Cow genome map
| Conread name: | reje03b_g17.y1 |
| Conread position: | 1-167 |
| Cow position: | chr5:3696091-3696257 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 102, 35 |
| Conread position: | 1-186 |
| Cow position: | chr5:63967946-63967763 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 97, 29 |
| Conread position: | 1-186 |
| Cow position: | chr5:75259523-75259712 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 1-252 |
| Cow position: | chr5:50729194-50729457 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 47 |
| Conread position: | 1-252 |
| Cow position: | chr5:59759088-59759342 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 38, 21 |
| Conread position: | 1-255 |
| Cow position: | chr5:15462420-15462675 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 143, 55 |
| Conread position: | 1-255 |
| Cow position: | chr5:56442977-56443246 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 132, 24 |
| Conread position: | 1-261 |
| Cow position: | chr5:3204533-3204803 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 102, 55 |
| Conread position: | 1-261 |
| Cow position: | chr5:47559841-47559570 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 96, 124 |
| Conread position: | 1-282 |
| Cow position: | chr5:27154719-27155014 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 77, 42 |
| Conread position: | 1-290 |
| Cow position: | chr5:54405199-54404891 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 69 |
| Conread position: | 1-290 |
| Cow position: | chr5:65933234-65932930 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 229 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 28, 126 |
| Conread position: | 1-291 |
| Cow position: | chr5:21040278-21039975 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 57 |
| Conread position: | 1-291 |
| Cow position: | chr5:42747857-42748156 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 143, 35 |
| Conread position: | 1-291 |
| Cow position: | chr5:44994350-44994041 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 53, 271 |
| Conread position: | 1-293 |
| Cow position: | chr5:16184787-16185087 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 55 |
| Conread position: | 1-293 |
| Cow position: | chr5:31020419-31020138 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 102, 111 |
| Conread position: | 1-295 |
| Cow position: | chr5:60715660-60715359 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 45 |
| Conread position: | 1-296 |
| Cow position: | chr5:6130051-6130359 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 1-296 |
| Cow position: | chr5:35145045-35145351 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 76, 222 |
| Conread position: | 1-296 |
| Cow position: | chr5:49820837-49821145 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 102, 270 |
| Conread position: | 1-296 |
| Cow position: | chr5:61839883-61840195 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 144, 105 |
| Conread position: | 1-296 |
| Cow position: | chr5:65776697-65776378 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 73, 42 |
| Conread position: | 1-299 |
| Cow position: | chr5:7140388-7140102 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 143, 35 |
| Conread position: | 1-299 |
| Cow position: | chr5:52165484-52165173 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 235 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 1-299 |
| Cow position: | chr5:70290180-70290483 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 102, 281 |
| Conread position: | 1-300 |
| Cow position: | chr5:37645760-37646079 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 76, 58 |
| Conread position: | 1-300 |
| Cow position: | chr5:43858733-43858428 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 145 |
| Conread position: | 1-301 |
| Cow position: | chr5:26990093-26990400 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 38, 20 |
| Conread position: | 1-304 |
| Cow position: | chr5:7921687-7921387 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 66, 172 |
| Conread position: | 1-309 |
| Cow position: | chr5:28330634-28330315 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 55 |
| Conread position: | 1-320 |
| Cow position: | chr5:62827060-62826729 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 223 |
| Conread position: | 1-336 |
| Cow position: | chr5:30486946-30487281 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 1-336 |
| Cow position: | chr5:42777470-42777804 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 102, 55 |
| Conread position: | 1-351 |
| Cow position: | chr5:15598538-15598181 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 27 |
| Conread position: | 1-388 |
| Cow position: | chr5:5111382-5110983 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 276 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 102, 224 |
| Conread position: | 1-388 |
| Cow position: | chr5:16206447-16206064 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 79 |
| Conread position: | 1-396 |
| Cow position: | chr5:3242770-3242382 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 74, 89 |
| Conread position: | 1-398 |
| Cow position: | chr5:33414710-33414310 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 103 |
| Conread position: | 1-398 |
| Cow position: | chr5:37190398-37189996 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 145, 55 |
| Conread position: | 1-399 |
| Cow position: | chr5:9894429-9894021 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 98, 34 |
