• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
reru07c_g8.y1
        

               
Conread position:
               
175-569
               

               
Cow position:
               
chr1:81912931-81913334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
33, 13
               

               
Conread position:
               
193-529
               

               
Cow position:
               
chr1:72285871-72286205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
24, 5
               

               
Conread position:
               
201-467
               

               
Cow position:
               
chr1:30504689-30504422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
92, 49
               

               
Conread position:
               
203-544
               

               
Cow position:
               
chr1:26729898-26729559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
66, 123
               

               
Conread position:
               
205-514
               

               
Cow position:
               
chr1:97954263-97954595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
59, 18
               

               
Conread position:
               
206-532
               

               
Cow position:
               
chr1:68845310-68845640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 25
               

               
Conread position:
               
211-514
               

               
Cow position:
               
chr1:41047113-41047436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
212-544
               

               
Cow position:
               
chr1:95017346-95017684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
55, 91
               

               
Conread position:
               
212-569
               

               
Cow position:
               
chr1:53495637-53495281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
76, 11
               

               
Conread position:
               
213-450
               

               
Cow position:
               
chr1:25281464-25281722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
66, 157
               

               
Conread position:
               
213-532
               

               
Cow position:
               
chr1:42873764-42874101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
58, 33
               

               
Conread position:
               
213-535
               

               
Cow position:
               
chr1:40600238-40599886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
53, 44
               

               
Conread position:
               
213-569
               

               
Cow position:
               
chr1:82880844-82880482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 158
               

               
Conread position:
               
213-569
               

               
Cow position:
               
chr1:95177131-95176753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
54, 141
               

               
Conread position:
               
216-441
               

               
Cow position:
               
chr1:92590383-92590142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
49, 155
               

               
Conread position:
               
216-532
               

               
Cow position:
               
chr1:62291531-62291844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
66, 58
               

               
Conread position:
               
217-446
               

               
Cow position:
               
chr1:43822572-43822344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
76, 130
               

               
Conread position:
               
218-536
               

               
Cow position:
               
chr1:4414021-4414366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
45, 34
               

               
Conread position:
               
218-542
               

               
Cow position:
               
chr1:46218758-46218417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 149
               

               
Conread position:
               
219-535
               

               
Cow position:
               
chr1:85029143-85028802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 148
               

               
Conread position:
               
220-536
               

               
Cow position:
               
chr1:70379960-70380303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
46, 141
               

               
Conread position:
               
220-569
               

               
Cow position:
               
chr1:64678886-64678515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
46, 155
               

               
Conread position:
               
223-414
               

               
Cow position:
               
chr1:47402708-47402500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
42, 134
               

               
Conread position:
               
223-450
               

               
Cow position:
               
chr1:41695764-41695538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
43, 65
               

               
Conread position:
               
226-544
               

               
Cow position:
               
chr1:37309348-37309679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
13, 50
               

               
Conread position:
               
227-568
               

               
Cow position:
               
chr1:85774617-85774278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
47, 82
               

               
Conread position:
               
238-535
               

               
Cow position:
               
chr1:100393019-100393318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
123, 29
               

               
Conread position:
               
244-450
               

               
Cow position:
               
chr1:30136214-30136416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
63, 35
               

               
Conread position:
               
267-403
               

               
Cow position:
               
chr1:80442860-80442726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
21, 6
               

               
Conread position:
               
267-544
               

               
Cow position:
               
chr1:38401915-38401627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
44, 6
               

               
Conread position:
               
267-569
               

               
Cow position:
               
chr1:84255897-84255572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
7, 94
               

               
Conread position:
               
268-516
               

               
Cow position:
               
chr1:24542455-24542720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
144, 5
               

               
Conread position:
               
268-569
               

               
Cow position:
               
chr1:61564905-61564610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
181, 5
               

               
Conread position:
               
270-532
               

               
Cow position:
               
chr1:65103741-65103483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
26, 94
               

               
Conread position:
               
271-532
               

               
Cow position:
               
chr1:51968576-51968307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
175, 78
               

               
Conread position:
               
272-516
               

               
Cow position:
               
chr1:39068844-39069093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
36, 5
               

               
Conread position:
               
273-534
               

               
Cow position:
               
chr1:88913442-88913164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
34, 68
               

               
Conread position:
               
