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Cow genome map

           
Conread name:
           
reje34b_d9.y1
        

               
Conread position:
               
163-378
               

               
Cow position:
               
chr9:55889950-55889736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
41, 31
               

               
Conread position:
               
165-393
               

               
Cow position:
               
chr9:52598585-52598815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
39, 146
               

               
Conread position:
               
166-399
               

               
Cow position:
               
chr9:46664960-46664723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
25, 74
               

               
Conread position:
               
167-433
               

               
Cow position:
               
chr9:9443472-9443737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
67, 14
               

               
Conread position:
               
167-436
               

               
Cow position:
               
chr9:42037789-42037518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
69, 17
               

               
Conread position:
               
168-382
               

               
Cow position:
               
chr9:9311994-9311775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 30
               

               
Conread position:
               
168-433
               

               
Cow position:
               
chr9:35101018-35100757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 37
               

               
Conread position:
               
168-436
               

               
Cow position:
               
chr9:2888121-2887839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
14, 149
               

               
Conread position:
               
170-382
               

               
Cow position:
               
chr9:5245994-5245770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 23
               

               
Conread position:
               
172-382
               

               
Cow position:
               
chr9:8338160-8337944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
14, 23
               

               
Conread position:
               
172-412
               

               
Cow position:
               
chr9:8951037-8950784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
172-436
               

               
Cow position:
               
chr9:5756870-5757131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
9, 33
               

               
Conread position:
               
174-436
               

               
Cow position:
               
chr9:34204256-34203994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
64, 16
               

               
Conread position:
               
175-385
               

               
Cow position:
               
chr9:28747394-28747606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 137
               

               
Conread position:
               
175-436
               

               
Cow position:
               
chr9:19903207-19902938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
6, 35
               

               
Conread position:
               
176-382
               

               
Cow position:
               
chr9:8617927-8617736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
177-360
               

               
Cow position:
               
chr9:24997395-24997578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
58, 135
               

               
Conread position:
               
177-421
               

               
Cow position:
               
chr9:8288742-8288498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
57, 138
               

               
Conread position:
               
179-400
               

               
Cow position:
               
chr9:38645220-38645445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
59, 92
               

               
Conread position:
               
183-369
               

               
Cow position:
               
chr9:49417106-49416917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
21, 12
               

               
Conread position:
               
183-386
               

               
Cow position:
               
chr9:4646208-4646411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
13, 9
               

               
Conread position:
               
183-393
               

               
Cow position:
               
chr9:30477661-30477867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
55, 32
               

               
Conread position:
               
183-423
               

               
Cow position:
               
chr9:21462746-21462986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
31, 122
               

               
Conread position:
               
184-346
               

               
Cow position:
               
chr9:35904628-35904792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
53, 80
               

               
Conread position:
               
184-369
               

               
Cow position:
               
chr9:41513743-41513562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
20, 82
               

               
Conread position:
               
184-382
               

               
Cow position:
               
chr9:3774278-3774082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
51, 122
               

               
Conread position:
               
184-382
               

               
Cow position:
               
chr9:11313394-11313597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
57, 126
               

               
Conread position:
               
184-382
               

               
Cow position:
               
chr9:17518371-17518572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
20, 38
               

               
Conread position:
               
184-382
               

               
Cow position:
               
chr9:29339205-29339396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
54, 118
               

               
Conread position:
               
184-382
               

               
Cow position:
               
chr9:32669830-32670030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
54, 123
               

               
Conread position:
               
184-382
               

               
Cow position:
               
chr9:35105670-35105873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
26, 131
               

               
Conread position:
               
184-382
               

               
Cow position:
               
chr9:41283131-41282932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
52, 127
               

               
Conread position:
               
184-384
               

               
Cow position:
               
chr9:52839769-52839963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
184-390
               

               
Cow position:
               
chr9:5836274-5836054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
184-390
               

               
Cow position:
               
chr9:29684265-29684056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
51, 99
               

               
Conread position:
               
184-393
               

               
Cow position:
               
chr9:6189252-6189459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
22, 60
               

               
Conread position:
               