| Conread position: | 1-399 |
| Cow position: | chr5:14904361-14903966 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 143, 62 |
| Conread position: | 1-399 |
| Cow position: | chr5:18573865-18574274 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 1-399 |
| Cow position: | chr5:26094475-26094064 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 289 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 28, 272 |
| Conread position: | 1-399 |
| Cow position: | chr5:28224150-28224554 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 118 |
| Conread position: | 1-399 |
| Cow position: | chr5:29827748-29828149 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 217 |
| Conread position: | 1-399 |
| Cow position: | chr5:32697102-32696721 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 279 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 102, 53 |
| Conread position: | 1-399 |
| Cow position: | chr5:45226134-45225715 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 142 |
| Conread position: | 1-399 |
| Cow position: | chr5:54311018-54311438 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 288 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 72, 137 |
| Conread position: | 1-399 |
| Cow position: | chr5:58855797-58856204 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 303 |
| Conread position: | 1-399 |
| Cow position: | chr5:67932769-67932370 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 282 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 48, 292 |
| Conread position: | 2-187 |
| Cow position: | chr5:15362765-15362956 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 2-325 |
| Cow position: | chr5:28927901-28927558 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 308 |
| Conread position: | 2-352 |
| Cow position: | chr5:35762986-35763324 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 168 |
| Conread position: | 2-399 |
| Cow position: | chr5:39447839-39447433 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 247 |
| Conread position: | 3-187 |
| Cow position: | chr5:59873828-59873643 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 103, 61 |
| Conread position: | 3-261 |
| Cow position: | chr5:44054338-44054069 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 99, 53 |
| Conread position: | 3-261 |
| Cow position: | chr5:46104243-46103974 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 3-261 |
| Cow position: | chr5:47313170-47313442 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 199 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 3-281 |
| Cow position: | chr5:72564456-72564751 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 35 |
| Conread position: | 3-282 |
| Cow position: | chr5:45705744-45706036 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 238 |
| Conread position: | 3-295 |
| Cow position: | chr5:37377565-37377865 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 53, 109 |
| Conread position: | 3-296 |
| Cow position: | chr5:26377967-26377664 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 53 |
| Conread position: | 3-298 |
| Cow position: | chr5:42667695-42667384 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 266 |
| Conread position: | 3-299 |
| Cow position: | chr5:14420648-14420336 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 248 |
| Conread position: | 3-299 |
| Cow position: | chr5:23856466-23856155 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 3-337 |
| Cow position: | chr5:27015390-27015720 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 96, 6 |
| Conread position: | 3-350 |
| Cow position: | chr5:21828553-21828921 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 57, 303 |
| Conread position: | 3-388 |
| Cow position: | chr5:74643964-74643587 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 147, 155 |
| Conread position: | 3-392 |
| Cow position: | chr5:42845903-42845498 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 107 |
| Conread position: | 3-394 |
| Cow position: | chr5:34506229-34505829 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 238 |
| Conread position: | 3-399 |
| Cow position: | chr5:14550890-14550482 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 227 |
| Conread position: | 3-399 |
| Cow position: | chr5:65752556-65752962 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 79 |
| Conread position: | 5-376 |
| Cow position: | chr5:59225-58853 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 142, 31 |
| Conread position: | 6-286 |
| Cow position: | chr5:44583415-44583134 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 23 |
| Conread position: | 6-297 |
| Cow position: | chr5:72149951-72150252 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 91, 58 |
| Conread position: | 7-255 |
| Cow position: | chr5:23140877-23140615 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 7-278 |
| Cow position: | chr5:4710440-4710161 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 63, 49 |
| Conread position: | 8-254 |
| Cow position: | chr5:33661556-33661816 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 89, 237 |
| Conread position: | 8-277 |
| Cow position: | chr5:56467406-56467685 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 129, 86 |
| Conread position: | 8-293 |
| Cow position: | chr5:39094255-39094557 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 9-280 |
| Cow position: | chr5:3491912-3492183 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 37 |