274-509
               

               
Cow position:
               
chr1:79640178-79640421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
34, 12
               

               
Conread position:
               
274-532
               

               
Cow position:
               
chr1:96276940-96277209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
34, 11
               

               
Conread position:
               
275-449
               

               
Cow position:
               
chr1:3942107-3942271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
275-528
               

               
Cow position:
               
chr1:92963504-92963248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
139, 31
               

               
Conread position:
               
275-529
               

               
Cow position:
               
chr1:95499387-95499643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
36, 19
               

               
Conread position:
               
275-544
               

               
Cow position:
               
chr1:81355593-81355872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
33, 10
               

               
Conread position:
               
278-541
               

               
Cow position:
               
chr1:71253449-71253717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
30, 6
               

               
Conread position:
               
278-545
               

               
Cow position:
               
chr1:31413861-31414128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
23, 75
               

               
Conread position:
               
279-412
               

               
Cow position:
               
chr1:27959446-27959576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
279-446
               

               
Cow position:
               
chr1:30189257-30189089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
28, 15
               

               
Conread position:
               
279-447
               

               
Cow position:
               
chr1:51044192-51044364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
31, 70
               

               
Conread position:
               
279-447
               

               
Cow position:
               
chr1:97303135-97303303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
61, 139
               

               
Conread position:
               
279-450
               

               
Cow position:
               
chr1:37886695-37886871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
28, 81
               

               
Conread position:
               
279-450
               

               
Cow position:
               
chr1:46143345-46143524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
27, 72
               

               
Conread position:
               
279-450
               

               
Cow position:
               
chr1:49824947-49825131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
22, 81
               

               
Conread position:
               
279-450
               

               
Cow position:
               
chr1:50992039-50991873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
29, 5
               

               
Conread position:
               
279-450
               

               
Cow position:
               
chr1:56618538-56618712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 76
               

               
Conread position:
               
279-450
               

               
Cow position:
               
chr1:89158008-89158191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 81
               

               
Conread position:
               
279-450
               

               
Cow position:
               
chr1:95072449-95072268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 81
               

               
Conread position:
               
279-453
               

               
Cow position:
               
chr1:76657960-76658144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
279-464
               

               
Cow position:
               
chr1:5155114-5155293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
81, 21
               

               
Conread position:
               
279-485
               

               
Cow position:
               
chr1:77232473-77232674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
178, 27
               

               
Conread position:
               
279-492
               

               
Cow position:
               
chr1:55819158-55818945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 68
               

               
Conread position:
               
279-525
               

               
Cow position:
               
chr1:24777877-24778132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 70
               

               
Conread position:
               
279-531
               

               
Cow position:
               
chr1:27380561-27380321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
29, 15
               

               
Conread position:
               
279-531
               

               
Cow position:
               
chr1:52912781-52913028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
31, 80
               

               
Conread position:
               
279-532
               

               
Cow position:
               
chr1:10778669-10778417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
279-532
               

               
Cow position:
               
chr1:39417998-39418276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
19, 71
               

               
Conread position:
               
279-532
               

               
Cow position:
               
chr1:44507078-44506813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
279-532
               

               
Cow position:
               
chr1:68817682-68817953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
29, 85
               

               
Conread position:
               
279-532
               

               
Cow position:
               
chr1:79164977-79165240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
136, 61
               

               
Conread position:
               
279-532
               

               
Cow position:
               
chr1:88652742-88652476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
28, 5
               

               
Conread position:
               
279-532
               

               
Cow position:
               
chr1:93499725-93499472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
279-533
               

               
Cow position:
               
chr1:1956218-1956483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
29, 67
               

               
Conread position:
               
279-533
               

               
Cow position:
               
chr1:101551569-101551306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
130, 69
               

               
Conread position:
               
279-535
               

               
Cow position:
               
chr1:37321885-37322159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
29, 71
               

               
Conread position:
               
279-535
               

               
Cow position:
               
chr1:78097032-78096779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
28, 15
               

               
Conread position:
               
279-544
               

               
Cow position:
               
chr1:48105319-48105602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
31, 76
               

               
Conread position:
               
279-544
               

               
Cow position:
               
chr1:68253702-68253423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
279-544
               

               
Cow position:
               
chr1:90868330-90868607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
17, 75
               