184-393
               

               
Cow position:
               
chr9:34697188-34697393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
184-420
               

               
Cow position:
               
chr9:1867567-1867328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
55, 87
               

               
Conread position:
               
184-428
               

               
Cow position:
               
chr9:388899-389144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
82, 36
               

               
Conread position:
               
184-432
               

               
Cow position:
               
chr9:42264324-42264071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
133, 53
               

               
Conread position:
               
184-433
               

               
Cow position:
               
chr9:32817020-32817272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 11
               

               
Conread position:
               
184-436
               

               
Cow position:
               
chr9:3932081-3931826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
19, 137
               

               
Conread position:
               
184-436
               

               
Cow position:
               
chr9:4630222-4629955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
47, 125
               

               
Conread position:
               
184-436
               

               
Cow position:
               
chr9:5399257-5399000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 133
               

               
Conread position:
               
184-436
               

               
Cow position:
               
chr9:43912046-43911798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
50, 31
               

               
Conread position:
               
185-327
               

               
Cow position:
               
chr9:6225335-6225482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
19, 131
               

               
Conread position:
               
185-329
               

               
Cow position:
               
chr9:38344009-38343860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 127
               

               
Conread position:
               
185-331
               

               
Cow position:
               
chr9:43013842-43013690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
19, 35
               

               
Conread position:
               
185-336
               

               
Cow position:
               
chr9:35850018-35849866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
50, 19
               

               
Conread position:
               
185-352
               

               
Cow position:
               
chr9:22114516-22114688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
19, 88
               

               
Conread position:
               
185-355
               

               
Cow position:
               
chr9:20989339-20989514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
25, 37
               

               
Conread position:
               
185-357
               

               
Cow position:
               
chr9:17928878-17928699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
19, 132
               

               
Conread position:
               
185-362
               

               
Cow position:
               
chr9:8534572-8534753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
55, 129
               

               
Conread position:
               
185-364
               

               
Cow position:
               
chr9:49709956-49709782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 19
               

               
Conread position:
               
185-369
               

               
Cow position:
               
chr9:3220255-3220066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
18, 130
               

               
Conread position:
               
185-369
               

               
Cow position:
               
chr9:5509840-5509655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
52, 127
               

               
Conread position:
               
185-369
               

               
Cow position:
               
chr9:36843905-36843723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 51
               

               
Conread position:
               
185-374
               

               
Cow position:
               
chr9:19493344-19493541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
19, 133
               

               
Conread position:
               
185-374
               

               
Cow position:
               
chr9:40005594-40005399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 133
               

               
Conread position:
               
185-375
               

               
Cow position:
               
chr9:1950038-1949842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 132
               

               
Conread position:
               
185-375
               

               
Cow position:
               
chr9:59386655-59386845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
51, 28
               

               
Conread position:
               
185-376
               

               
Cow position:
               
chr9:3070302-3070486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 48
               

               
Conread position:
               
185-376
               

               
Cow position:
               
chr9:7363141-7362951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
52, 123
               

               
Conread position:
               
185-377
               

               
Cow position:
               
chr9:13743814-13744008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 63
               

               
Conread position:
               
185-377
               

               
Cow position:
               
chr9:55118198-55118009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
19, 104
               

               
Conread position:
               
185-378
               

               
Cow position:
               
chr9:47906162-47906358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
52, 19
               

               
Conread position:
               
185-381
               

               
Cow position:
               
chr9:20416392-20416588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
185-381
               

               
Cow position:
               
chr9:38846225-38846415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
19, 53
               

               
Conread position:
               
185-381
               

               
Cow position:
               
chr9:58204779-58204591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
185-382
               

               
Cow position:
               
chr9:1520619-1520822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
21, 189
               

               
Conread position:
               
185-382
               

               
Cow position:
               
chr9:6192343-6192542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
185-382
               

               
Cow position:
               
chr9:8998475-8998266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 137
               

               
Conread position:
               
185-382
               

               
Cow position:
               
chr9:9199661-9199862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
15, 137
               

