Cow genome map

Conread name: reje28b_a18.y1

Conread position: 369-578
Cow position: chrX:17795218-17795018 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 145
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 370-580
Cow position: chrX:31436707-31436509 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 154
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 50, 0

Conread position: 370-583
Cow position: chrX:44397249-44397047 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 112, 50

Conread position: 377-588
Cow position: chrX:18694691-18694900 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 57, 34

Conread position: 378-566
Cow position: chrX:10237683-10237864 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 42, 0

Conread position: 378-580
Cow position: chrX:38642472-38642284 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 378-581
Cow position: chrX:40269738-40269525 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 55, 42

Conread position: 378-584
Cow position: chrX:4612644-4612851 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 162
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 58, 33

Conread position: 378-588
Cow position: chrX:35382812-35383009 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 159
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 42, 0

Conread position: 378-588
Cow position: chrX:39220318-39220106 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 163
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 45, 56

Conread position: 379-560
Cow position: chrX:36039644-36039454 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 41

Conread position: 379-575
Cow position: chrX:45759898-45759711 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 41, 0

Conread position: 379-577
Cow position: chrX:7278135-7277949 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 379-577
Cow position: chrX:34238952-34238757 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 102, 41

Conread position: 379-583
Cow position: chrX:27074822-27075019 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 156
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 41, 0

Conread position: 380-571
Cow position: chrX:6640652-6640471 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 177, 40

Conread position: 380-583
Cow position: chrX:8327133-8326936 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 156
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 40, 0

Conread position: 380-584
Cow position: chrX:1122319-1122512 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 160
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 27, 0

Conread position: 381-565
Cow position: chrX:41363623-41363809 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 52, 39

Conread position: 381-583
Cow position: chrX:42927603-42927792 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 145
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 381-587
Cow position: chrX:21665009-21665213 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 87, 42

Conread position: 381-588
Cow position: chrX:34222940-34222743 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 27, 18

Conread position: 383-587
Cow position: chrX:15146974-15147165 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 156
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 31, 0

Conread position: 385-549
Cow position: chrX:24633924-24633761 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 29, 20

Conread position: 385-566
Cow position: chrX:7337070-7336890 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 26

Conread position: 385-583
Cow position: chrX:28837107-28836926 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 386-587
Cow position: chrX:44995722-44995526 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 152, 34

Conread position: 386-588
Cow position: chrX:27261412-27261218 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 159
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 166, 25

Conread position: 387-573
Cow position: chrX:46068543-46068717 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 146
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 11, 0

Conread position: 387-580
Cow position: chrX:46079309-46079120 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 81, 30

Conread position: 387-584
Cow position: chrX:40108292-40108488 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 82, 37

Conread position: 387-587
Cow position: chrX:33654622-33654816 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 35, 0

Conread position: 387-588
Cow position: chrX:27446904-27446713 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 33, 0

Conread position: 387-588
Cow position: chrX:35659015-35658826 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 24, 0

Conread position: 387-588
Cow position: chrX:38094305-38094489 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 159
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 23, 0

Conread position: 388-548
Cow position: chrX:41215543-41215389 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 388-550
Cow position: chrX:3494830-3494980 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 388-552
Cow position: chrX:23182747-23182920 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 46, 32

Conread position: 388-560
Cow position: chrX:42087046-42086883 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 388-563
Cow position: chrX:23485750-23485573 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 75, 32

Conread position: 388-565
Cow position: chrX:12963-12800 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 388-567
Cow position: chrX:41166609-41166777 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 32, 0

Conread position: 388-568
Cow position: chrX:4559954-4559782 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 140
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 32, 0

Conread position: 388-571
Cow position: chrX:41990903-41991090 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 81, 32

Conread position: 388-571
Cow position: chrX:42875429-42875256 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 146
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 32, 0

Conread position: 388-572
Cow position: chrX:5097574-5097756 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 150
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 94, 16

Conread position: 388-572
Cow position: chrX:31983358-31983542 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 63, 32

Conread position: 388-575
Cow position: chrX:27415368-27415540 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 144
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 32, 0

Conread position: 388-578
Cow position: chrX:597258-597436 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 388-579
Cow position: chrX:8869184-8869366 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 104, 32

Conread position: 388-579
Cow position: chrX:13177264-13177440 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 388-579
Cow position: chrX:14135895-14135716 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 388-579
Cow position: chrX:27431704-27431882 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 388-579
Cow position: chrX:28940464-28940278 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 140, 32

Conread position: 388-579
Cow position: chrX:29230227-29230035 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 66, 32

Conread position: 388-579
Cow position: chrX:34412068-34411882 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 61, 32

