168184-24167971 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 17, 54 |
| Conread position: | 51-398 |
| Cow position: | chr25:20348575-20348942 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 52-294 |
| Cow position: | chr25:10366034-10365779 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 22, 31 |
| Conread position: | 61-336 |
| Cow position: | chr25:36535705-36535422 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 83, 41 |
| Conread position: | 61-399 |
| Cow position: | chr25:28188224-28187871 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 9, 249 |
| Conread position: | 63-299 |
| Cow position: | chr25:22297288-22297042 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 39, 98 |
| Conread position: | 64-260 |
| Cow position: | chr25:21266736-21266947 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 64-261 |
| Cow position: | chr25:17712264-17712475 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 64-348 |
| Cow position: | chr25:22203960-22203661 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 33, 208 |
| Conread position: | 65-295 |
| Cow position: | chr25:35625440-35625208 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 79, 37 |
| Conread position: | 65-296 |
| Cow position: | chr25:35332904-35333136 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 71, 37 |
| Conread position: | 65-337 |
| Cow position: | chr25:12824282-12824005 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 65-388 |
| Cow position: | chr25:20785850-20785523 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 79, 37 |
| Conread position: | 65-398 |
| Cow position: | chr25:35612570-35612240 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 40, 100 |
| Conread position: | 67-186 |
| Cow position: | chr25:8961196-8961319 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 67-299 |
| Cow position: | chr25:35344771-35345007 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 36, 179 |
| Conread position: | 71-398 |
| Cow position: | chr25:17566324-17566660 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 32, 220 |
| Conread position: | 74-235 |
| Cow position: | chr25:433336-433161 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 29 |
| Conread position: | 74-394 |
| Cow position: | chr25:18487414-18487737 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 23, 46 |
| Conread position: | 75-388 |
| Cow position: | chr25:12081574-12081259 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 25, 58 |
| Conread position: | 76-292 |
| Cow position: | chr25:7581685-7581453 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 66, 225 |
| Conread position: | 76-296 |
| Cow position: | chr25:16001779-16001548 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 28, 226 |
| Conread position: | 79-246 |
| Cow position: | chr25:11666401-11666578 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 80-299 |
| Cow position: | chr25:38135493-38135726 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 144 |
| Conread position: | 81-292 |
| Cow position: | chr25:4002543-4002773 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 22, 147 |
| Conread position: | 88-255 |
| Cow position: | chr25:24008423-24008242 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 93-399 |
| Cow position: | chr25:12840958-12840644 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 88, 57 |
| Conread position: | 95-398 |
| Cow position: | chr25:21289102-21289418 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 49, 201 |
| Conread position: | 96-394 |
| Cow position: | chr25:38425128-38425430 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 200 |
| Conread position: | 97-280 |
| Cow position: | chr25:61421-61619 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 99-280 |
| Cow position: | chr25:6256172-6255976 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 103-388 |
| Cow position: | chr25:10218281-10217986 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 31, 174 |
| Conread position: | 127-399 |
| Cow position: | chr25:16714480-16714196 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 17, 179 |
| Conread position: | 130-399 |
| Cow position: | chr25:20133518-20133240 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 142 |
| Conread position: | 145-398 |
| Cow position: | chr25:17342264-17342531 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 156 |
| Conread position: | 178-398 |
| Cow position: | chr25:5920796-5921017 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 82, 134 |
Show alignments to all cow chromosomes.