               
Conread position:
               
185-382
               

               
Cow position:
               
chr9:9461537-9461737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
17, 97
               

               
Conread position:
               
185-382
               

               
Cow position:
               
chr9:11303963-11304158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
56, 117
               

               
Conread position:
               
185-382
               

               
Cow position:
               
chr9:17310444-17310644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
19, 126
               

               
Conread position:
               
185-382
               

               
Cow position:
               
chr9:18216985-18217182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
54, 16
               

               
Conread position:
               
185-382
               

               
Cow position:
               
chr9:19714193-19713997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
19, 54
               

               
Conread position:
               
185-382
               

               
Cow position:
               
chr9:24887318-24887123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
18, 69
               

               
Conread position:
               
185-382
               

               
Cow position:
               
chr9:26477334-26477132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
15, 133
               

               
Conread position:
               
185-382
               

               
Cow position:
               
chr9:27279427-27279226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 128
               

               
Conread position:
               
185-382
               

               
Cow position:
               
chr9:28354637-28354434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
53, 131
               

               
Conread position:
               
185-382
               

               
Cow position:
               
chr9:29185014-29185220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 134
               

               
Conread position:
               
185-382
               

               
Cow position:
               
chr9:32307118-32307314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
18, 103
               

               
Conread position:
               
185-382
               

               
Cow position:
               
chr9:34410277-34410479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
24, 129
               

               
Conread position:
               
185-382
               

               
Cow position:
               
chr9:35028050-35028248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
64, 84
               

               
Conread position:
               
185-382
               

               
Cow position:
               
chr9:39681458-39681256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 125
               

               
Conread position:
               
185-382
               

               
Cow position:
               
chr9:43871097-43870892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
18, 132
               

               
Conread position:
               
185-382
               

               
Cow position:
               
chr9:64155741-64155934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 38
               

               
Conread position:
               
185-384
               

               
Cow position:
               
chr9:11168848-11168645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
19, 133
               

               
Conread position:
               
185-384
               

               
Cow position:
               
chr9:30402302-30402510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
18, 76
               

               
Conread position:
               
185-385
               

               
Cow position:
               
chr9:6840120-6839907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
17, 138
               

               
Conread position:
               
185-385
               

               
Cow position:
               
chr9:14796659-14796857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 46
               

               
Conread position:
               
185-385
               

               
Cow position:
               
chr9:22443509-22443713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
19, 129
               

               
Conread position:
               
185-385
               

               
Cow position:
               
chr9:25921946-25921737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 134
               

               
Conread position:
               
185-385
               

               
Cow position:
               
chr9:33218833-33219036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
52, 92
               

               
Conread position:
               
185-385
               

               
Cow position:
               
chr9:34901990-34902187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 92
               

               
Conread position:
               
185-385
               

               
Cow position:
               
chr9:35167290-35167089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
185-385
               

               
Cow position:
               
chr9:40215360-40215159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
21, 123
               

               
Conread position:
               
185-385
               

               
Cow position:
               
chr9:42445861-42446069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
19, 133
               

               
Conread position:
               
185-385
               

               
Cow position:
               
chr9:51566376-51566582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
185-386
               

               
Cow position:
               
chr9:6933955-6934161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 135
               

               
Conread position:
               
185-386
               

               
Cow position:
               
chr9:11123364-11123570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 127
               

               
Conread position:
               
185-386
               

               
Cow position:
               
chr9:33697147-33696949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 9
               

               
Conread position:
               
185-386
               

               
Cow position:
               
chr9:55075015-55075216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
19, 118
               

               
Conread position:
               
185-389
               

               
Cow position:
               
chr9:3343861-3343659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
55, 31
               

               
Conread position:
               
185-393
               

               
Cow position:
               
chr9:4262974-4263184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 84
               

               
Conread position:
               
185-393
               

               
Cow position:
               
chr9:28391917-28392120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
8, 49
               

               
Conread position:
               
185-393
               

               
Cow position:
               
chr9:33940723-33940512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
16, 132
               

               
Conread position:
               