Conread position: 388-580
Cow position: chrX:27270589-27270410 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 147
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 136, 30

Conread position: 388-581
Cow position: chrX:34565505-34565320 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 83, 32

Conread position: 388-583
Cow position: chrX:2936173-2935989 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 138
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 388-583
Cow position: chrX:6599554-6599750 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 46, 32

Conread position: 388-583
Cow position: chrX:9251943-9252131 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 32, 0

Conread position: 388-583
Cow position: chrX:26881342-26881533 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 80, 32

Conread position: 388-583
Cow position: chrX:27145819-27145636 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 388-583
Cow position: chrX:27668742-27668926 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 32, 0

Conread position: 388-583
Cow position: chrX:31442619-31442797 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 32, 0

Conread position: 388-583
Cow position: chrX:32867090-32866907 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 388-583
Cow position: chrX:32877159-32877343 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 151
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 23, 0

Conread position: 388-583
Cow position: chrX:34314241-34314056 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 388-583
Cow position: chrX:34315747-34315551 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 44, 32

Conread position: 388-583
Cow position: chrX:37072606-37072421 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 34, 0

Conread position: 388-583
Cow position: chrX:38302034-38301841 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 155
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 69, 32

Conread position: 388-584
Cow position: chrX:11633902-11633713 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 150
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 32, 0

Conread position: 388-584
Cow position: chrX:41270747-41270955 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 80, 32

Conread position: 388-584
Cow position: chrX:42894142-42893957 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 32, 0

Conread position: 388-587
Cow position: chrX:3806898-3806710 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 158
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 35, 0

Conread position: 388-587
Cow position: chrX:4327962-4328155 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 153
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 17, 33

Conread position: 388-587
Cow position: chrX:6559236-6559420 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 388-587
Cow position: chrX:13924081-13923892 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 388-587
Cow position: chrX:24331997-24331804 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 32, 0

Conread position: 388-587
Cow position: chrX:30133104-30133290 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 149
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 26, 0

Conread position: 388-587
Cow position: chrX:37489949-37489747 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 153
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 75, 32

Conread position: 388-588
Cow position: chrX:7351521-7351327 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 46, 23

Conread position: 388-588
Cow position: chrX:11656298-11656108 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 32, 0

Conread position: 388-588
Cow position: chrX:19018608-19018804 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 154
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 80, 32

Conread position: 388-588
Cow position: chrX:23498443-23498650 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 28, 173

Conread position: 388-588
Cow position: chrX:24170505-24170702 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 155
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 80, 32

Conread position: 388-588
Cow position: chrX:25037212-25037014 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 80, 32

Conread position: 388-588
Cow position: chrX:27393798-27393999 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 155
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 46, 23

Conread position: 388-588
Cow position: chrX:27705807-27705613 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 39, 0

Conread position: 388-588
Cow position: chrX:29601609-29601801 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 32, 0

Conread position: 388-588
Cow position: chrX:35285394-35285200 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 154
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 32, 0

Conread position: 388-588
Cow position: chrX:38218933-38218741 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 123, 32

Conread position: 388-588
Cow position: chrX:38549667-38549472 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 157
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 6, 33

Conread position: 388-588
Cow position: chrX:42492301-42492496 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 159
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 80, 32

Conread position: 388-588
Cow position: chrX:42855683-42855485 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 158
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 80, 32

Conread position: 388-588
Cow position: chrX:48558966-48558773 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 137
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 388-591
Cow position: chrX:16323795-16323990 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 90, 32

Conread position: 388-591
Cow position: chrX:40649122-40648918 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 80, 32

Conread position: 389-520
Cow position: chrX:10479969-10479844 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 389-532
Cow position: chrX:43028448-43028315 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 389-556
Cow position: chrX:26881860-26882021 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 31, 0

Conread position: 389-559
Cow position: chrX:5915410-5915244 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 84, 31

Conread position: 389-561
Cow position: chrX:15100197-15100037 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 389-561
Cow position: chrX:27175219-27175052 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 44, 0

Conread position: 389-569
Cow position: chrX:37867652-37867477 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 170, 31

Conread position: 389-572
Cow position: chrX:33466841-33466661 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 58, 22

Conread position: 389-575
Cow position: chrX:35409971-35409792 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 35, 0

Conread position: 389-575
Cow position: chrX:36367715-36367895 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 93, 37

Conread position: 389-577
Cow position: chrX:12095552-12095734 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 31, 0

Conread position: 389-577
Cow position: chrX:37751892-37752068 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 389-577
Cow position: chrX:44123468-44123293 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 30, 0

