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Cow genome map

           
Conread name:
           
reru03c_c10.y1
        

               
Conread position:
               
1-274
               

               
Cow position:
               
chrX:6012531-6012252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
14, 55
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chrX:17964939-17964667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
62, 38
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chrX:25205281-25205575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
69, 88
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chrX:2351639-2351931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chrX:6654740-6654433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
70, 159
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chrX:42171722-42171431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 178
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chrX:3654186-3654477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
148, 62
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chrX:17743647-17743935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
71, 59
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chrX:22115708-22115407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 53
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chrX:27323284-27322995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chrX:41304166-41303866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
76, 31
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chrX:24105204-24105511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 96
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chrX:34554312-34554609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 141
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chrX:45967738-45968047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 190
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chrX:42585486-42585181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
56, 27
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chrX:917800-917474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chrX:12096669-12096357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 91
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chrX:24424815-24424487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chrX:9252594-9252269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 38
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chrX:33803444-33803103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
62, 142
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chrX:43217966-43218296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 280
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chrX:22329999-22329660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
56, 148
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chrX:23218652-23218982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
35, 11
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chrX:8899602-8899937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 74
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chrX:29049552-29049884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 97
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chrX:160463-160112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 181
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chrX:10916325-10916670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 276
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chrX:15486048-15485703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 175
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chrX:28111071-28111427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
66, 85
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chrX:38967228-38967569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 161
               

               
Conread position:
               
1-332
               

               
Cow position:
               
chrX:48370672-48371021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 339
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chrX:10866290-10865944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chrX:13177883-13177542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
59, 37
               

               
Conread position:
               
1-334
               

               
Cow position:
               
chrX:35937487-35937157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
38, 33
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chrX:17271706-17271360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
149, 32
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chrX:25337770-25338108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
148, 64
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chrX:42470360-42470016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 275
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chrX:38072190-38071832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 164
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chrX:31261060-31260696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 345
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chrX:36840438-36840806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 346
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chrX:45430442-45430081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 337
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chrX:2524158-2523795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chrX:28516261-28515915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
58, 86
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chrX:39546402-39546034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 354
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chrX:12249378-12249748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 336
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chrX:21319269-21319615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
59, 138
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chrX:12309809-12309438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 50
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chrX:20504338-20504695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
68, 133
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chrX:15596628-15596998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 38
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chrX:41790855-41790462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 39
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chrX:23564220-23563806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 406
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chrX:40452643-40452225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 11
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chrX:48247260-48246860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 101
               

               
Conread position:
               
1-391
               

               
Cow position:
               
chrX:1616480-1616053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 347
               

               
Conread position:
               
1-391
               

               
Cow position:
               
chrX:32128417-32127999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 376
               

               
Conread position:
               
1-391
               

               
Cow position:
               
chrX:45501724-45502136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 397
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chrX:151480-151896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 46
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chrX:4044281-4043868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 337
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chrX:10412395-10411994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 77
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chrX:11073634-11073201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 417
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chrX:11083037-11082632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 334
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chrX:16790240-16789860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 68
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chrX:21666014-21665602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 160
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chrX:27705170-27705578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 43
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chrX:28133926-28134338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 177
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chrX:31949353-31948945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 122
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chrX:34564877-34565273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 169
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chrX:38227515-38227101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 275
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chrX:38439053-38439470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 70
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chrX:39558790-39558358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 348
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chrX:41879353-41878940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 226
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chrX:44192865-44192457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 84
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chrX:7277509-7277906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 38
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chrX:1055815-1055398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 17
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chrX:11655654-11656090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 349
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chrX:22812639-22813064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 404
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chrX:31489089-31489516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 405
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chrX:35223879-35224294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 228
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chrX:14599113-14599533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 121
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chrX:34754615-34754189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 402
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chrX:12115618-12116048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 188
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chrX:15139972-15139537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 155
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chrX:41122648-41123072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 71
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chrX:15007574-15007135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 401
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chrX:17497673-17498099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 274
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chrX:20340312-20339877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 68
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chrX:21592863-21593301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 174
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chrX:35268471-35268880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 15
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chrX:38963690-38964122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 55
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chrX:42462171-42461730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 339
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chrX:28866410-28865988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 68
               