185-393
               

               
Cow position:
               
chr9:44467234-44467434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
185-393
               

               
Cow position:
               
chr9:50080928-50081134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
19, 62
               

               
Conread position:
               
185-393
               

               
Cow position:
               
chr9:54528630-54528420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
21, 119
               

               
Conread position:
               
185-393
               

               
Cow position:
               
chr9:63153701-63153907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
68, 56
               

               
Conread position:
               
185-397
               

               
Cow position:
               
chr9:34284066-34283857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
53, 30
               

               
Conread position:
               
185-399
               

               
Cow position:
               
chr9:22433820-22434028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 56
               

               
Conread position:
               
185-399
               

               
Cow position:
               
chr9:37069451-37069660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
19, 45
               

               
Conread position:
               
185-402
               

               
Cow position:
               
chr9:4858657-4858435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
25, 83
               

               
Conread position:
               
185-405
               

               
Cow position:
               
chr9:10010920-10010708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
19, 52
               

               
Conread position:
               
185-405
               

               
Cow position:
               
chr9:33114465-33114243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 115
               

               
Conread position:
               
185-405
               

               
Cow position:
               
chr9:50977129-50977360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
25, 229
               

               
Conread position:
               
185-405
               

               
Cow position:
               
chr9:55084179-55084410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
19, 113
               

               
Conread position:
               
185-409
               

               
Cow position:
               
chr9:50543304-50543538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 132
               

               
Conread position:
               
185-410
               

               
Cow position:
               
chr9:3353469-3353251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
21, 40
               

               
Conread position:
               
185-410
               

               
Cow position:
               
chr9:10308890-10309102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 55
               

               
Conread position:
               
185-411
               

               
Cow position:
               
chr9:52513334-52513560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
19, 67
               

               
Conread position:
               
185-412
               

               
Cow position:
               
chr9:44396777-44396550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
25, 99
               

               
Conread position:
               
185-417
               

               
Cow position:
               
chr9:1877889-1878121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
20, 79
               

               
Conread position:
               
185-418
               

               
Cow position:
               
chr9:4861506-4861261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
26, 133
               

               
Conread position:
               
185-424
               

               
Cow position:
               
chr9:23042895-23042654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
19, 83
               

               
Conread position:
               
185-432
               

               
Cow position:
               
chr9:22318469-22318211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
21, 130
               

               
Conread position:
               
185-432
               

               
Cow position:
               
chr9:55562617-55562365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
22, 61
               

               
Conread position:
               
185-433
               

               
Cow position:
               
chr9:32732570-32732815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
17, 66
               

               
Conread position:
               
185-433
               

               
Cow position:
               
chr9:41789403-41789151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
21, 130
               

               
Conread position:
               
185-436
               

               
Cow position:
               
chr9:5209699-5209448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
19, 130
               

               
Conread position:
               
185-436
               

               
Cow position:
               
chr9:5433756-5433491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
19, 135
               

               
Conread position:
               
185-436
               

               
Cow position:
               
chr9:5500976-5500710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
19, 129
               

               
Conread position:
               
185-436
               

               
Cow position:
               
chr9:6851950-6852205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
22, 122
               

               
Conread position:
               
185-436
               

               
Cow position:
               
chr9:8599718-8599471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
48, 29
               

               
Conread position:
               
185-436
               

               
Cow position:
               
chr9:8657313-8657566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 129
               

               
Conread position:
               
185-436
               

               
Cow position:
               
chr9:9823387-9823636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
19, 88
               

               
Conread position:
               
185-436
               

               
Cow position:
               
chr9:25546757-25546503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
24, 123
               

               
Conread position:
               
185-436
               

               
Cow position:
               
chr9:28947973-28947732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
19, 27
               

               
Conread position:
               
185-436
               

               
Cow position:
               
chr9:28983303-28983047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
19, 88
               

               
Conread position:
               
185-436
               

               
Cow position:
               
chr9:33668848-33668590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
19, 130
               

               
Conread position:
               