Conread position: 389-581
Cow position: chrX:32330390-32330201 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 131, 31

Conread position: 389-582
Cow position: chrX:15546100-15545915 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 147
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 27, 0

Conread position: 389-582
Cow position: chrX:31729656-31729475 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 389-583
Cow position: chrX:22115095-22115285 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 79, 44

Conread position: 389-583
Cow position: chrX:32910316-32910136 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 149
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 31, 0

Conread position: 389-583
Cow position: chrX:38587626-38587811 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 22, 0

Conread position: 389-584
Cow position: chrX:2314399-2314588 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 155
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 104, 31

Conread position: 389-584
Cow position: chrX:4092141-4091955 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 21, 0

Conread position: 389-584
Cow position: chrX:10516473-10516284 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 148
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 31, 0

Conread position: 389-584
Cow position: chrX:12290937-12290750 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 31, 0

Conread position: 389-584
Cow position: chrX:20168774-20168589 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 22, 0

Conread position: 389-584
Cow position: chrX:20887430-20887610 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 107, 22

Conread position: 389-584
Cow position: chrX:34441234-34441423 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 31, 0

Conread position: 389-584
Cow position: chrX:35276205-35276016 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 31, 0

Conread position: 389-584
Cow position: chrX:44192223-44192416 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 151, 34

Conread position: 389-587
Cow position: chrX:4109404-4109212 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 149
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 31, 0

Conread position: 389-587
Cow position: chrX:4632635-4632830 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 114, 31

Conread position: 389-587
Cow position: chrX:19761968-19761782 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 147
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 30, 0

Conread position: 389-587
Cow position: chrX:26979572-26979761 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 94, 26

Conread position: 389-587
Cow position: chrX:27508805-27508994 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 93, 31

Conread position: 389-587
Cow position: chrX:35885513-35885699 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 149
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 31, 0

Conread position: 389-587
Cow position: chrX:36866392-36866201 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 147
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 31, 0

Conread position: 389-587
Cow position: chrX:37956064-37955875 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 147
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 22, 0

Conread position: 389-587
Cow position: chrX:38321164-38321354 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 138
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 389-587
Cow position: chrX:41790208-41790401 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 93, 31

Conread position: 389-587
Cow position: chrX:41941842-41941651 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 145
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 31, 0

Conread position: 389-587
Cow position: chrX:43008829-43008637 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 31, 0

Conread position: 389-587
Cow position: chrX:44055022-44054830 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 150
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 88, 31

Conread position: 389-587
Cow position: chrX:46910027-46909843 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 153
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 25, 0

Conread position: 389-588
Cow position: chrX:4645695-4645886 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 31, 0

Conread position: 389-588
Cow position: chrX:11653986-11653791 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 158
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 178, 31

Conread position: 389-588
Cow position: chrX:13122163-13121965 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 105, 31

Conread position: 389-588
Cow position: chrX:17524164-17524357 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 31, 0

Conread position: 389-588
Cow position: chrX:17956908-17956720 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 153
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 31, 0

Conread position: 389-588
Cow position: chrX:24365603-24365794 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 140
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 389-588
Cow position: chrX:25815680-25815874 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 79, 31

Conread position: 389-588
Cow position: chrX:30962656-30962850 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 110, 34

Conread position: 389-588
Cow position: chrX:31489740-31489547 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 150
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 31, 0

Conread position: 389-588
Cow position: chrX:40680834-40680641 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 156
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 34, 0

Conread position: 389-588
Cow position: chrX:41027379-41027186 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 154
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 31, 0

Conread position: 389-588
Cow position: chrX:41878718-41878903 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 25, 0

Conread position: 389-588
Cow position: chrX:42449794-42449987 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 150
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 31, 0

Conread position: 389-588
Cow position: chrX:46532271-46532468 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 158
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 84, 31

Conread position: 389-590
Cow position: chrX:11454393-11454211 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 389-590
Cow position: chrX:35681786-35681593 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 31, 0

Conread position: 389-591
Cow position: chrX:1960206-1960399 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 31, 0

Conread position: 390-560
Cow position: chrX:6480377-6480541 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 390-572
Cow position: chrX:6389297-6389124 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 137
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 30, 0

Conread position: 390-577
Cow position: chrX:876629-876804 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 390-582
Cow position: chrX:17498541-17498355 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 147
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 30, 0

Conread position: 390-583
Cow position: chrX:1175772-1175950 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 390-583
Cow position: chrX:19394773-19394585 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 30, 0

Conread position: 390-583
Cow position: chrX:25035163-25035350 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 30, 0

Conread position: 390-587
Cow position: chrX:31250608-31250416 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 43, 0