               
Conread position:
               
1-512
               

               
Cow position:
               
chrX:42086440-42086985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 22
               

               
Conread position:
               
2-281
               

               
Cow position:
               
chrX:32871208-32870925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 246
               

               
Conread position:
               
2-288
               

               
Cow position:
               
chrX:41192267-41192555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 188
               

               
Conread position:
               
2-316
               

               
Cow position:
               
chrX:14884384-14884052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 110
               

               
Conread position:
               
2-320
               

               
Cow position:
               
chrX:3207987-3207652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
69, 6
               

               
Conread position:
               
2-320
               

               
Cow position:
               
chrX:4123414-4123742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 81
               

               
Conread position:
               
2-332
               

               
Cow position:
               
chrX:6543835-6544177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 17
               

               
Conread position:
               
2-332
               

               
Cow position:
               
chrX:37231989-37232334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 170
               

               
Conread position:
               
2-337
               

               
Cow position:
               
chrX:37760431-37760774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
51, 200
               

               
Conread position:
               
2-341
               

               
Cow position:
               
chrX:9651468-9651127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 273
               

               
Conread position:
               
2-350
               

               
Cow position:
               
chrX:17794573-17794929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 174
               

               
Conread position:
               
2-351
               

               
Cow position:
               
chrX:7571481-7571850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 194
               

               
Conread position:
               
2-388
               

               
Cow position:
               
chrX:26626116-26625688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 357
               

               
Conread position:
               
2-389
               

               
Cow position:
               
chrX:4633279-4632862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 164
               

               
Conread position:
               
2-390
               

               
Cow position:
               
chrX:12437657-12437280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 115
               

               
Conread position:
               
2-391
               

               
Cow position:
               
chrX:34532109-34532510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 269
               

               
Conread position:
               
2-392
               

               
Cow position:
               
chrX:5017826-5017422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 16
               

               
Conread position:
               
2-392
               

               
Cow position:
               
chrX:34238298-34238707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 81
               

               
Conread position:
               
2-392
               

               
Cow position:
               
chrX:35680922-35681333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 86
               

               
Conread position:
               
2-414
               

               
Cow position:
               
chrX:29876478-29876059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
61, 176
               

               
Conread position:
               
2-511
               

               
Cow position:
               
chrX:35388329-35387769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 338
               

               
Conread position:
               
3-351
               

               
Cow position:
               
chrX:45113214-45113566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 174
               

               
Conread position:
               
3-358
               

               
Cow position:
               
chrX:30919817-30919445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
64, 20
               

               
Conread position:
               
3-363
               

               
Cow position:
               
chrX:31729037-31729396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 270
               

               
Conread position:
               
3-382
               

               
Cow position:
               
chrX:40481291-40480886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 9
               

               
Conread position:
               
3-384
               

               
Cow position:
               
chrX:12290316-12290706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 186
               

               
Conread position:
               
3-391
               

               
Cow position:
               
chrX:18695347-18694935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
3-391
               

               
Cow position:
               
chrX:35609565-35609980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
3-414
               

               
Cow position:
               
chrX:161007-161426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 229
               

               
Conread position:
               
4-391
               

               
Cow position:
               
chrX:20582610-20583011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 271
               

               
Conread position:
               
5-392
               

               
Cow position:
               
chrX:34441866-34441459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 178
               

               
Conread position:
               
6-415
               

               
Cow position:
               
chrX:13868279-13868719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 170
               

               
Conread position:
               
8-308
               

               
Cow position:
               
chrX:32743122-32743432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
8-325
               

               
Cow position:
               
chrX:11581521-11581857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 92
               

               
Conread position:
               
8-350
               

               
Cow position:
               
chrX:35409252-35409604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 259
               

               
Conread position:
               
8-370
               

               
Cow position:
               
chrX:18293517-18293892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
63, 43
               

               
Conread position:
               
8-392
               

               
Cow position:
               
chrX:27446274-27446688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 169
               

               
Conread position:
               
10-334
               

               
Cow position:
               
chrX:36250276-36249938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
12-286
               