185-436
               

               
Cow position:
               
chr9:34468465-34468713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 30
               

               
Conread position:
               
185-436
               

               
Cow position:
               
chr9:41679864-41679608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
19, 128
               

               
Conread position:
               
185-436
               

               
Cow position:
               
chr9:47869125-47868870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
51, 35
               

               
Conread position:
               
185-436
               

               
Cow position:
               
chr9:51720784-51721041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
21, 70
               

               
Conread position:
               
185-436
               

               
Cow position:
               
chr9:58979516-58979251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
15, 120
               

               
Conread position:
               
185-436
               

               
Cow position:
               
chr9:63784809-63785063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
195, 29
               

               
Conread position:
               
186-333
               

               
Cow position:
               
chr9:17799747-17799591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
24, 132
               

               
Conread position:
               
186-369
               

               
Cow position:
               
chr9:29006680-29006487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 134
               

               
Conread position:
               
186-375
               

               
Cow position:
               
chr9:43937058-43936868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
5, 61
               

               
Conread position:
               
186-375
               

               
Cow position:
               
chr9:49293028-49293219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
18, 124
               

               
Conread position:
               
186-375
               

               
Cow position:
               
chr9:55532930-55532738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
50, 29
               

               
Conread position:
               
186-382
               

               
Cow position:
               
chr9:9552210-9552008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
18, 87
               

               
Conread position:
               
186-382
               

               
Cow position:
               
chr9:9595837-9596035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 58
               

               
Conread position:
               
186-382
               

               
Cow position:
               
chr9:17411074-17411276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
22, 130
               

               
Conread position:
               
186-382
               

               
Cow position:
               
chr9:17871989-17872193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 132
               

               
Conread position:
               
186-382
               

               
Cow position:
               
chr9:31078965-31079162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
16, 128
               

               
Conread position:
               
186-385
               

               
Cow position:
               
chr9:48628146-48627941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
51, 129
               

               
Conread position:
               
186-385
               

               
Cow position:
               
chr9:56453446-56453253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 31
               

               
Conread position:
               
186-386
               

               
Cow position:
               
chr9:13169544-13169751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
23, 130
               

               
Conread position:
               
186-390
               

               
Cow position:
               
chr9:10819714-10819919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
5, 96
               

               
Conread position:
               
186-390
               

               
Cow position:
               
chr9:28726602-28726821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
5, 133
               

               
Conread position:
               
186-393
               

               
Cow position:
               
chr9:5327373-5327164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
18, 38
               

               
Conread position:
               
186-393
               

               
Cow position:
               
chr9:26279054-26279263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
18, 77
               

               
Conread position:
               
186-393
               

               
Cow position:
               
chr9:27345487-27345677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
186-393
               

               
Cow position:
               
chr9:34374818-34375018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
186-393
               

               
Cow position:
               
chr9:64559766-64559976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
5, 119
               

               
Conread position:
               
186-395
               

               
Cow position:
               
chr9:62656915-62656705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
67, 18
               

               
Conread position:
               
186-405
               

               
Cow position:
               
chr9:34286920-34286694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
23, 131
               

               
Conread position:
               
186-411
               

               
Cow position:
               
chr9:33598099-33597873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
5, 54
               

               
Conread position:
               
186-412
               

               
Cow position:
               
chr9:50139402-50139173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
55, 128
               

               
Conread position:
               
186-436
               

               
Cow position:
               
chr9:8723911-8723641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
53, 8
               

               
Conread position:
               
186-436
               

               
Cow position:
               
chr9:55321757-55321500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
51, 131
               

               
Conread position:
               
187-382
               

               
Cow position:
               
chr9:11319517-11319717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 35
               

               
Conread position:
               
187-382
               

               
Cow position:
               
chr9:22408862-22408674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
21, 51
               

               
Conread position:
               
187-384
               

               
Cow position:
               
chr9:38941315-38941516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
17, 128
               

               
Conread position:
               
187-393
               

               
Cow position:
               
chr9:5594616-5594408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
53, 124
               

               
Conread position:
               
187-393
               

               
Cow position:
               
chr9:62668368-62668156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
50, 131
               

