Cow genome map

Conread name: reru03c_c10.y1

Conread position: 1-269
Cow position: chr12:8841276-8841003 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 194
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 148, 0

Conread position: 1-284
Cow position: chr12:4593607-4593897 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 0

Conread position: 1-286
Cow position: chr12:9142906-9143195 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 105

Conread position: 1-288
Cow position: chr12:24206403-24206690 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 141

Conread position: 1-288
Cow position: chr12:38678204-38678506 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 0

Conread position: 1-291
Cow position: chr12:38111242-38111538 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 0

Conread position: 1-292
Cow position: chr12:27176142-27175861 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 218
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 8, 80

Conread position: 1-292
Cow position: chr12:27192867-27193148 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 219
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 8, 80

Conread position: 1-294
Cow position: chr12:17079774-17080070 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 13

Conread position: 1-294
Cow position: chr12:21620167-21619870 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 69

Conread position: 1-294
Cow position: chr12:31261376-31261686 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 226
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 148, 0

Conread position: 1-300
Cow position: chr12:23445946-23446244 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 47

Conread position: 1-310
Cow position: chr12:15173332-15173644 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 11

Conread position: 1-312
Cow position: chr12:3211828-3212163 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 244
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 59, 88

Conread position: 1-325
Cow position: chr12:19420428-19420085 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 134

Conread position: 1-330
Cow position: chr12:36118484-36118831 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 80

Conread position: 1-332
Cow position: chr12:19155093-19154759 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 19

Conread position: 1-335
Cow position: chr12:45630291-45629955 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 59

Conread position: 1-337
Cow position: chr12:3372218-3372559 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 85

Conread position: 1-337
Cow position: chr12:8487826-8487465 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 45

Conread position: 1-340
Cow position: chr12:35311162-35310807 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 326

Conread position: 1-350
Cow position: chr12:19125310-19124948 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 153

Conread position: 1-350
Cow position: chr12:20316994-20316631 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 0

Conread position: 1-384
Cow position: chr12:9482766-9482384 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 91

Conread position: 1-384
Cow position: chr12:24755512-24755115 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 243

Conread position: 1-385
Cow position: chr12:47486040-47486440 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 268
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 51, 304

Conread position: 1-390
Cow position: chr12:26869279-26868869 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 51

Conread position: 1-391
Cow position: chr12:18123202-18123606 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 17

Conread position: 1-392
Cow position: chr12:2242377-2241963 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 392

Conread position: 1-392
Cow position: chr12:2286092-2286513 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 401

Conread position: 1-392
Cow position: chr12:5800544-5800960 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 81

Conread position: 1-392
Cow position: chr12:11835753-11836158 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 185

Conread position: 1-392
Cow position: chr12:19696918-19697329 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 166

Conread position: 1-392
Cow position: chr12:19865754-19866169 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 399

Conread position: 1-392
Cow position: chr12:20655150-20654768 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 284
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 59, 199

Conread position: 1-392
Cow position: chr12:28572215-28572614 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 273

Conread position: 1-392
Cow position: chr12:40806908-40807323 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 104

Conread position: 1-392
Cow position: chr12:44766593-44767001 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 171

Conread position: 1-398
Cow position: chr12:47928728-47929145 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 163

Conread position: 1-400
Cow position: chr12:10490822-10491205 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 182

Conread position: 1-409
Cow position: chr12:46332890-46333293 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 137

Conread position: 1-410
Cow position: chr12:7001098-7000658 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 309

Conread position: 1-413
Cow position: chr12:35368142-35368590 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 111

Conread position: 1-414
Cow position: chr12:18944141-18943709 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 110

Conread position: 1-414
Cow position: chr12:31430054-31429619 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 199

Conread position: 1-414
Cow position: chr12:36013113-36012664 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 186

Conread position: 1-514
Cow position: chr12:9414255-9413712 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 230

Conread position: 2-280
Cow position: chr12:19198803-19199084 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 10

Conread position: 2-316
Cow position: chr12:19868979-19869310 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 170

Conread position: 2-325
Cow position: chr12:18936912-18937242 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 28

Conread position: 2-332
Cow position: chr12:26777638-26777298 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 10

Conread position: 2-332
Cow position: chr12:34673810-34673484 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 28

Conread position: 2-332
Cow position: chr12:45160995-45160648 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 80

Conread position: 2-334
Cow position: chr12:21045542-21045212 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 204