Conread position: 390-587
Cow position: chrX:34554942-34554751 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 34, 0

Conread position: 390-588
Cow position: chrX:5872550-5872344 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 44, 30

Conread position: 390-588
Cow position: chrX:42246963-42247155 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 156
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 30, 0

Conread position: 391-553
Cow position: chrX:11589150-11589305 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 391-563
Cow position: chrX:4169811-4169979 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 39, 32

Conread position: 391-567
Cow position: chrX:37867471-37867301 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 29, 0

Conread position: 391-572
Cow position: chrX:27442321-27442496 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 128
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 391-572
Cow position: chrX:29451328-29451508 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 67, 29

Conread position: 391-573
Cow position: chrX:42760470-42760294 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 391-574
Cow position: chrX:20345668-20345491 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 28, 0

Conread position: 391-579
Cow position: chrX:43115366-43115187 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 391-581
Cow position: chrX:13868921-13868736 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 105, 29

Conread position: 391-581
Cow position: chrX:42331490-42331318 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 146
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 20, 0

Conread position: 391-581
Cow position: chrX:42836398-42836215 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 29, 0

Conread position: 391-583
Cow position: chrX:9634975-9635158 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 78, 24

Conread position: 391-583
Cow position: chrX:23358900-23359079 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 391-583
Cow position: chrX:34398566-34398752 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 135
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 86, 29

Conread position: 391-584
Cow position: chrX:11781464-11781284 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 85, 29

Conread position: 391-584
Cow position: chrX:20339678-20339861 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 154
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 20, 0

Conread position: 391-584
Cow position: chrX:36283557-36283371 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 29, 0

Conread position: 391-585
Cow position: chrX:47100377-47100568 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 77, 28

Conread position: 391-587
Cow position: chrX:3580162-3579972 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 98, 29

Conread position: 391-587
Cow position: chrX:6407761-6407574 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 29, 0

Conread position: 391-587
Cow position: chrX:26843049-26843241 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 140
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 77, 29

Conread position: 391-587
Cow position: chrX:34420953-34420762 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 77, 29

Conread position: 391-587
Cow position: chrX:34544003-34543812 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 42, 0

Conread position: 391-587
Cow position: chrX:42432297-42432486 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 91, 29

Conread position: 391-587
Cow position: chrX:46588037-46587850 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 29, 0

Conread position: 391-588
Cow position: chrX:4268853-4269038 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 172, 29

Conread position: 391-588
Cow position: chrX:21328131-21327938 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 152
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 174, 29

Conread position: 391-588
Cow position: chrX:29478939-29478751 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 150
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 29, 0

Conread position: 391-588
Cow position: chrX:30672167-30672369 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 70, 29

Conread position: 391-588
Cow position: chrX:32821257-32821056 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 67, 29

Conread position: 392-569
Cow position: chrX:30840757-30840592 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 392-577
Cow position: chrX:31986356-31986536 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 149, 28

Conread position: 392-583
Cow position: chrX:20957455-20957270 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 146
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 28, 0

Conread position: 392-583
Cow position: chrX:48822126-48822310 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 150
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 28, 0

Conread position: 392-587
Cow position: chrX:8731310-8731122 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 148
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 28, 0

Conread position: 392-587
Cow position: chrX:27228345-27228154 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 151
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 113, 28

Conread position: 392-588
Cow position: chrX:16762984-16762798 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 127, 28

Conread position: 392-588
Cow position: chrX:41809959-41810141 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 34, 0

Conread position: 393-577
Cow position: chrX:8642260-8642084 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 27, 0

Conread position: 393-579
Cow position: chrX:30824200-30824025 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 27, 0

Conread position: 393-583
Cow position: chrX:14925488-14925308 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 27, 0

Conread position: 393-583
Cow position: chrX:32420426-32420244 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 393-583
Cow position: chrX:42380897-42381080 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 18, 0

Conread position: 395-588
Cow position: chrX:23113505-23113312 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 35, 25

Conread position: 395-588
Cow position: chrX:23562086-23561884 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 73, 25

Conread position: 395-588
Cow position: chrX:28877953-28878147 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 153
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 38, 25

Conread position: 395-590
Cow position: chrX:47755831-47756015 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 27, 0

Conread position: 396-587
Cow position: chrX:12309173-12309358 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 397-573
Cow position: chrX:36976163-36975993 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 23, 0

Conread position: 397-578
Cow position: chrX:40035228-40035405 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 168, 23

Conread position: 399-585
Cow position: chrX:31294360-31294542 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 149
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 67, 21

Conread position: 399-587
Cow position: chrX:22822264-22822074 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 132
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 83, 21