               
Conread position:
               
187-405
               

               
Cow position:
               
chr9:15805806-15806030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 128
               

               
Conread position:
               
187-418
               

               
Cow position:
               
chr9:29808573-29808335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 130
               

               
Conread position:
               
187-436
               

               
Cow position:
               
chr9:32115489-32115734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 57
               

               
Conread position:
               
188-382
               

               
Cow position:
               
chr9:23788551-23788356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
51, 101
               

               
Conread position:
               
188-423
               

               
Cow position:
               
chr9:64050447-64050683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 34
               

               
Conread position:
               
190-378
               

               
Cow position:
               
chr9:23955870-23956059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
14, 121
               

               
Conread position:
               
190-382
               

               
Cow position:
               
chr9:22461627-22461815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 111
               

               
Conread position:
               
190-385
               

               
Cow position:
               
chr9:42478369-42478569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
29, 124
               

               
Conread position:
               
190-385
               

               
Cow position:
               
chr9:64064247-64064450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
44, 14
               

               
Conread position:
               
191-374
               

               
Cow position:
               
chr9:56032208-56032390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
191-392
               

               
Cow position:
               
chr9:54677356-54677171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
191-393
               

               
Cow position:
               
chr9:39011358-39011563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
19, 122
               

               
Conread position:
               
192-374
               

               
Cow position:
               
chr9:24872945-24872761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
46, 117
               

               
Conread position:
               
193-385
               

               
Cow position:
               
chr9:54681617-54681424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
194-385
               

               
Cow position:
               
chr9:50310664-50310846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
194-423
               

               
Cow position:
               
chr9:28379079-28378848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
10, 77
               

               
Conread position:
               
194-436
               

               
Cow position:
               
chr9:55287782-55288043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
16, 77
               

               
Conread position:
               
195-380
               

               
Cow position:
               
chr9:32981963-32982156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 123
               

               
Conread position:
               
195-415
               

               
Cow position:
               
chr9:4580301-4580524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
9, 43
               

               
Conread position:
               
196-385
               

               
Cow position:
               
chr9:16300455-16300655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
27, 125
               

               
Conread position:
               
196-385
               

               
Cow position:
               
chr9:45756474-45756277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
8, 121
               

               
Conread position:
               
196-386
               

               
Cow position:
               
chr9:38624519-38624711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
40, 116
               

               
Conread position:
               
196-391
               

               
Cow position:
               
chr9:9753288-9753482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
43, 113
               

               
Conread position:
               
196-392
               

               
Cow position:
               
chr9:12225872-12226071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
41, 116
               

               
Conread position:
               
197-436
               

               
Cow position:
               
chr9:21383848-21384096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
50, 96
               

               
Conread position:
               
198-382
               

               
Cow position:
               
chr9:45171115-45171306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
39, 119
               

               
Conread position:
               
198-386
               

               
Cow position:
               
chr9:41394545-41394734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
44, 113
               

               
Conread position:
               
198-386
               

               
Cow position:
               
chr9:54716503-54716689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
41, 105
               

               
Conread position:
               
198-387
               

               
Cow position:
               
chr9:15225195-15225383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
45, 116
               

               
Conread position:
               
199-363
               

               
Cow position:
               
chr9:26310611-26310442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
39, 113
               

               
Conread position:
               
201-375
               

               
Cow position:
               
chr9:4267883-4268058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
32, 21
               

               
Conread position:
               
201-382
               

               
Cow position:
               
chr9:1973042-1972865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 87
               

               
Conread position:
               
201-382
               

               
Cow position:
               
chr9:5763531-5763713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 100
               

               
Conread position:
               
201-385
               

               
Cow position:
               
chr9:19758809-19758634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
201-387
               

               
Cow position:
               
chr9:5219068-5219260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
34, 117
               

               
Conread position:
               
201-405
               

               
Cow position:
               
chr9:31347056-31346845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
36, 105
               

               
Conread position:
               
201-436
               

               
Cow position:
               
chr9:6879873-6879647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 82
               

               
Conread position:
               