               
Cow position:
               
chrX:47211264-47210981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
12-335
               

               
Cow position:
               
chrX:20976479-20976151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
50, 179
               

               
Conread position:
               
12-350
               

               
Cow position:
               
chrX:38577120-38577466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
12-383
               

               
Cow position:
               
chrX:39556227-39555854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 14
               

               
Conread position:
               
14-390
               

               
Cow position:
               
chrX:45413061-45412669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 43
               

               
Conread position:
               
14-392
               

               
Cow position:
               
chrX:8796841-8797245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 121
               

               
Conread position:
               
14-398
               

               
Cow position:
               
chrX:20888054-20887647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 250
               

               
Conread position:
               
14-413
               

               
Cow position:
               
chrX:42994204-42994626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 250
               

               
Conread position:
               
14-417
               

               
Cow position:
               
chrX:17888798-17888402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
46, 109
               

               
Conread position:
               
16-354
               

               
Cow position:
               
chrX:18990194-18989862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
133, 10
               

               
Conread position:
               
19-288
               

               
Cow position:
               
chrX:42587834-42587557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
19-314
               

               
Cow position:
               
chrX:23583153-23583456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 289
               

               
Conread position:
               
19-343
               

               
Cow position:
               
chrX:3161429-3161082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 334
               

               
Conread position:
               
22-284
               

               
Cow position:
               
chrX:29723049-29723317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
22-392
               

               
Cow position:
               
chrX:30543689-30543296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 17
               

               
Conread position:
               
23-325
               

               
Cow position:
               
chrX:47379868-47379563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 252
               

               
Conread position:
               
23-350
               

               
Cow position:
               
chrX:21063896-21064228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
126, 58
               

               
Conread position:
               
24-392
               

               
Cow position:
               
chrX:42247574-42247194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 9
               

               
Conread position:
               
25-332
               

               
Cow position:
               
chrX:21795096-21795417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 59
               

               
Conread position:
               
25-351
               

               
Cow position:
               
chrX:126386-126730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 204
               

               
Conread position:
               
26-300
               

               
Cow position:
               
chrX:44907918-44908204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
165, 123
               

               
Conread position:
               
26-351
               

               
Cow position:
               
chrX:32978655-32978310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 241
               

               
Conread position:
               
32-302
               

               
Cow position:
               
chrX:42508035-42507764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 18
               

               
Conread position:
               
32-358
               

               
Cow position:
               
chrX:7695372-7695701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 103
               

               
Conread position:
               
33-316
               

               
Cow position:
               
chrX:48248428-48248731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
33-392
               

               
Cow position:
               
chrX:34401607-34401990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 302
               

               
Conread position:
               
34-350
               

               
Cow position:
               
chrX:38218328-38218656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
115, 150
               

               
Conread position:
               
35-288
               

               
Cow position:
               
chrX:25419553-25419289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
16, 152
               

               
Conread position:
               
36-350
               

               
Cow position:
               
chrX:2300537-2300869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
36-392
               

               
Cow position:
               
chrX:37489330-37489715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 251
               

               
Conread position:
               
38-392
               

               
Cow position:
               
chrX:7718466-7718846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 142
               

               
Conread position:
               
41-358
               

               
Cow position:
               
chrX:31373195-31373511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 112
               

               
Conread position:
               
41-414
               

               
Cow position:
               
chrX:41198703-41199120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
44-410
               

               
Cow position:
               
chrX:7178528-7178907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 136
               

               
Conread position:
               
45-290
               

               
Cow position:
               
chrX:25035765-25035517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 124
               

               
Conread position:
               
46-294
               

               
Cow position:
               
chrX:33855618-33855354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
103, 95
               

               
Conread position:
               
46-390
               

               
Cow position:
               
chrX:41743535-41743902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
50-361
               

               
Cow position:
               
chrX:11844612-11844287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 126
               

               
Conread position:
               
50-391
               

               
Cow position:
               
chrX:11718152-11717797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 46
               

               
Conread position:
               
51-332
               

               
Cow position:
               
chrX:20697977-20697683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 128
               

               
Conread position:
               