Conread position: 414-588
Cow position: chrX:39180039-39180206 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 6, 0

Conread position: 420-566
Cow position: chrX:25282846-25282989 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 32, 51

Conread position: 420-583
Cow position: chrX:29680070-29680229 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 22, 0

Conread position: 420-588
Cow position: chrX:25459541-25459707 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 91, 14

Conread position: 428-585
Cow position: chrX:46533119-46533275 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 428-588
Cow position: chrX:38226924-38227080 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 42, 0

Conread position: 429-588
Cow position: chrX:34503112-34502947 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 28, 0

Conread position: 430-579
Cow position: chrX:34532701-34532556 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 430-583
Cow position: chrX:169358-169513 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 136

Conread position: 430-588
Cow position: chrX:16575296-16575139 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 430-588
Cow position: chrX:23188606-23188753 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 432-574
Cow position: chrX:31252589-31252449 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 36, 0

Conread position: 440-582
Cow position: chrX:29733409-29733559 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 445-587
Cow position: chrX:6278327-6278470 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 446-587
Cow position: chrX:14599700-14599565 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 448-563
Cow position: chrX:40543355-40543469 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 20, 52

Conread position: 448-583
Cow position: chrX:9201715-9201580 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 448-588
Cow position: chrX:26205281-26205421 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 20, 32

Conread position: 448-588
Cow position: chrX:31829295-31829434 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 20, 0

Conread position: 448-588
Cow position: chrX:41068893-41068752 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 449-581
Cow position: chrX:32574482-32574351 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 449-588
Cow position: chrX:6259985-6260120 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 449-588
Cow position: chrX:27511593-27511455 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 450-583
Cow position: chrX:11181031-11181164 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 8

Conread position: 450-588
Cow position: chrX:25412071-25411934 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 18, 46

Conread position: 450-588
Cow position: chrX:37062418-37062558 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 451-578
Cow position: chrX:43730059-43730187 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 17, 0

Conread position: 451-580
Cow position: chrX:11717618-11717748 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 451-581
Cow position: chrX:23562798-23562666 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 451-581
Cow position: chrX:23574816-23574689 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 451-582
Cow position: chrX:31373701-31373569 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 451-584
Cow position: chrX:37129432-37129300 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 20, 0

Conread position: 452-584
Cow position: chrX:23860831-23860963 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 454-584
Cow position: chrX:9416524-9416653 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 455-587
Cow position: chrX:6265438-6265570 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 13, 97

Conread position: 456-588
Cow position: chrX:46072657-46072790 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 458-583
Cow position: chrX:6690102-6690228 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 10, 23

Conread position: 458-583
Cow position: chrX:31626823-31626941 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 458-584
Cow position: chrX:6222971-6223097 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 24, 10

Conread position: 459-588
Cow position: chrX:23266569-23266442 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 459-588
Cow position: chrX:38964263-38964135 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 460-583
Cow position: chrX:27667581-27667457 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 461-583
Cow position: chrX:41238202-41238322 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 461-587
Cow position: chrX:15006995-15007121 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 7, 31

Conread position: 463-580
Cow position: chrX:31312182-31312064 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 5, 0

Conread position: 463-583
Cow position: chrX:23092026-23091902 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 5, 0

Conread position: 463-583
Cow position: chrX:29562933-29563050 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 5, 57

Conread position: 467-584
Cow position: chrX:11762854-11762970 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 467-588
Cow position: chrX:5900610-5900493 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 84, 0

Conread position: 467-588
Cow position: chrX:38728882-38728761 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 469-583
Cow position: chrX:29553431-29553317 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 470-569
Cow position: chrX:30831188-30831287 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 82
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 470-584
Cow position: chrX:2551237-2551122 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 97
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 72, 0

Conread position: 470-584
Cow position: chrX:22914897-22915009 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 98
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 48, 0

Conread position: 471-583
Cow position: chrX:10076115-10076003 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 472-588
Cow position: chrX:33640118-33640002 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 473-583
Cow position: chrX:17966483-17966373 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 473-584
Cow position: chrX:17908009-17908119 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 473-588
Cow position: chrX:20743746-20743631 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 475-584
Cow position: chrX:15820734-15820626 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 475-588
Cow position: chrX:25788764-25788878 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 479-588
Cow position: chrX:917232-917341 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 479-588
Cow position: chrX:29121183-29121074 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 87
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 484-570
Cow position: chrX:28876641-28876555 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 75
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 484-583
Cow position: chrX:24054808-24054709 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 83
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 485-588
Cow position: chrX:19690345-19690242 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 87
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 487-588
Cow position: chrX:37665819-37665718 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.