201-436
               

               
Cow position:
               
chr9:20091148-20090906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
40, 113
               

               
Conread position:
               
202-324
               

               
Cow position:
               
chr9:35592113-35591986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
34, 112
               

               
Conread position:
               
202-357
               

               
Cow position:
               
chr9:32676777-32676619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 111
               

               
Conread position:
               
202-369
               

               
Cow position:
               
chr9:51557393-51557556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
202-382
               

               
Cow position:
               
chr9:23295228-23295409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
34, 23
               

               
Conread position:
               
202-384
               

               
Cow position:
               
chr9:56011598-56011414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 64
               

               
Conread position:
               
202-393
               

               
Cow position:
               
chr9:15215586-15215781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
31, 107
               

               
Conread position:
               
203-368
               

               
Cow position:
               
chr9:40776896-40776729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
35, 66
               

               
Conread position:
               
203-382
               

               
Cow position:
               
chr9:41781752-41781571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 16
               

               
Conread position:
               
204-369
               

               
Cow position:
               
chr9:13761200-13761029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
36, 112
               

               
Conread position:
               
204-375
               

               
Cow position:
               
chr9:50202667-50202497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
40, 15
               

               
Conread position:
               
204-382
               

               
Cow position:
               
chr9:43443899-43443721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
33, 104
               

               
Conread position:
               
204-433
               

               
Cow position:
               
chr9:25400099-25400338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
35, 83
               

               
Conread position:
               
206-435
               

               
Cow position:
               
chr9:44584685-44584448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
181, 103
               

               
Conread position:
               
207-385
               

               
Cow position:
               
chr9:37199218-37199041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
34, 53
               

               
Conread position:
               
207-408
               

               
Cow position:
               
chr9:43342424-43342221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
33, 16
               

               
Conread position:
               
207-436
               

               
Cow position:
               
chr9:23797331-23797094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
208-382
               

               
Cow position:
               
chr9:5342158-5342330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
208-383
               

               
Cow position:
               
chr9:5469956-5469786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
133, 101
               

               
Conread position:
               
208-386
               

               
Cow position:
               
chr9:35832522-35832704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 108
               

               
Conread position:
               
208-401
               

               
Cow position:
               
chr9:23632566-23632752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 61
               

               
Conread position:
               
209-400
               

               
Cow position:
               
chr9:8834037-8834228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
43, 27
               

               
Conread position:
               
209-436
               

               
Cow position:
               
chr9:26403877-26403641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
23, 98
               

               
Conread position:
               
212-436
               

               
Cow position:
               
chr9:29819805-29819572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
34, 25
               

               
Conread position:
               
216-382
               

               
Cow position:
               
chr9:56065641-56065481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
20, 89
               

               
Conread position:
               
218-436
               

               
Cow position:
               
chr9:7805879-7806108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
18, 93
               

               
Conread position:
               
225-382
               

               
Cow position:
               
chr9:8992106-8992263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
132, 83
               

               
Conread position:
               
229-412
               

               
Cow position:
               
chr9:32991340-32991164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
9, 37
               

               
Conread position:
               
229-436
               

               
Cow position:
               
chr9:12499078-12498875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
230-385
               

               
Cow position:
               
chr9:42062168-42062014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
230-432
               

               
Cow position:
               
chr9:38289260-38289444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
230-436
               

               
Cow position:
               
chr9:24429028-24429231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
176, 79
               

               
Conread position:
               
230-436
               

               
Cow position:
               
chr9:27347863-27347664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
156, 14
               

               
Conread position:
               
231-378
               

               
Cow position:
               
chr9:26859414-26859276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
231-385
               

               
Cow position:
               
chr9:47214478-47214631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
232-393
               

               
Cow position:
               
chr9:8562890-8562728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
12, 76
               

               
Conread position:
               
232-436
               

               
Cow position:
               
chr9:4538794-4538994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
233-382
               

               
Cow position:
               
chr9:23970832-23970980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
90, 9
               

               
Conread position:
               