51-382
               

               
Cow position:
               
chrX:28105553-28105902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 95
               

               
Conread position:
               
51-392
               

               
Cow position:
               
chrX:34502550-34502914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 132
               

               
Conread position:
               
54-410
               

               
Cow position:
               
chrX:31250022-31250398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 75
               

               
Conread position:
               
57-298
               

               
Cow position:
               
chrX:5640986-5640756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
92, 131
               

               
Conread position:
               
57-351
               

               
Cow position:
               
chrX:47343925-47344241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
59-351
               

               
Cow position:
               
chrX:30338284-30337999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
70, 63
               

               
Conread position:
               
61-300
               

               
Cow position:
               
chrX:48227982-48227728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
61-325
               

               
Cow position:
               
chrX:25283503-25283234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 101
               

               
Conread position:
               
62-351
               

               
Cow position:
               
chrX:2786908-2786611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
87, 146
               

               
Conread position:
               
62-389
               

               
Cow position:
               
chrX:25848553-25848901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
87, 319
               

               
Conread position:
               
62-414
               

               
Cow position:
               
chrX:11614359-11614712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 197
               

               
Conread position:
               
63-392
               

               
Cow position:
               
chrX:5127562-5127894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
89, 68
               

               
Conread position:
               
64-325
               

               
Cow position:
               
chrX:7381964-7382239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 77
               

               
Conread position:
               
65-293
               

               
Cow position:
               
chrX:44731241-44731472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
84, 115
               

               
Conread position:
               
65-310
               

               
Cow position:
               
chrX:37843361-37843611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 236
               

               
Conread position:
               
70-315
               

               
Cow position:
               
chrX:32747304-32747564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
70-391
               

               
Cow position:
               
chrX:13912725-13913058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
79, 267
               

               
Conread position:
               
70-391
               

               
Cow position:
               
chrX:28787017-28787346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
79, 34
               

               
Conread position:
               
70-392
               

               
Cow position:
               
chrX:19689861-19690210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
79, 42
               

               
Conread position:
               
71-392
               

               
Cow position:
               
chrX:31443173-31442839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 72
               

               
Conread position:
               
72-334
               

               
Cow position:
               
chrX:47967248-47967524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
74-392
               

               
Cow position:
               
chrX:42492880-42492525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
75, 339
               

               
Conread position:
               
75-350
               

               
Cow position:
               
chrX:32171231-32170943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
74, 198
               

               
Conread position:
               
76-340
               

               
Cow position:
               
chrX:31436132-31436410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
76-415
               

               
Cow position:
               
chrX:44396672-44397030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
99, 75
               

               
Conread position:
               
77-302
               

               
Cow position:
               
chrX:46771319-46771086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 200
               

               
Conread position:
               
79-307
               

               
Cow position:
               
chrX:18999553-18999775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
70, 146
               

               
Conread position:
               
80-330
               

               
Cow position:
               
chrX:47054860-47054615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
72, 96
               

               
Conread position:
               
80-414
               

               
Cow position:
               
chrX:47481456-47481814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
67, 58
               

               
Conread position:
               
80-514
               

               
Cow position:
               
chrX:41403617-41404104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
69, 338
               

               
Conread position:
               
80-514
               

               
Cow position:
               
chrX:41410165-41410652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
69, 338
               

               
Conread position:
               
82-391
               

               
Cow position:
               
chrX:40558018-40557690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
67, 193
               

               
Conread position:
               
84-410
               

               
Cow position:
               
chrX:36778065-36778418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
65, 253
               

               
Conread position:
               
86-340
               

               
Cow position:
               
chrX:43527164-43527434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
92-392
               

               
Cow position:
               
chrX:6234766-6234460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
57, 32
               

               
Conread position:
               
92-394
               

               
Cow position:
               
chrX:7645926-7646246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
57, 184
               

               
Conread position:
               
92-411
               

               
Cow position:
               
chrX:33205326-33204999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
9, 233
               

               
Conread position:
               
93-402
               

               
Cow position:
               
chrX:14924669-14925003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
56, 151
               

               
Conread position:
               
94-410
               

               
Cow position:
               
chrX:34270087-34270412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
96, 81
               