| Conread position: | 11-261 |
| Cow position: | chr5:50722755-50723015 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 90, 122 |
| Conread position: | 16-282 |
| Cow position: | chr5:31469873-31469592 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 101 |
| Conread position: | 17-262 |
| Cow position: | chr5:63917696-63917443 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 133, 39 |
| Conread position: | 21-388 |
| Cow position: | chr5:9090305-9089932 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 275 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 123, 35 |
| Conread position: | 24-399 |
| Cow position: | chr5:17999778-17999394 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 73, 278 |
| Conread position: | 25-399 |
| Cow position: | chr5:53855423-53855808 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 73, 89 |
| Conread position: | 28-258 |
| Cow position: | chr5:59298237-59297996 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 69, 215 |
| Conread position: | 36-388 |
| Cow position: | chr5:65601193-65601548 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 258 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 63, 19 |
| Conread position: | 38-399 |
| Cow position: | chr5:32394330-32394701 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 53, 44 |
| Conread position: | 38-399 |
| Cow position: | chr5:42063935-42064307 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 260 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 109, 122 |
| Conread position: | 46-186 |
| Cow position: | chr5:48519372-48519514 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 58, 102 |
| Conread position: | 51-261 |
| Cow position: | chr5:26370452-26370661 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 96, 45 |
| Conread position: | 51-320 |
| Cow position: | chr5:43474592-43474868 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 56, 219 |
| Conread position: | 55-332 |
| Cow position: | chr5:8024443-8024158 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 9, 37 |
| Conread position: | 57-299 |
| Cow position: | chr5:65588463-65588707 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 87, 45 |
| Conread position: | 58-300 |
| Cow position: | chr5:59326076-59325826 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 86, 156 |
| Conread position: | 61-262 |
| Cow position: | chr5:46323057-46322843 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 61-298 |
| Cow position: | chr5:32956335-32956090 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 119, 41 |
| Conread position: | 62-261 |
| Cow position: | chr5:4347955-4347762 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 116, 40 |
| Conread position: | 62-261 |
| Cow position: | chr5:58229459-58229671 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 64-294 |
| Cow position: | chr5:58144848-58144598 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 64-317 |
| Cow position: | chr5:72310471-72310730 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 13, 155 |
| Conread position: | 64-320 |
| Cow position: | chr5:34115420-34115676 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 39, 99 |
| Conread position: | 64-394 |
| Cow position: | chr5:6839321-6838982 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 198 |
| Conread position: | 64-395 |
| Cow position: | chr5:26477235-26476920 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 92 |
| Conread position: | 64-399 |
| Cow position: | chr5:4617135-4617468 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 39, 24 |
| Conread position: | 64-399 |
| Cow position: | chr5:43992083-43992426 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 33, 80 |
| Conread position: | 65-332 |
| Cow position: | chr5:53835474-53835752 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 36, 21 |
| Conread position: | 65-399 |
| Cow position: | chr5:11668419-11668083 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 79, 136 |
| Conread position: | 66-296 |
| Cow position: | chr5:30639090-30638858 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 84, 36 |
| Conread position: | 67-293 |
| Cow position: | chr5:43738187-43737953 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 77, 23 |
| Conread position: | 67-336 |
| Cow position: | chr5:2500420-2500140 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 80, 35 |
| Conread position: | 67-336 |
| Cow position: | chr5:60126136-60126412 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 35, 22 |
| Conread position: | 68-336 |
| Cow position: | chr5:40109263-40109532 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 151 |
| Conread position: | 70-337 |
| Cow position: | chr5:54064543-54064816 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 28, 154 |
| Conread position: | 71-296 |
| Cow position: | chr5:36854977-36855209 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 32, 146 |
| Conread position: | 71-399 |
| Cow position: | chr5:41164853-41165190 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 247 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 32, 142 |
| Conread position: | 72-320 |
| Cow position: | chr5:56135203-56134941 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 31, 143 |
| Conread position: | 73-255 |
| Cow position: | chr5:24642955-24642766 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 145 |
| Conread position: | 73-286 |
| Cow position: | chr5:45036787-45037015 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 17, 157 |