Conread position: 2-335
Cow position: chr12:19691725-19691375 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 180

Conread position: 2-341
Cow position: chr12:35755129-35754787 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 181

Conread position: 2-351
Cow position: chr12:37770384-37770758 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 0

Conread position: 2-392
Cow position: chr12:3039028-3039433 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 163

Conread position: 2-398
Cow position: chr12:11582919-11583328 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 188

Conread position: 2-413
Cow position: chr12:27563870-27563429 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 226

Conread position: 3-266
Cow position: chr12:25821201-25820936 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 164

Conread position: 3-292
Cow position: chr12:31605407-31605119 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 220
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 221, 80

Conread position: 3-332
Cow position: chr12:32786473-32786144 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 95

Conread position: 3-332
Cow position: chr12:37514715-37514382 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 60

Conread position: 3-334
Cow position: chr12:17031121-17031473 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 11

Conread position: 3-351
Cow position: chr12:6469528-6469167 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 257
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 149, 64

Conread position: 3-391
Cow position: chr12:33403493-33403102 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 270
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 72, 148

Conread position: 3-392
Cow position: chr12:10461514-10461927 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 243

Conread position: 3-392
Cow position: chr12:15938736-15938339 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 109

Conread position: 3-392
Cow position: chr12:17472701-17472299 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 89

Conread position: 3-392
Cow position: chr12:17982149-17982546 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 14

Conread position: 3-398
Cow position: chr12:18421411-18420993 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 10

Conread position: 4-332
Cow position: chr12:19040102-19039754 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 0

Conread position: 5-358
Cow position: chr12:2711006-2711381 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 11

Conread position: 5-392
Cow position: chr12:40910763-40910364 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 80

Conread position: 6-343
Cow position: chr12:35718542-35718195 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 243
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 54, 137

Conread position: 7-389
Cow position: chr12:48437394-48436988 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 281
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 54, 44

Conread position: 7-398
Cow position: chr12:7977571-7977968 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 140

Conread position: 8-319
Cow position: chr12:15259196-15258860 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 247
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 53, 155

Conread position: 8-351
Cow position: chr12:22868670-22869027 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 240
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 58, 275

Conread position: 8-393
Cow position: chr12:36501427-36501018 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 73

Conread position: 8-398
Cow position: chr12:42602717-42602309 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 207

Conread position: 9-288
Cow position: chr12:16359398-16359678 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 48

Conread position: 12-332
Cow position: chr12:31228101-31228430 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 248
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 48, 132

Conread position: 13-294
Cow position: chr12:3578807-3579094 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 200
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 73, 153

Conread position: 14-288
Cow position: chr12:17007723-17008005 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 207
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 48, 154

Conread position: 14-355
Cow position: chr12:44274318-44273974 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 36

Conread position: 14-405
Cow position: chr12:19871965-19872363 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 163

Conread position: 16-389
Cow position: chr12:16544059-16543652 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 283
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 58, 124

Conread position: 18-414
Cow position: chr12:17716602-17717019 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 267

Conread position: 19-414
Cow position: chr12:42966530-42966949 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 313

Conread position: 20-292
Cow position: chr12:3160599-3160875 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 142

Conread position: 21-392
Cow position: chr12:44014302-44013909 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 99

Conread position: 24-340
Cow position: chr12:6210630-6210290 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 63

Conread position: 24-388
Cow position: chr12:30918965-30919341 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 196

Conread position: 25-392
Cow position: chr12:27803514-27803126 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 278
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 35, 159

Conread position: 31-292
Cow position: chr12:15415537-15415278 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 192
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 118, 158

Conread position: 34-303
Cow position: chr12:47800273-47799999 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 194
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 26, 163

Conread position: 34-341
Cow position: chr12:15089036-15089347 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 244

Conread position: 37-293
Cow position: chr12:17098964-17099235 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 195
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 33, 0

Conread position: 40-262
Cow position: chr12:15160309-15160535 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 44-340
Cow position: chr12:7108734-7109058 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 237
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 75, 0

Conread position: 47-288
Cow position: chr12:38774800-38775053 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 183
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 102, 235

Conread position: 48-319
Cow position: chr12:22132410-22132134 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 210
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 101, 33

Conread position: 48-350
Cow position: chr12:29484326-29484010 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 21

Conread position: 48-392
Cow position: chr12:6489413-6489064 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 22

