Cow genome map

Conread name: reje03b_g17.y1

Conread position: 1-187
Cow position: chr27:9337800-9337615 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 144
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 102, 55

Conread position: 1-251
Cow position: chr27:15342845-15343083 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 195
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 69, 53

Conread position: 1-261
Cow position: chr27:8629587-8629857 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 188
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 102, 124

Conread position: 1-261
Cow position: chr27:26856924-26857180 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 112

Conread position: 1-282
Cow position: chr27:15315776-15315497 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 89

Conread position: 1-286
Cow position: chr27:30177281-30177588 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 223
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 68, 0

Conread position: 1-294
Cow position: chr27:732850-732551 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 226
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 143, 55

Conread position: 1-296
Cow position: chr27:23070076-23070382 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 222
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 154, 62

Conread position: 1-300
Cow position: chr27:23128741-23128431 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 221
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 96, 79

Conread position: 1-303
Cow position: chr27:26833460-26833167 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 143, 50

Conread position: 1-394
Cow position: chr27:26581159-26581551 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 276
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 96, 156

Conread position: 1-395
Cow position: chr27:24227506-24227915 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 266

Conread position: 1-396
Cow position: chr27:25380284-25379871 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 301

Conread position: 1-397
Cow position: chr27:13317678-13318092 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 283
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 102, 67

Conread position: 1-398
Cow position: chr27:15871449-15871042 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 285

Conread position: 1-398
Cow position: chr27:21408263-21408682 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 296
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 41, 7

Conread position: 1-399
Cow position: chr27:19388304-19387899 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 283
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 107, 74

Conread position: 1-399
Cow position: chr27:27038553-27038957 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 320

Conread position: 2-337
Cow position: chr27:8291724-8292059 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 252

Conread position: 2-337
Cow position: chr27:27040883-27040544 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 251
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 101, 34

Conread position: 2-399
Cow position: chr27:1353881-1353463 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 115

Conread position: 3-296
Cow position: chr27:8942407-8942705 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 220
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 95, 32

Conread position: 3-296
Cow position: chr27:9090516-9090823 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 299

Conread position: 3-296
Cow position: chr27:25791097-25790781 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 225
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 3-299
Cow position: chr27:27019818-27020128 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 53

Conread position: 3-301
Cow position: chr27:29400102-29399787 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 224
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 20, 58

Conread position: 3-315
Cow position: chr27:815650-815321 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 232
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 100, 160

Conread position: 3-336
Cow position: chr27:21977852-21978192 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 242
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 110, 289

Conread position: 3-336
Cow position: chr27:30362528-30362189 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 125

Conread position: 3-337
Cow position: chr27:17473107-17472750 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 18

Conread position: 3-394
Cow position: chr27:11535813-11536220 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 53

Conread position: 3-394
Cow position: chr27:26427843-26428247 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 272

Conread position: 3-398
Cow position: chr27:22426544-22426951 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 274
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 16, 100

Conread position: 3-399
Cow position: chr27:29831403-29831817 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 107

Conread position: 4-397
Cow position: chr27:29799226-29798837 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 267
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 100, 29

Conread position: 4-399
Cow position: chr27:15867671-15867270 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 85

Conread position: 4-399
Cow position: chr27:30583021-30582615 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 43

Conread position: 8-297
Cow position: chr27:2957685-2957384 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 221
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 9, 57

Conread position: 10-261
Cow position: chr27:11412994-11412735 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 191
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 137, 92

Conread position: 21-320
Cow position: chr27:31372713-31373024 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 52

Conread position: 22-399
Cow position: chr27:6550717-6550344 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 194

Conread position: 25-296
Cow position: chr27:31147410-31147692 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 204
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 74, 243

Conread position: 37-258
Cow position: chr27:26436623-26436862 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 171
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 110, 0

Conread position: 37-298
Cow position: chr27:23930215-23929953 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 192
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 107, 175

Conread position: 37-388
Cow position: chr27:30890537-30890182 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 251
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 60, 30

Conread position: 46-280
Cow position: chr27:28518527-28518289 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 186
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 98, 171

Conread position: 46-308
Cow position: chr27:11081438-11081158 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 207
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 52, 74

Conread position: 46-336
Cow position: chr27:27843750-27844055 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 57, 186

Conread position: 51-296
Cow position: chr27:14902412-14902676 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 196
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 99, 0

Conread position: 51-394
Cow position: chr27:24331963-24331606 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 254
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 48, 258