               
Conread position:
               
95-394
               

               
Cow position:
               
chrX:42855082-42855403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
54, 89
               

               
Conread position:
               
97-332
               

               
Cow position:
               
chrX:38007095-38006843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
52, 242
               

               
Conread position:
               
98-332
               

               
Cow position:
               
chrX:15545571-15545815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
102-392
               

               
Cow position:
               
chrX:28157165-28157490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
47, 21
               

               
Conread position:
               
104-316
               

               
Cow position:
               
chrX:34990721-34990941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
46, 170
               

               
Conread position:
               
105-316
               

               
Cow position:
               
chrX:26619680-26619455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
86, 19
               

               
Conread position:
               
106-293
               

               
Cow position:
               
chrX:33639650-33639845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 35
               

               
Conread position:
               
107-278
               

               
Cow position:
               
chrX:616720-616547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
42, 69
               

               
Conread position:
               
108-392
               

               
Cow position:
               
chrX:28845528-28845824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
41, 185
               

               
Conread position:
               
108-413
               

               
Cow position:
               
chrX:8925389-8925712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
13, 76
               

               
Conread position:
               
114-323
               

               
Cow position:
               
chrX:39704395-39704603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
76, 88
               

               
Conread position:
               
114-391
               

               
Cow position:
               
chrX:19188626-19188929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
35, 288
               

               
Conread position:
               
115-392
               

               
Cow position:
               
chrX:23061145-23061426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
34, 188
               

               
Conread position:
               
116-360
               

               
Cow position:
               
chrX:20709767-20710027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 62
               

               
Conread position:
               
117-269
               

               
Cow position:
               
chrX:45410350-45410192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
117-292
               

               
Cow position:
               
chrX:48135187-48135005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 81
               

               
Conread position:
               
118-351
               

               
Cow position:
               
chrX:11314084-11313836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
31, 218
               

               
Conread position:
               
119-292
               

               
Cow position:
               
chrX:45414605-45414423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
124-512
               

               
Cow position:
               
chrX:33020186-33020595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 276
               

               
Conread position:
               
125-366
               

               
Cow position:
               
chrX:1176273-1176020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
24, 89
               

               
Conread position:
               
126-370
               

               
Cow position:
               
chrX:41238661-41238407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
23, 205
               

               
Conread position:
               
126-391
               

               
Cow position:
               
chrX:19015144-19015424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
23, 205
               

               
Conread position:
               
128-384
               

               
Cow position:
               
chrX:33466321-33466594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
21, 87
               

               
Conread position:
               
131-402
               

               
Cow position:
               
chrX:27509309-27509024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
59, 10
               

               
Conread position:
               
132-351
               

               
Cow position:
               
chrX:22482981-22482739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
132-406
               

               
Cow position:
               
chrX:25237886-25238177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
17, 66
               

               
Conread position:
               
133-292
               

               
Cow position:
               
chrX:35041931-35042096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
16, 41
               

               
Conread position:
               
134-307
               

               
Cow position:
               
chrX:754668-754849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
18, 171
               

               
Conread position:
               
134-325
               

               
Cow position:
               
chrX:4269357-4269152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
136-320
               

               
Cow position:
               
chrX:40647691-40647881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
54, 175
               

               
Conread position:
               
138-344
               

               
Cow position:
               
chrX:46033004-46032796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
11, 77
               

               
Conread position:
               
138-354
               

               
Cow position:
               
chrX:48195327-48195087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
138-392
               

               
Cow position:
               
chrX:31294826-31294571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
11, 53
               

               
Conread position:
               
141-398
               

               
Cow position:
               
chrX:2467597-2467880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
8, 252
               

               
Conread position:
               
142-325
               

               
Cow position:
               
chrX:16531718-16531912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
55, 47
               

               
Conread position:
               
142-398
               

               
Cow position:
               
chrX:16762490-16762767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
7, 49
               

               
Conread position:
               
143-332
               

               
Cow position:
               
chrX:37836308-37836510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
6, 33
               

               
Conread position:
               
143-392
               

               
Cow position:
               
chrX:42874697-42874976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
6, 260
               

               
Conread position:
               