Conread position: 48-414
Cow position: chr12:29969138-29969528 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 353

Conread position: 49-269
Cow position: chr12:1245854-1246079 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 165
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 38, 21

Conread position: 49-440
Cow position: chr12:35218841-35218431 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 79

Conread position: 50-278
Cow position: chr12:6719885-6720113 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 163
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 134, 104

Conread position: 50-358
Cow position: chr12:22516174-22515864 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 228
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 99, 26

Conread position: 51-334
Cow position: chr12:4370793-4371088 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 207
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 17, 130

Conread position: 53-316
Cow position: chr12:30170226-30170509 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 213
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 96, 0

Conread position: 59-305
Cow position: chr12:26203439-26203689 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 177
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 91, 71

Conread position: 60-316
Cow position: chr12:3600322-3600055 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 204
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 89, 110

Conread position: 62-399
Cow position: chr12:40158661-40158304 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 7

Conread position: 63-273
Cow position: chr12:25312802-25312588 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 86, 7

Conread position: 63-391
Cow position: chr12:42181564-42181212 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 258
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 86, 107

Conread position: 63-414
Cow position: chr12:8869317-8868926 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 282
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 86, 41

Conread position: 64-414
Cow position: chr12:44596239-44595861 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 258
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 85, 144

Conread position: 65-359
Cow position: chr12:4656995-4656695 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 203
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 84, 125

Conread position: 70-391
Cow position: chr12:5632293-5631956 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 232
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 79, 244

Conread position: 72-310
Cow position: chr12:30605560-30605331 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 172
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 118, 73

Conread position: 72-334
Cow position: chr12:45802116-45801852 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 203
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 77, 159

Conread position: 73-266
Cow position: chr12:45679715-45679913 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 157
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 76, 0

Conread position: 73-316
Cow position: chr12:39486017-39486274 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 197
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 117, 66

Conread position: 77-332
Cow position: chr12:21314610-21314882 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 72, 0

Conread position: 77-358
Cow position: chr12:3880664-3880367 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 216
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 112, 24

Conread position: 77-415
Cow position: chr12:42254249-42254618 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 272
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 72, 101

Conread position: 78-350
Cow position: chr12:19508980-19508684 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 226
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 71, 105

Conread position: 78-392
Cow position: chr12:6240896-6241239 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 328

Conread position: 80-390
Cow position: chr12:30753317-30753648 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 243
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 69, 153

Conread position: 81-299
Cow position: chr12:13018197-13017978 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 169
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 68, 194

Conread position: 85-388
Cow position: chr12:45814668-45814335 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 247
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 64, 321

Conread position: 85-392
Cow position: chr12:7558287-7557985 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 212
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 66, 73

Conread position: 85-414
Cow position: chr12:20326371-20326721 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 263
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 68, 72

Conread position: 87-349
Cow position: chr12:30596064-30596329 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 185
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 65, 84

Conread position: 88-290
Cow position: chr12:36715524-36715317 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 61, 70

Conread position: 88-349
Cow position: chr12:10895949-10895669 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 207
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 61, 0

Conread position: 88-351
Cow position: chr12:15121941-15122198 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 200
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 64, 135

Conread position: 92-392
Cow position: chr12:7919669-7919969 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 230
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 42, 183

Conread position: 94-344
Cow position: chr12:22124625-22124878 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 190
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 55, 93

Conread position: 94-350
Cow position: chr12:36313471-36313739 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 200
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 55, 105

Conread position: 94-351
Cow position: chr12:28011294-28011017 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 209
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 58, 237

Conread position: 94-361
Cow position: chr12:41216667-41216962 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 223
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 55, 82

Conread position: 94-390
Cow position: chr12:30437856-30438166 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 179

Conread position: 94-414
Cow position: chr12:31959499-31959835 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 250
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 58, 47

Conread position: 98-288
Cow position: chr12:15429991-15429792 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 156
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 51, 0

Conread position: 99-379
Cow position: chr12:3568560-3568860 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 220
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 50, 77

Conread position: 100-303
Cow position: chr12:30946440-30946654 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 164
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 9, 0

Conread position: 102-286
Cow position: chr12:17000875-17001060 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 47, 86

Conread position: 105-282
Cow position: chr12:19514699-19514515 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 44, 60

Conread position: 105-348
Cow position: chr12:5863195-5863445 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 181
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 44, 50

