Cow genome map

Conread name: reje03b_g17.y1

Conread position: 1-253
Cow position: chr29:15944237-15944504 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 1-261
Cow position: chr29:1933892-1933615 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 203
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 48, 0

Conread position: 1-261
Cow position: chr29:2415139-2414875 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 201
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 146, 35

Conread position: 1-262
Cow position: chr29:26519791-26519521 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 201
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 98, 15

Conread position: 1-277
Cow position: chr29:29477364-29477076 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 200
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 99, 242

Conread position: 1-278
Cow position: chr29:2136431-2136153 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 207
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 103, 214

Conread position: 1-280
Cow position: chr29:12798600-12798880 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 210
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 102, 72

Conread position: 1-291
Cow position: chr29:28195848-28195540 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 225
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 102, 55

Conread position: 1-294
Cow position: chr29:32963208-32963532 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 226
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 59, 0

Conread position: 1-296
Cow position: chr29:19428341-19428636 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 217
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 143, 54

Conread position: 1-296
Cow position: chr29:31926622-31926312 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 136

Conread position: 1-296
Cow position: chr29:39567354-39567663 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 214

Conread position: 1-296
Cow position: chr29:40583465-40583770 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 214
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 96, 217

Conread position: 1-298
Cow position: chr29:27005553-27005848 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 206
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 40, 50

Conread position: 1-299
Cow position: chr29:9911830-9912152 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 228
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 42, 233

Conread position: 1-336
Cow position: chr29:44902034-44901693 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 245
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 102, 125

Conread position: 1-383
Cow position: chr29:3704530-3704140 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 270
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 146, 8

Conread position: 1-386
Cow position: chr29:10156621-10156244 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 149

Conread position: 1-388
Cow position: chr29:26616068-26615657 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 289
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 64, 303

Conread position: 1-391
Cow position: chr29:2744604-2744201 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 289

Conread position: 1-393
Cow position: chr29:27833655-27834056 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 271
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 102, 223

Conread position: 1-399
Cow position: chr29:4120520-4120928 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 293
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 141, 56

Conread position: 1-399
Cow position: chr29:6293796-6293404 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 56

Conread position: 1-399
Cow position: chr29:17409002-17409409 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 66

Conread position: 1-399
Cow position: chr29:25088403-25088817 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 298
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 60, 255

Conread position: 1-399
Cow position: chr29:32290270-32290683 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 281
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 96, 279

Conread position: 1-399
Cow position: chr29:32800039-32799638 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 303

Conread position: 2-186
Cow position: chr29:6014766-6014958 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 65, 139

Conread position: 2-246
Cow position: chr29:686522-686262 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 0

Conread position: 2-248
Cow position: chr29:21933457-21933186 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 199
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 47, 58

Conread position: 2-261
Cow position: chr29:20674139-20673860 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 2-399
Cow position: chr29:22935953-22936344 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 23

Conread position: 3-286
Cow position: chr29:45650668-45650375 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 217
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 142, 18

Conread position: 3-296
Cow position: chr29:18212307-18212017 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 50

Conread position: 3-337
Cow position: chr29:37785516-37785160 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 257
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 63, 288

Conread position: 3-398
Cow position: chr29:38581639-38582041 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 281
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 144, 113

Conread position: 5-394
Cow position: chr29:26017839-26017433 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 288
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 98, 120

Conread position: 5-399
Cow position: chr29:87341-86937 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 35

Conread position: 6-253
Cow position: chr29:10838624-10838881 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 183
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 37, 13

Conread position: 21-258
Cow position: chr29:44310340-44310090 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 175
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 78, 47

Conread position: 21-398
Cow position: chr29:4625305-4624926 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 217

Conread position: 28-337
Cow position: chr29:26734728-26735041 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 228
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 73, 145

Conread position: 35-297
Cow position: chr29:17402-17133 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 196
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 65, 19

Conread position: 36-272
Cow position: chr29:13615946-13615684 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 190
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 29, 93

Conread position: 42-399
Cow position: chr29:17222116-17222487 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 256
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 36, 252

Conread position: 43-336
Cow position: chr29:39111595-39111300 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 214
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 60, 13

Conread position: 46-299
Cow position: chr29:750185-749929 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 187
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 142, 56