144-351
               

               
Cow position:
               
chrX:9997611-9997388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
5, 25
               

               
Conread position:
               
148-391
               

               
Cow position:
               
chrX:7496974-7497231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
41, 16
               

               
Conread position:
               
148-413
               

               
Cow position:
               
chrX:35413355-35413632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
39, 154
               

               
Conread position:
               
150-311
               

               
Cow position:
               
chrX:5856596-5856422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 77
               

               
Conread position:
               
154-286
               

               
Cow position:
               
chrX:45955912-45956047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 118
               

               
Conread position:
               
155-322
               

               
Cow position:
               
chrX:12018007-12018184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
155-398
               

               
Cow position:
               
chrX:45404102-45403829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 251
               

               
Conread position:
               
156-330
               

               
Cow position:
               
chrX:40183617-40183424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
156-351
               

               
Cow position:
               
chrX:17725711-17725921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
32, 71
               

               
Conread position:
               
158-316
               

               
Cow position:
               
chrX:47247173-47247006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
32, 7
               

               
Conread position:
               
160-415
               

               
Cow position:
               
chrX:46073076-46072802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
64, 34
               

               
Conread position:
               
164-335
               

               
Cow position:
               
chrX:20151591-20151772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
25, 110
               

               
Conread position:
               
165-399
               

               
Cow position:
               
chrX:32020380-32020120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
25, 237
               

               
Conread position:
               
168-382
               

               
Cow position:
               
chrX:19930402-19930633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
7, 13
               

               
Conread position:
               
169-386
               

               
Cow position:
               
chrX:25816150-25815922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
21, 105
               

               
Conread position:
               
169-398
               

               
Cow position:
               
chrX:28878416-28878170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
21, 108
               

               
Conread position:
               
171-414
               

               
Cow position:
               
chrX:23497915-23497653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
18, 158
               

               
Conread position:
               
174-325
               

               
Cow position:
               
chrX:45787405-45787567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
181-392
               

               
Cow position:
               
chrX:27680163-27680387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
181-392
               

               
Cow position:
               
chrX:35284375-35284612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
9, 97
               

               
Conread position:
               
182-325
               

               
Cow position:
               
chrX:6639885-6640041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
42, 8
               

               
Conread position:
               
183-330
               

               
Cow position:
               
chrX:619246-619085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
37, 7
               

               
Conread position:
               
183-388
               

               
Cow position:
               
chrX:34543549-34543768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
31, 7
               

               
Conread position:
               
183-390
               

               
Cow position:
               
chrX:27394254-27394032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
7, 138
               

               
Conread position:
               
183-392
               

               
Cow position:
               
chrX:23514256-23514024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
37, 7
               

               
Conread position:
               
183-392
               

               
Cow position:
               
chrX:31745285-31745070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 7
               

               
Conread position:
               
183-398
               

               
Cow position:
               
chrX:16416270-16416506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 7
               

               
Conread position:
               
183-398
               

               
Cow position:
               
chrX:23970151-23970373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
36, 7
               

               
Conread position:
               
183-513
               

               
Cow position:
               
chrX:2206782-2206438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
37, 7
               

               
Conread position:
               
189-385
               

               
Cow position:
               
chrX:9416926-9416707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
189-391
               

               
Cow position:
               
chrX:13382091-13382321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
33, 215
               

               
Conread position:
               
189-391
               

               
Cow position:
               
chrX:17631035-17630815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 202
               

               
Conread position:
               
189-392
               

               
Cow position:
               
chrX:41167197-41166972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
30, 209
               

               
Conread position:
               
189-392
               

               
Cow position:
               
chrX:42339169-42338954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
31, 134
               

               
Conread position:
               
189-414
               

               
Cow position:
               
chrX:30833071-30832838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
82, 30
               

               
Conread position:
               
190-392
               

               
Cow position:
               
chrX:6690480-6690266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
30, 102
               

               
Conread position:
               
190-392
               

               
Cow position:
               
chrX:15814865-15815076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
24, 104
               

               
Conread position:
               
190-415
               

               
Cow position:
               
chrX:38549216-38549460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
30, 159
               

