Cow genome map

Conread name: reru03c_c10.y1

Conread position: 1-275
Cow position: chr20:9267534-9267248 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 195

Conread position: 1-281
Cow position: chr20:5939383-5939091 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 149

Conread position: 1-291
Cow position: chr20:31845988-31845693 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 274

Conread position: 1-292
Cow position: chr20:6239054-6238754 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 0

Conread position: 1-294
Cow position: chr20:29586638-29586348 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 206
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 11, 86

Conread position: 1-300
Cow position: chr20:15821909-15822217 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 140

Conread position: 1-301
Cow position: chr20:19363768-19363466 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 116

Conread position: 1-302
Cow position: chr20:8429344-8429643 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 108

Conread position: 1-302
Cow position: chr20:34900411-34900720 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 225
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 13, 168

Conread position: 1-303
Cow position: chr20:35970538-35970842 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 81

Conread position: 1-310
Cow position: chr20:16957225-16956917 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 223
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 83, 57

Conread position: 1-315
Cow position: chr20:32866751-32866421 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 49

Conread position: 1-316
Cow position: chr20:4945652-4945327 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 108

Conread position: 1-316
Cow position: chr20:13267835-13267507 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 93

Conread position: 1-320
Cow position: chr20:7757034-7756702 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 190

Conread position: 1-332
Cow position: chr20:4893320-4892964 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 346

Conread position: 1-332
Cow position: chr20:8577841-8578185 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 96

Conread position: 1-332
Cow position: chr20:11453767-11453417 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 1-332
Cow position: chr20:12442103-12441748 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 131

Conread position: 1-332
Cow position: chr20:20353321-20352977 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 0

Conread position: 1-332
Cow position: chr20:21019159-21019501 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 83

Conread position: 1-332
Cow position: chr20:24399033-24398697 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 74

Conread position: 1-332
Cow position: chr20:33363108-33363454 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 49

Conread position: 1-332
Cow position: chr20:39418288-39417960 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 243
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 219, 114

Conread position: 1-334
Cow position: chr20:14756476-14756128 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 1-334
Cow position: chr20:35113124-35113474 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 345

Conread position: 1-335
Cow position: chr20:14740495-14740155 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 147

Conread position: 1-340
Cow position: chr20:581328-580974 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 68

Conread position: 1-340
Cow position: chr20:12839650-12840005 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 198

Conread position: 1-340
Cow position: chr20:22446044-22445689 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 338

Conread position: 1-340
Cow position: chr20:35958265-35958594 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 252
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 148, 69

Conread position: 1-343
Cow position: chr20:19352174-19351817 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 195

Conread position: 1-344
Cow position: chr20:14719147-14718790 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 0

Conread position: 1-350
Cow position: chr20:9014755-9014383 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 0

Conread position: 1-350
Cow position: chr20:10913741-10913370 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 188

Conread position: 1-350
Cow position: chr20:41977016-41977377 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 113

Conread position: 1-351
Cow position: chr20:4781154-4781529 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 270
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 132, 59

Conread position: 1-351
Cow position: chr20:11614450-11614078 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 0

Conread position: 1-351
Cow position: chr20:18530034-18530404 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 261
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 67, 198

Conread position: 1-351
Cow position: chr20:27565608-27565977 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 195

Conread position: 1-352
Cow position: chr20:7131947-7132299 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 260
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 21, 38

Conread position: 1-356
Cow position: chr20:9707302-9706931 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 258
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 51, 95

Conread position: 1-388
Cow position: chr20:5104841-5104436 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 393

Conread position: 1-388
Cow position: chr20:36374345-36373940 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 269
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 52, 45

Conread position: 1-391
Cow position: chr20:26076675-26077088 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 181

Conread position: 1-392
Cow position: chr20:3781839-3781418 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 340

Conread position: 1-392
Cow position: chr20:4621743-4621336 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 24

Conread position: 1-392
Cow position: chr20:7806969-7806551 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 401

Conread position: 1-392
Cow position: chr20:13877116-13876696 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 325

Conread position: 1-392
Cow position: chr20:14832032-14831606 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 408