| Conread position: | 73-290 |
| Cow position: | chr5:32963862-32963633 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 71, 183 |
| Conread position: | 73-294 |
| Cow position: | chr5:42744564-42744786 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 72, 30 |
| Conread position: | 73-350 |
| Cow position: | chr5:4032222-4031936 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 73-350 |
| Cow position: | chr5:34300692-34300972 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 31, 86 |
| Conread position: | 73-399 |
| Cow position: | chr5:17063327-17062979 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 25, 229 |
| Conread position: | 73-399 |
| Cow position: | chr5:37814390-37814728 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 26, 88 |
| Conread position: | 74-296 |
| Cow position: | chr5:21964059-21964294 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 42, 145 |
| Conread position: | 75-259 |
| Cow position: | chr5:16938239-16938043 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 75-291 |
| Cow position: | chr5:12709655-12709887 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 75-394 |
| Cow position: | chr5:64137020-64137353 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 235 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 21, 226 |
| Conread position: | 76-398 |
| Cow position: | chr5:36868515-36868836 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 21, 133 |
| Conread position: | 76-399 |
| Cow position: | chr5:3771616-3771948 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 28, 230 |
| Conread position: | 76-399 |
| Cow position: | chr5:30253515-30253843 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 68, 48 |
| Conread position: | 77-388 |
| Cow position: | chr5:56070624-56070950 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 67, 222 |
| Conread position: | 78-396 |
| Cow position: | chr5:65765340-65765030 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 19, 70 |
| Conread position: | 79-299 |
| Cow position: | chr5:56820487-56820256 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 24, 55 |
| Conread position: | 81-399 |
| Cow position: | chr5:5257522-5257186 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 16, 197 |
| Conread position: | 83-253 |
| Cow position: | chr5:15722277-15722108 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 85-346 |
| Cow position: | chr5:16025682-16025411 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 21, 184 |
| Conread position: | 86-399 |
| Cow position: | chr5:2309785-2309454 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 13, 222 |
| Conread position: | 88-399 |
| Cow position: | chr5:62142452-62142778 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 13, 157 |
| Conread position: | 93-398 |
| Cow position: | chr5:44049490-44049799 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 54, 201 |
| Conread position: | 94-282 |
| Cow position: | chr5:56518421-56518220 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 53, 94 |
| Conread position: | 95-296 |
| Cow position: | chr5:29212738-29212949 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 108 |
| Conread position: | 95-399 |
| Cow position: | chr5:11427452-11427131 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 49, 198 |
| Conread position: | 96-281 |
| Cow position: | chr5:43395347-43395152 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 45, 124 |
| Conread position: | 96-299 |
| Cow position: | chr5:40039980-40039764 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 48, 211 |
| Conread position: | 97-280 |
| Cow position: | chr5:57271473-57271277 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 97-399 |
| Cow position: | chr5:64758972-64758665 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 86, 118 |
| Conread position: | 101-395 |
| Cow position: | chr5:34977040-34976744 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 10 |
| Conread position: | 102-337 |
| Cow position: | chr5:8994769-8994525 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 42, 122 |
| Conread position: | 108-320 |
| Cow position: | chr5:69731320-69731529 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 36, 76 |
| Conread position: | 111-292 |
| Cow position: | chr5:1678204-1678396 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 122-399 |
| Cow position: | chr5:37808848-37808561 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 157-336 |
| Cow position: | chr5:76119415-76119593 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 103, 132 |
| Conread position: | 175-399 |
| Cow position: | chr5:38076600-38076381 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 52 |
| Conread position: | 177-398 |
| Cow position: | chr5:19523782-19524001 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 83, 99 |
| Conread position: | 180-296 |
| Cow position: | chr5:13717683-13717563 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 180-398 |
| Cow position: | chr5:19335899-19335680 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 80, 107 |
| Conread position: | 180-399 |
| Cow position: | chr5:14473529-14473302 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 20, 186 |
| Conread position: | 181-399 |
| Cow position: | chr5:65883887-65883670 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 79, 106 |
| Conread position: | 185-398 |
| Cow position: | chr5:64168347-64168138 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 77, 102 |
Show alignments to all cow chromosomes.