               
Conread position:
               
190-450
               

               
Cow position:
               
chrX:47757161-47756879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
29, 209
               

               
Conread position:
               
191-392
               

               
Cow position:
               
chrX:37910222-37910434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
27, 15
               

               
Conread position:
               
192-392
               

               
Cow position:
               
chrX:7721754-7721981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 146
               

               
Conread position:
               
193-341
               

               
Cow position:
               
chrX:4942979-4942821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
196-316
               

               
Cow position:
               
chrX:18812032-18812160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
75, 27
               

               
Conread position:
               
196-351
               

               
Cow position:
               
chrX:42381326-42381155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
196-397
               

               
Cow position:
               
chrX:11856203-11856425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
24, 39
               

               
Conread position:
               
196-414
               

               
Cow position:
               
chrX:14900947-14900716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
23, 136
               

               
Conread position:
               
196-514
               

               
Cow position:
               
chrX:39938743-39938398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
75, 14
               

               
Conread position:
               
197-383
               

               
Cow position:
               
chrX:29509669-29509458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
32, 201
               

               
Conread position:
               
197-392
               

               
Cow position:
               
chrX:13265845-13265633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
23, 198
               

               
Conread position:
               
199-392
               

               
Cow position:
               
chrX:1514624-1514418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
21, 98
               

               
Conread position:
               
199-414
               

               
Cow position:
               
chrX:6488363-6488593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
30, 74
               

               
Conread position:
               
201-391
               

               
Cow position:
               
chrX:11633457-11633671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
16, 199
               

               
Conread position:
               
204-414
               

               
Cow position:
               
chrX:29602051-29601814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
10, 128
               

               
Conread position:
               
205-366
               

               
Cow position:
               
chrX:9041446-9041273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
14, 145
               

               
Conread position:
               
205-392
               

               
Cow position:
               
chrX:23091664-23091858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
14, 128
               

               
Conread position:
               
205-392
               

               
Cow position:
               
chrX:29120841-29121038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
24, 66
               

               
Conread position:
               
212-414
               

               
Cow position:
               
chrX:26285771-26285995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 184
               

               
Conread position:
               
213-482
               

               
Cow position:
               
chrX:20752052-20752347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
16, 57
               

               
Conread position:
               
213-513
               

               
Cow position:
               
chrX:16324171-16323859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
15, 163
               

               
Conread position:
               
226-414
               

               
Cow position:
               
chrX:1499476-1499679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
50, 44
               

               
Conread position:
               
226-414
               

               
Cow position:
               
chrX:17908477-17908274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 102
               

               
Conread position:
               
226-477
               

               
Cow position:
               
chrX:44063910-44063645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
44, 166
               

               
Conread position:
               
228-415
               

               
Cow position:
               
chrX:43730406-43730208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
43, 76
               

               
Conread position:
               
401-514
               

               
Cow position:
               
chrX:597431-597319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
402-511
               

               
Cow position:
               
chrX:34420778-34420891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
402-511
               

               
Cow position:
               
chrX:39180189-39180077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
53, 47
               

               
Conread position:
               
402-512
               

               
Cow position:
               
chrX:4091968-4092082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
402-512
               

               
Cow position:
               
chrX:8642090-8642202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
402-512
               

               
Cow position:
               
chrX:20339848-20339736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
402-512
               

               
Cow position:
               
chrX:35285217-35285331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
402-512
               

               
Cow position:
               
chrX:35681611-35681724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 97
               

               
Conread position:
               
402-512
               

               
Cow position:
               
chrX:37129313-37129427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
402-512
               

               
Cow position:
               
chrX:42449970-42449856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
402-514
               

               
Cow position:
               
chrX:12095728-12095612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
402-514
               

               
Cow position:
               
chrX:24331820-24331936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
402-514
               

               
Cow position:
               
chrX:24365777-24365663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
402-514
               

               
Cow position:
               
chrX:42247138-42247022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
405-514
               

               
Cow position:
               
chrX:40336958-40337070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
46, 15
               

               
Conread position:
               
405-515
               

               
Cow position:
               
chrX:5872364-5872478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               
Show alignments to all cow chromosomes.