Conread position: 1-392
Cow position: chr20:16714997-16715404 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 176

Conread position: 1-392
Cow position: chr20:17734183-17733766 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 171

Conread position: 1-392
Cow position: chr20:23065250-23064822 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 348

Conread position: 1-392
Cow position: chr20:23679560-23679139 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 11

Conread position: 1-392
Cow position: chr20:31927865-31927449 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 400

Conread position: 1-393
Cow position: chr20:12155515-12155108 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 11

Conread position: 1-398
Cow position: chr20:12996421-12995997 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 339

Conread position: 1-400
Cow position: chr20:9536730-9537153 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 29

Conread position: 1-409
Cow position: chr20:21324700-21325141 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 314

Conread position: 1-410
Cow position: chr20:27339657-27340089 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 18

Conread position: 1-414
Cow position: chr20:9433205-9433617 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 56

Conread position: 1-414
Cow position: chr20:26469483-26469032 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 17

Conread position: 1-414
Cow position: chr20:29844636-29845081 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 404

Conread position: 1-415
Cow position: chr20:3599805-3599364 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 89

Conread position: 1-415
Cow position: chr20:9474020-9473581 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 155

Conread position: 1-415
Cow position: chr20:18185167-18185596 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 12

Conread position: 1-427
Cow position: chr20:35145600-35146041 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 306

Conread position: 2-288
Cow position: chr20:6258468-6258175 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 96

Conread position: 2-292
Cow position: chr20:32846947-32847243 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 96

Conread position: 2-316
Cow position: chr20:7710615-7710288 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 2-316
Cow position: chr20:10178501-10178184 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 78

Conread position: 2-316
Cow position: chr20:10235446-10235778 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 0

Conread position: 2-331
Cow position: chr20:14806480-14806822 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 48

Conread position: 2-334
Cow position: chr20:398695-398363 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 49

Conread position: 2-334
Cow position: chr20:13269221-13269566 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 131

Conread position: 2-391
Cow position: chr20:40423500-40423095 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 10

Conread position: 2-393
Cow position: chr20:30817130-30817545 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 163

Conread position: 2-415
Cow position: chr20:34001795-34001358 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 102

Conread position: 3-286
Cow position: chr20:13821993-13821703 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 209
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 58, 231

Conread position: 3-316
Cow position: chr20:36780140-36779808 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 100

Conread position: 3-350
Cow position: chr20:13817440-13817806 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 259
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 66, 229

Conread position: 3-390
Cow position: chr20:38935613-38935230 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 89

Conread position: 3-392
Cow position: chr20:19146464-19146883 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 21

Conread position: 3-392
Cow position: chr20:23871225-23870812 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 349

Conread position: 3-397
Cow position: chr20:19410768-19410351 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 9

Conread position: 4-409
Cow position: chr20:12048004-12048419 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 217

Conread position: 5-334
Cow position: chr20:13493334-13493674 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 8-312
Cow position: chr20:6423568-6423877 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 55

Conread position: 8-340
Cow position: chr20:23849892-23850232 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 134

Conread position: 8-391
Cow position: chr20:20983626-20984004 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 42

Conread position: 10-330
Cow position: chr20:39375790-39376110 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 204

Conread position: 14-332
Cow position: chr20:32548575-32548899 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 56

Conread position: 14-398
Cow position: chr20:18100025-18100427 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 227

Conread position: 16-350
Cow position: chr20:18413462-18413811 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 249
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 43, 9

Conread position: 19-333
Cow position: chr20:13501537-13501870 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 236
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 73, 183

Conread position: 21-349
Cow position: chr20:40176866-40177207 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 234
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 167, 0

Conread position: 22-316
Cow position: chr20:28604829-28605126 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 89

Conread position: 22-317
Cow position: chr20:5702362-5702672 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 162

Conread position: 22-331
Cow position: chr20:31747009-31746692 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 168

Conread position: 23-300
Cow position: chr20:3501909-3502196 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 24-288
Cow position: chr20:3034719-3034983 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 75

Conread position: 26-332
Cow position: chr20:18321176-18320854 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 145