               
Conread position:
               
279-559
               

               
Cow position:
               
chr1:42175833-42175539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
90, 70
               

               
Conread position:
               
279-559
               

               
Cow position:
               
chr1:78838901-78838618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
30, 5
               

               
Conread position:
               
279-560
               

               
Cow position:
               
chr1:91874800-91875084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
29, 76
               

               
Conread position:
               
279-567
               

               
Cow position:
               
chr1:18936731-18937014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
29, 16
               

               
Conread position:
               
279-568
               

               
Cow position:
               
chr1:98360287-98360590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
31, 65
               

               
Conread position:
               
279-569
               

               
Cow position:
               
chr1:69678208-69678508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
29, 70
               

               
Conread position:
               
279-569
               

               
Cow position:
               
chr1:70435103-70434817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
178, 21
               

               
Conread position:
               
279-569
               

               
Cow position:
               
chr1:73960817-73960519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
31, 79
               

               
Conread position:
               
279-569
               

               
Cow position:
               
chr1:75383087-75382809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 74
               

               
Conread position:
               
279-569
               

               
Cow position:
               
chr1:84811832-84812119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
30, 71
               

               
Conread position:
               
279-569
               

               
Cow position:
               
chr1:92197559-92197278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
28, 5
               

               
Conread position:
               
279-569
               

               
Cow position:
               
chr1:98461393-98461108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 72
               

               
Conread position:
               
279-569
               

               
Cow position:
               
chr1:98551824-98551530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
29, 10
               

               
Conread position:
               
280-540
               

               
Cow position:
               
chr1:89498062-89497804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
281-568
               

               
Cow position:
               
chr1:92369849-92369547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
28, 75
               

               
Conread position:
               
282-409
               

               
Cow position:
               
chr1:33775532-33775666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
283-447
               

               
Cow position:
               
chr1:37124231-37124067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
25, 10
               

               
Conread position:
               
283-529
               

               
Cow position:
               
chr1:86682453-86682714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
14, 71
               

               
Conread position:
               
283-530
               

               
Cow position:
               
chr1:70829015-70828751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
25, 237
               

               
Conread position:
               
283-569
               

               
Cow position:
               
chr1:1991314-1991607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 15
               

               
Conread position:
               
284-434
               

               
Cow position:
               
chr1:57091077-57090930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
284-490
               

               
Cow position:
               
chr1:10716598-10716390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 57
               

               
Conread position:
               
284-535
               

               
Cow position:
               
chr1:87212032-87211788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
126, 14
               

               
Conread position:
               
284-541
               

               
Cow position:
               
chr1:86110645-86110894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
162, 14
               

               
Conread position:
               
285-414
               

               
Cow position:
               
chr1:41027175-41027047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 66
               

               
Conread position:
               
285-450
               

               
Cow position:
               
chr1:52467404-52467240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
23, 64
               

               
Conread position:
               
285-486
               

               
Cow position:
               
chr1:6752130-6752336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
23, 59
               

               
Conread position:
               
285-560
               

               
Cow position:
               
chr1:46030256-46030538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
13, 62
               

               
Conread position:
               
288-536
               

               
Cow position:
               
chr1:11770196-11770449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
293-446
               

               
Cow position:
               
chr1:8347216-8347066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
15, 51
               

               
Conread position:
               
293-569
               

               
Cow position:
               
chr1:11226155-11226428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
145, 19
               

               
Conread position:
               
294-450
               

               
Cow position:
               
chr1:98512019-98511867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
14, 56
               

               
Conread position:
               
294-476
               

               
Cow position:
               
chr1:95974492-95974309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 50
               

               
Conread position:
               
294-515
               

               
Cow position:
               
chr1:83748034-83747809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 48
               

               
Conread position:
               
294-528
               

               
Cow position:
               
chr1:96964408-96964170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
14, 56
               

               
Conread position:
               
294-529
               

               
Cow position:
               
chr1:55230068-55229833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 44
               

               
Conread position:
               
294-531
               

               
Cow position:
               
chr1:101834907-101834671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
13, 56
               

               
Conread position:
               
294-532
               

               
Cow position:
               
chr1:74084099-74084351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
294-569
               

               
Cow position:
               
chr1:64804010-64804290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
14, 56
               