Conread position: 46-387
Cow position: chr29:26771154-26771501 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 244
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 142, 111

Conread position: 48-295
Cow position: chr29:6844914-6844655 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 250

Conread position: 51-337
Cow position: chr29:699891-699603 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 214
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 96, 38

Conread position: 51-397
Cow position: chr29:22162539-22162177 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 245
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 29, 175

Conread position: 55-282
Cow position: chr29:4065811-4066049 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 177
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 31, 9

Conread position: 63-399
Cow position: chr29:23697711-23698052 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 232
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 89, 30

Conread position: 64-332
Cow position: chr29:19338710-19338997 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 209
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 35, 255

Conread position: 64-335
Cow position: chr29:2984618-2984901 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 210
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 80, 38

Conread position: 64-336
Cow position: chr29:31928710-31929000 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 208
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 34, 60

Conread position: 64-386
Cow position: chr29:35797623-35797947 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 223
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 9, 143

Conread position: 64-399
Cow position: chr29:25333722-25333387 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 231
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 112, 223

Conread position: 65-292
Cow position: chr29:22175425-22175661 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 175
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 82, 37

Conread position: 65-296
Cow position: chr29:94813-94577 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 183
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 79, 37

Conread position: 66-351
Cow position: chr29:29769613-29769325 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 213
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 37, 91

Conread position: 67-292
Cow position: chr29:6217814-6217575 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 176
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 35, 0

Conread position: 67-392
Cow position: chr29:7956250-7955923 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 221
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 34, 201

Conread position: 67-394
Cow position: chr29:22069013-22068671 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 240
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 42, 88

Conread position: 67-399
Cow position: chr29:12679888-12680230 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 242
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 10, 159

Conread position: 68-375
Cow position: chr29:41747179-41747498 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 222
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 76, 25

Conread position: 68-399
Cow position: chr29:41530585-41530924 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 239
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 81, 231

Conread position: 70-303
Cow position: chr29:4194384-4194133 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 186
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 25, 0

Conread position: 73-285
Cow position: chr29:2522318-2522534 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 26, 70

Conread position: 73-295
Cow position: chr29:37599464-37599234 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 71, 215

Conread position: 73-311
Cow position: chr29:19389226-19389476 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 186
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 24, 226

Conread position: 74-399
Cow position: chr29:35677801-35677469 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 224
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 73, 38

Conread position: 75-399
Cow position: chr29:34297823-34297494 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 223
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 22, 226

Conread position: 76-292
Cow position: chr29:12784212-12783983 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 173
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 28, 145

Conread position: 77-399
Cow position: chr29:22613179-22613504 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 223
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 70, 26

Conread position: 81-243
Cow position: chr29:13458810-13458980 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 66, 11

Conread position: 86-336
Cow position: chr29:44378665-44378403 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 187
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 58, 221

Conread position: 87-299
Cow position: chr29:20903534-20903309 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 166
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 16, 110

Conread position: 91-399
Cow position: chr29:25474665-25474997 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 231
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 6, 244

Conread position: 93-280
Cow position: chr29:11704883-11705083 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 95-335
Cow position: chr29:42886143-42886399 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 184
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 49, 201

Conread position: 96-280
Cow position: chr29:16309514-16309702 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 50, 119

Conread position: 96-394
Cow position: chr29:21706611-21706330 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 205
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 51, 82

Conread position: 96-399
Cow position: chr29:4520099-4520410 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 221
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 48, 210

Conread position: 97-399
Cow position: chr29:24103784-24103467 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 217
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 47, 151

Conread position: 102-332
Cow position: chr29:39642946-39643183 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 175
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 42, 63

Conread position: 107-278
Cow position: chr29:3711161-3711349 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 37, 0

Conread position: 115-387
Cow position: chr29:6337445-6337725 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 189
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 29, 189

Conread position: 125-399
Cow position: chr29:30440718-30441011 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 204
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 25, 184

Conread position: 128-399
Cow position: chr29:11054058-11053786 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 189
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 16, 80

Conread position: 144-399
Cow position: chr29:11646918-11647168 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 177
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 36, 58

Conread position: 190-398
Cow position: chr29:17297002-17297209 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 144
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 70, 97

Conread position: 195-399
Cow position: chr29:21941472-21941675 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 65, 90

Show alignments to all cow chromosomes.