Conread position: 29-392
Cow position: chr20:39377518-39377153 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 160

Conread position: 31-332
Cow position: chr20:3659077-3658762 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 151

Conread position: 33-385
Cow position: chr20:33170246-33169871 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 143

Conread position: 34-398
Cow position: chr20:33531936-33532321 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 149

Conread position: 35-269
Cow position: chr20:4335058-4334820 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 178
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 31, 81

Conread position: 37-351
Cow position: chr20:23164249-23163912 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 245
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 24, 317

Conread position: 39-392
Cow position: chr20:19460009-19459659 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 43

Conread position: 41-392
Cow position: chr20:19313432-19313056 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 149

Conread position: 43-395
Cow position: chr20:40304213-40303858 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 232

Conread position: 47-272
Cow position: chr20:28982341-28982566 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 168
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 102, 121

Conread position: 53-340
Cow position: chr20:41119568-41119860 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 215
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 96, 117

Conread position: 53-392
Cow position: chr20:17903804-17904168 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 131

Conread position: 54-350
Cow position: chr20:27299097-27298776 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 227
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 69, 305

Conread position: 60-392
Cow position: chr20:22959691-22959335 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 89

Conread position: 61-391
Cow position: chr20:38817669-38818013 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 248
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 88, 122

Conread position: 62-332
Cow position: chr20:6570986-6571266 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 207
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 85, 268

Conread position: 62-392
Cow position: chr20:19750966-19751316 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 127

Conread position: 63-316
Cow position: chr20:20202871-20203138 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 63-319
Cow position: chr20:24363300-24363569 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 212
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 152, 18

Conread position: 63-350
Cow position: chr20:32667645-32667952 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 221
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 86, 0

Conread position: 63-514
Cow position: chr20:12334038-12334511 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 78

Conread position: 64-288
Cow position: chr20:35922214-35921982 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 174
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 85, 34

Conread position: 70-316
Cow position: chr20:24069477-24069726 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 189
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 79, 136

Conread position: 71-309
Cow position: chr20:33144891-33144649 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 188
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 10, 139

Conread position: 76-334
Cow position: chr20:9412164-9412429 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 197
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 73, 152

Conread position: 76-352
Cow position: chr20:31740544-31740257 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 198
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 73, 100

Conread position: 77-390
Cow position: chr20:27314343-27314682 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 248
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 68, 171

Conread position: 80-392
Cow position: chr20:32636903-32636561 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 245
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 50, 12

Conread position: 85-384
Cow position: chr20:19328080-19328402 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 241
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 64, 7

Conread position: 85-410
Cow position: chr20:19236768-19237104 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 253
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 64, 71

Conread position: 88-392
Cow position: chr20:33435482-33435158 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 244
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 61, 88

Conread position: 89-414
Cow position: chr20:17251392-17251748 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 174

Conread position: 92-414
Cow position: chr20:35797288-35797642 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 259
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 12, 34

Conread position: 94-497
Cow position: chr20:18399447-18399877 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 311

Conread position: 97-310
Cow position: chr20:21345091-21345316 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 52, 0

Conread position: 97-400
Cow position: chr20:24002018-24002329 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 79

Conread position: 99-391
Cow position: chr20:5998984-5998665 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 222
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 7, 187

Conread position: 105-332
Cow position: chr20:39398177-39398423 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 181
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 47, 236

Conread position: 107-391
Cow position: chr20:13751945-13752241 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 223
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 42, 79

Conread position: 108-334
Cow position: chr20:38670139-38670369 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 160
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 41, 84

Conread position: 113-297
Cow position: chr20:42278413-42278604 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 36, 0

Conread position: 116-374
Cow position: chr20:16291187-16291463 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 210
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 33, 67

Conread position: 117-414
Cow position: chr20:15761238-15760919 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 231
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 32, 75

Conread position: 118-334
Cow position: chr20:7426479-7426249 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 180
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 31, 20

Conread position: 118-395
Cow position: chr20:39728161-39728460 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 222
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 31, 72

Conread position: 122-288
Cow position: chr20:8096601-8096773 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 27, 120

Conread position: 122-292
Cow position: chr20:25009926-25009752 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 28, 54