Conread position: 51-399
Cow position: chr27:6500302-6499941 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 256
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 46, 224

Conread position: 53-299
Cow position: chr27:12246895-12246635 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 187
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 50, 249

Conread position: 56-271
Cow position: chr27:7934931-7935151 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 165
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 47, 205

Conread position: 56-291
Cow position: chr27:28921664-28921915 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 192
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 37, 172

Conread position: 59-261
Cow position: chr27:707176-706967 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 5, 13

Conread position: 59-261
Cow position: chr27:28164181-28164390 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 157
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 5, 79

Conread position: 64-251
Cow position: chr27:2011879-2012078 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 33, 56

Conread position: 64-252
Cow position: chr27:21418842-21419044 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 145
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 65-290
Cow position: chr27:22498776-22498542 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 40, 65

Conread position: 65-293
Cow position: chr27:28001598-28001830 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 8, 24

Conread position: 65-294
Cow position: chr27:12596978-12596746 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 176
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 76, 7

Conread position: 65-294
Cow position: chr27:27259831-27259592 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 176
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 85, 209

Conread position: 65-399
Cow position: chr27:2592764-2592422 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 86

Conread position: 66-295
Cow position: chr27:28038115-28038362 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 179
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 38, 0

Conread position: 68-388
Cow position: chr27:26218915-26218593 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 228
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 33, 18

Conread position: 69-399
Cow position: chr27:30354126-30354464 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 238
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 81, 33

Conread position: 71-397
Cow position: chr27:27640775-27641129 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 257
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 79, 325

Conread position: 72-252
Cow position: chr27:26163594-26163409 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 26, 57

Conread position: 73-258
Cow position: chr27:22179582-22179775 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 151
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 31, 147

Conread position: 73-262
Cow position: chr27:19543694-19543893 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 140
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 73-387
Cow position: chr27:20553932-20553624 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 224
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 30, 191

Conread position: 73-388
Cow position: chr27:30765247-30764922 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 228
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 25, 147

Conread position: 73-399
Cow position: chr27:10307080-10307417 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 237
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 30, 236

Conread position: 75-296
Cow position: chr27:17926424-17926645 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 178
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 69, 143

Conread position: 75-399
Cow position: chr27:26239237-26238905 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 226
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 28, 51

Conread position: 77-399
Cow position: chr27:30359606-30359287 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 230
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 22, 52

Conread position: 80-275
Cow position: chr27:29283203-29283410 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 67, 9

Conread position: 81-332
Cow position: chr27:1498521-1498262 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 187
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 19, 212

Conread position: 83-388
Cow position: chr27:20354785-20354488 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 227
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 20, 78

Conread position: 85-399
Cow position: chr27:19685511-19685833 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 220
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 25, 141

Conread position: 89-296
Cow position: chr27:21569644-21569863 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 164
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 14, 134

Conread position: 89-321
Cow position: chr27:18030860-18031109 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 184
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 8, 23

Conread position: 90-395
Cow position: chr27:30915200-30914894 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 210
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 7, 201

Conread position: 91-300
Cow position: chr27:30843881-30844101 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 158
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 67

Conread position: 95-398
Cow position: chr27:11296450-11296151 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 211
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 49, 111

Conread position: 97-299
Cow position: chr27:20592174-20591957 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 167
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 47, 209

Conread position: 98-335
Cow position: chr27:30670927-30670684 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 48, 112

Conread position: 98-391
Cow position: chr27:18739577-18739265 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 214
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 49, 231

Conread position: 102-295
Cow position: chr27:13252195-13251987 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 105-296
Cow position: chr27:27550565-27550764 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 140
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 106-386
Cow position: chr27:30988979-30988691 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 203
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 38, 207

Conread position: 125-394
Cow position: chr27:30871897-30872171 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 197
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 99

Conread position: 126-399
Cow position: chr27:23891100-23890818 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 195
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 7, 94

Conread position: 137-337
Cow position: chr27:31159942-31159742 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 142
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 5, 75

Conread position: 147-399
Cow position: chr27:23545191-23545450 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 168
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 148-399
Cow position: chr27:30389166-30389417 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 176
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 31, 49

Conread position: 178-392
Cow position: chr27:11151772-11151556 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 150
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 79, 120

Conread position: 180-388
Cow position: chr27:22559727-22559932 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 148
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 83, 111

Show alignments to all cow chromosomes.