               
Conread position:
               
295-442
               

               
Cow position:
               
chr1:69481857-69482005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
13, 49
               

               
Conread position:
               
295-445
               

               
Cow position:
               
chr1:84768788-84768936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
13, 41
               

               
Conread position:
               
295-447
               

               
Cow position:
               
chr1:80841737-80841594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
12, 55
               

               
Conread position:
               
295-453
               

               
Cow position:
               
chr1:100474325-100474167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 49
               

               
Conread position:
               
295-455
               

               
Cow position:
               
chr1:4581239-4581399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
12, 55
               

               
Conread position:
               
295-472
               

               
Cow position:
               
chr1:79004062-79003889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
165, 34
               

               
Conread position:
               
295-477
               

               
Cow position:
               
chr1:52662082-52662262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
13, 56
               

               
Conread position:
               
295-488
               

               
Cow position:
               
chr1:81580268-81580066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 44
               

               
Conread position:
               
295-506
               

               
Cow position:
               
chr1:45555457-45555236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 55
               

               
Conread position:
               
295-509
               

               
Cow position:
               
chr1:89350056-89349831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 55
               

               
Conread position:
               
295-516
               

               
Cow position:
               
chr1:85549987-85550216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
15, 55
               

               
Conread position:
               
295-516
               

               
Cow position:
               
chr1:92996800-92997037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
14, 49
               

               
Conread position:
               
295-527
               

               
Cow position:
               
chr1:43505620-43505375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
6, 55
               

               
Conread position:
               
295-529
               

               
Cow position:
               
chr1:47233387-47233630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
17, 55
               

               
Conread position:
               
295-530
               

               
Cow position:
               
chr1:81868638-81868878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
7, 55
               

               
Conread position:
               
295-532
               

               
Cow position:
               
chr1:4032723-4032471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
13, 55
               

               
Conread position:
               
295-532
               

               
Cow position:
               
chr1:39509967-39510204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
13, 55
               

               
Conread position:
               
295-532
               

               
Cow position:
               
chr1:55428865-55429110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
16, 55
               

               
Conread position:
               
295-532
               

               
Cow position:
               
chr1:100552066-100551816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 122
               

               
Conread position:
               
295-539
               

               
Cow position:
               
chr1:65318666-65318413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
12, 49
               

               
Conread position:
               
295-544
               

               
Cow position:
               
chr1:5135619-5135860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
12, 55
               

               
Conread position:
               
295-544
               

               
Cow position:
               
chr1:10942004-10942260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
122, 48
               

               
Conread position:
               
295-544
               

               
Cow position:
               
chr1:10964382-10964126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
122, 48
               

               
Conread position:
               
295-544
               

               
Cow position:
               
chr1:54258657-54258399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
295-544
               

               
Cow position:
               
chr1:56477683-56477426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 56
               

               
Conread position:
               
295-556
               

               
Cow position:
               
chr1:59519006-59518742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
6, 44
               

               
Conread position:
               
295-569
               

               
Cow position:
               
chr1:24132972-24133238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
13, 55
               

               
Conread position:
               
295-569
               

               
Cow position:
               
chr1:45288780-45289056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
6, 55
               

               
Conread position:
               
296-569
               

               
Cow position:
               
chr1:80336159-80336429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
12, 48
               

               
Conread position:
               
297-516
               

               
Cow position:
               
chr1:8702-8483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
160, 9
               

               
Conread position:
               
297-569
               

               
Cow position:
               
chr1:6077978-6077712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
89, 9
               

               
Conread position:
               
299-409
               

               
Cow position:
               
chr1:42537235-42537346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 52
               

               
Conread position:
               
299-535
               

               
Cow position:
               
chr1:62964352-62964121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
107, 50
               

               
Conread position:
               
300-450
               

               
Cow position:
               
chr1:61012398-61012248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
119, 50
               

               
Conread position:
               
300-509
               

               
Cow position:
               
chr1:17196542-17196760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
109, 53
               

               
Conread position:
               
300-522
               

               
Cow position:
               
chr1:8128883-8129111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
114, 49
               

               
Conread position:
               
300-544
               

               
Cow position:
               
chr1:12464579-12464832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
145, 49
               

               
Conread position:
               
300-569
               

               
Cow position:
               
chr1:37706892-37707151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
114, 40
               