Conread position: 114-351
Cow position: chr12:25560996-25561252 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 188
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 35, 0

Conread position: 114-393
Cow position: chr12:12304029-12304314 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 208
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 35, 62

Conread position: 115-391
Cow position: chr12:47803781-47804080 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 214
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 37, 228

Conread position: 118-332
Cow position: chr12:31060350-31060120 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 179
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 31, 17

Conread position: 121-392
Cow position: chr12:17881504-17881788 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 216
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 28, 123

Conread position: 122-332
Cow position: chr12:41580750-41580974 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 166
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 27, 103

Conread position: 123-288
Cow position: chr12:29119534-29119703 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 67, 28

Conread position: 124-303
Cow position: chr12:6698413-6698599 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 25, 143

Conread position: 129-333
Cow position: chr12:17270191-17270403 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 158
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 62

Conread position: 138-332
Cow position: chr12:18020501-18020713 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 11, 203

Conread position: 138-392
Cow position: chr12:4342072-4341813 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 202
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 11, 195

Conread position: 138-392
Cow position: chr12:18577495-18577765 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 195
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 11, 254

Conread position: 139-332
Cow position: chr12:12976536-12976321 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 8, 205

Conread position: 141-392
Cow position: chr12:9710553-9710283 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 189
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 8, 264

Conread position: 145-392
Cow position: chr12:9465802-9465536 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 194
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 45, 8

Conread position: 148-410
Cow position: chr12:18572297-18572575 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 190
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 35, 229

Conread position: 153-392
Cow position: chr12:22261149-22260896 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 183
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 39, 112

Conread position: 153-414
Cow position: chr12:46143487-46143771 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 211
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 37, 25

Conread position: 155-343
Cow position: chr12:34466329-34466148 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 20, 35

Conread position: 158-392
Cow position: chr12:1343426-1343186 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 181
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 34, 64

Conread position: 159-288
Cow position: chr12:12199234-12199100 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 125

Conread position: 161-350
Cow position: chr12:31925327-31925530 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 162
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 53, 26

Conread position: 166-335
Cow position: chr12:37481452-37481283 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 25, 126

Conread position: 173-292
Cow position: chr12:30745398-30745522 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 173-397
Cow position: chr12:12017559-12017809 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 17, 248

Conread position: 173-397
Cow position: chr12:26782566-26782814 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 178
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 17, 229

Conread position: 175-398
Cow position: chr12:45065521-45065752 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 150

Conread position: 182-392
Cow position: chr12:20479616-20479402 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 44, 7

Conread position: 182-398
Cow position: chr12:3055832-3056064 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 171
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 9

Conread position: 190-391
Cow position: chr12:40270383-40270166 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 166
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 30, 77

Conread position: 190-392
Cow position: chr12:6411025-6410807 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 159
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 30, 139

Conread position: 190-400
Cow position: chr12:48415808-48415580 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 38, 205

Conread position: 192-391
Cow position: chr12:37733071-37732858 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 24, 8

Conread position: 196-391
Cow position: chr12:45431266-45431074 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 122, 74

Conread position: 196-392
Cow position: chr12:5714338-5714555 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 161
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 23, 201

Conread position: 196-392
Cow position: chr12:28650666-28650882 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 160
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 75, 28

Conread position: 196-413
Cow position: chr12:32391554-32391796 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 23, 141

Conread position: 197-392
Cow position: chr12:30590487-30590694 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 22, 148

Conread position: 197-420
Cow position: chr12:36954665-36954427 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 170
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 17, 193

Conread position: 198-415
Cow position: chr12:40110100-40110332 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 171
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 21, 74

Conread position: 205-414
Cow position: chr12:41214600-41214372 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 66, 18

Conread position: 213-391
Cow position: chr12:37727876-37728066 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 45, 175

Conread position: 226-414
Cow position: chr12:17625076-17624876 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 41, 162

Conread position: 226-510
Cow position: chr12:34429401-34429108 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 208
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 45, 103

Conread position: 397-515
Cow position: chr12:4182314-4182196 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 6, 53

Conread position: 402-509
Cow position: chr12:25596617-25596725 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 402-515
Cow position: chr12:4866796-4866913 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 405-509
Cow position: chr12:43854876-43854983 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 43, 16

Conread position: 405-512
Cow position: chr12:7457563-7457452 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 43, 0

Show alignments to all cow chromosomes.