233-382
               

               
Cow position:
               
chr9:39758583-39758435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
233-390
               

               
Cow position:
               
chr9:24652469-24652313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
236-382
               

               
Cow position:
               
chr9:31814322-31814469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
237-398
               

               
Cow position:
               
chr9:52258004-52258161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 69
               

               
Conread position:
               
237-433
               

               
Cow position:
               
chr9:34973651-34973851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
150, 71
               

               
Conread position:
               
238-382
               

               
Cow position:
               
chr9:41964675-41964817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
238-382
               

               
Cow position:
               
chr9:58368937-58369079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
239-385
               

               
Cow position:
               
chr9:31098825-31098972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
239-386
               

               
Cow position:
               
chr9:32955626-32955772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
143, 70
               

               
Conread position:
               
239-393
               

               
Cow position:
               
chr9:34888238-34888388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
10, 31
               

               
Conread position:
               
239-436
               

               
Cow position:
               
chr9:33347431-33347635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
140, 70
               

               
Conread position:
               
240-393
               

               
Cow position:
               
chr9:56827539-56827382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
52, 74
               

               
Conread position:
               
240-436
               

               
Cow position:
               
chr9:26645984-26645785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
5, 20
               

               
Conread position:
               
242-384
               

               
Cow position:
               
chr9:5072782-5072918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
243-436
               

               
Cow position:
               
chr9:18439118-18439309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
148, 7
               

               
Conread position:
               
247-390
               

               
Cow position:
               
chr9:34014198-34014342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
136, 61
               

               
Conread position:
               
249-373
               

               
Cow position:
               
chr9:48157127-48157005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
249-436
               

               
Cow position:
               
chr9:26559563-26559749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
159, 60
               

               
Conread position:
               
250-382
               

               
Cow position:
               
chr9:34484643-34484512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
250-382
               

               
Cow position:
               
chr9:54051822-54051694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
250-402
               

               
Cow position:
               
chr9:13742571-13742418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
140, 59
               

               
Conread position:
               
252-382
               

               
Cow position:
               
chr9:24243675-24243806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
83, 57
               

               
Conread position:
               
253-436
               

               
Cow position:
               
chr9:60355167-60355354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
117, 56
               

               
Conread position:
               
258-427
               

               
Cow position:
               
chr9:38580895-38580730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
19, 52
               

               
Conread position:
               
258-436
               

               
Cow position:
               
chr9:3924483-3924302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
87, 51
               

               
Conread position:
               
259-412
               

               
Cow position:
               
chr9:2863482-2863333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
260-435
               

               
Cow position:
               
chr9:5829102-5828932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
261-377
               

               
Cow position:
               
chr9:52807368-52807482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
265-398
               

               
Cow position:
               
chr9:35793710-35793578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
268-391
               

               
Cow position:
               
chr9:11427693-11427567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
18, 45
               

               
Conread position:
               
268-393
               

               
Cow position:
               
chr9:34707282-34707405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
273-431
               

               
Cow position:
               
chr9:60549386-60549543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
274-436
               

               
Cow position:
               
chr9:61847107-61847269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
106, 25
               

               
Conread position:
               
276-418
               

               
Cow position:
               
chr9:4304309-4304165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
103, 33
               

               
Conread position:
               
276-425
               

               
Cow position:
               
chr9:38777043-38777190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
282-436
               

               
Cow position:
               
chr9:34917168-34917331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
7, 28
               

               
Conread position:
               
286-436
               

               
Cow position:
               
chr9:4256975-4257131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
102, 23
               

               
Conread position:
               
287-436
               

               
Cow position:
               
chr9:41646191-41646341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
92, 22
               

               
Conread position:
               
289-436
               

               
Cow position:
               
chr9:34431829-34431685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
292-405
               

               
Cow position:
               
chr9:11161335-11161225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
292-436
               

               
Cow position:
               
chr9:48634894-48635038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
99, 16
               

               
Conread position:
               
324-412
               

               
Cow position:
               
chr9:20211554-20211641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
89
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               
Show alignments to all cow chromosomes.