Conread position: 125-321
Cow position: chr20:12582231-12582034 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 158
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 14, 151

Conread position: 125-333
Cow position: chr20:31147813-31148027 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 27, 103

Conread position: 129-350
Cow position: chr20:36997437-36997678 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 176
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 48

Conread position: 133-410
Cow position: chr20:21714477-21714782 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 216
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 16, 58

Conread position: 135-292
Cow position: chr20:26058341-26058179 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 14, 0

Conread position: 142-414
Cow position: chr20:7659475-7659187 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 205
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 7, 64

Conread position: 148-350
Cow position: chr20:15582294-15582075 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 169
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 42, 52

Conread position: 148-392
Cow position: chr20:5950888-5950632 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 183
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 42, 27

Conread position: 148-410
Cow position: chr20:24521492-24521775 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 205
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 42, 250

Conread position: 148-414
Cow position: chr20:13967518-13967226 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 214
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 28, 42

Conread position: 155-294
Cow position: chr20:36039960-36040105 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 156-391
Cow position: chr20:3607202-3606955 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 172
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 35, 170

Conread position: 157-391
Cow position: chr20:22235062-22235317 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 186
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 27, 180

Conread position: 167-392
Cow position: chr20:20312977-20312738 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 182
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 23, 108

Conread position: 168-391
Cow position: chr20:10200102-10200350 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 190
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 22, 233

Conread position: 169-391
Cow position: chr20:6903091-6903322 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 22, 158

Conread position: 183-391
Cow position: chr20:7442346-7442120 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 37, 7

Conread position: 183-392
Cow position: chr20:12205934-12205726 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 161
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 43, 6

Conread position: 183-392
Cow position: chr20:22007282-22007508 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 39, 7

Conread position: 183-392
Cow position: chr20:40185895-40185673 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 88, 7

Conread position: 183-449
Cow position: chr20:14735455-14735740 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 199
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 36, 7

Conread position: 189-392
Cow position: chr20:8910707-8910926 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 25, 84

Conread position: 190-340
Cow position: chr20:5025518-5025356 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 190-391
Cow position: chr20:29633207-29632993 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 30, 106

Conread position: 190-414
Cow position: chr20:26679908-26680154 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 180
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 32, 210

Conread position: 191-392
Cow position: chr20:28067644-28067418 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 166
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 192-403
Cow position: chr20:9379195-9379429 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 168
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 28, 207

Conread position: 195-392
Cow position: chr20:34251889-34251671 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 171
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 25, 78

Conread position: 196-340
Cow position: chr20:1139983-1139827 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 196-391
Cow position: chr20:40511967-40511751 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 23, 134

Conread position: 196-392
Cow position: chr20:35907256-35907043 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 23, 194

Conread position: 196-414
Cow position: chr20:34776976-34777210 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 169
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 18, 193

Conread position: 198-413
Cow position: chr20:14572564-14572336 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 169
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 17, 132

Conread position: 212-442
Cow position: chr20:13994617-13994871 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 183
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 16, 186

Conread position: 213-400
Cow position: chr20:20739480-20739270 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 163
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 15, 188

Conread position: 213-410
Cow position: chr20:9923408-9923608 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 55, 13

Conread position: 226-392
Cow position: chr20:11923416-11923234 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 68, 163

Conread position: 402-510
Cow position: chr20:28935579-28935473 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 92
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 35, 0

Conread position: 402-512
Cow position: chr20:20967381-20967495 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 96
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 402-512
Cow position: chr20:22959287-22959174 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 402-512
Cow position: chr20:35727870-35727756 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 402-514
Cow position: chr20:2148132-2148017 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 402-515
Cow position: chr20:34202695-34202812 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 406-512
Cow position: chr20:206585-206477 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 406-514
Cow position: chr20:14282984-14283096 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 406-514
Cow position: chr20:18763203-18763310 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 406-515
Cow position: chr20:15515376-15515263 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 407-512
Cow position: chr20:27323331-27323440 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 408-515
Cow position: chr20:34097887-34097776 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 43, 0

Show alignments to all cow chromosomes.