               
Conread position:
               
303-532
               

               
Cow position:
               
chr1:20205109-20204872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
106, 43
               

               
Conread position:
               
303-569
               

               
Cow position:
               
chr1:91800518-91800788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
106, 33
               

               
Conread position:
               
305-498
               

               
Cow position:
               
chr1:261402-261599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
110, 41
               

               
Conread position:
               
305-545
               

               
Cow position:
               
chr1:16855619-16855860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
154, 44
               

               
Conread position:
               
306-401
               

               
Cow position:
               
chr1:19962129-19962038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
306-402
               

               
Cow position:
               
chr1:45315557-45315652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
97
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
306-413
               

               
Cow position:
               
chr1:83618525-83618635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 47
               

               
Conread position:
               
306-414
               

               
Cow position:
               
chr1:60466308-60466198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
306-435
               

               
Cow position:
               
chr1:97833786-97833663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
306-441
               

               
Cow position:
               
chr1:43286425-43286291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
306-445
               

               
Cow position:
               
chr1:64113712-64113851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
113, 43
               

               
Conread position:
               
306-446
               

               
Cow position:
               
chr1:33998835-33998699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
306-446
               

               
Cow position:
               
chr1:61560644-61560784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
102, 43
               

               
Conread position:
               
306-447
               

               
Cow position:
               
chr1:35671618-35671484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
110, 34
               

               
Conread position:
               
306-447
               

               
Cow position:
               
chr1:67688504-67688637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
306-447
               

               
Cow position:
               
chr1:78066458-78066597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
306-447
               

               
Cow position:
               
chr1:96583514-96583659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
306-450
               

               
Cow position:
               
chr1:3965912-3965778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
306-450
               

               
Cow position:
               
chr1:13637584-13637726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
102, 43
               

               
Conread position:
               
306-450
               

               
Cow position:
               
chr1:42541677-42541536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
306-450
               

               
Cow position:
               
chr1:45223660-45223518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
306-450
               

               
Cow position:
               
chr1:48206457-48206597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
108, 37
               

               
Conread position:
               
306-450
               

               
Cow position:
               
chr1:80584509-80584369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
306-450
               

               
Cow position:
               
chr1:82513274-82513417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
306-450
               

               
Cow position:
               
chr1:86912519-86912377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
306-460
               

               
Cow position:
               
chr1:81481303-81481455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
306-480
               

               
Cow position:
               
chr1:19226978-19227157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
138, 43
               

               
Conread position:
               
306-481
               

               
Cow position:
               
chr1:98576126-98575956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
306-484
               

               
Cow position:
               
chr1:22823984-22823800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
134, 37
               

               
Conread position:
               
306-489
               

               
Cow position:
               
chr1:65028613-65028418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
140, 44
               

               
Conread position:
               
306-490
               

               
Cow position:
               
chr1:7023200-7023008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
137, 43
               

               
Conread position:
               
306-490
               

               
Cow position:
               
chr1:23998856-23999033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
147, 16
               

               
Conread position:
               
306-490
               

               
Cow position:
               
chr1:45553164-45553356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
102, 40
               

               
Conread position:
               
306-490
               

               
Cow position:
               
chr1:81477790-81477981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
143, 44
               

               
Conread position:
               
306-494
               

               
Cow position:
               
chr1:6826220-6826405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
151, 34
               

               
Conread position:
               
306-497
               

               
Cow position:
               
chr1:89388423-89388224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
306-500
               

               
Cow position:
               
chr1:20104345-20104146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
96, 43
               

               
Conread position:
               
306-509
               

               
Cow position:
               
chr1:64572594-64572382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
137, 34
               

               
Conread position:
               
306-512
               

               
Cow position:
               
chr1:5023683-5023890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
155, 44
               

               
Conread position:
               
306-516
               

               
Cow position:
               
chr1:34300472-34300687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
137, 43
               

               
Conread position:
               
306-516
               

               
Cow position:
               
chr1:51531830-51531627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
179, 37
               

               
Conread position:
               
306-516
               

               
Cow position:
               
chr1:72068756-72068977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
96, 37
               

               
Conread position:
               
306-516
               

               
Cow position:
               
chr1:89448979-89448759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
105, 43
               

               
Conread position:
               
306-517
               

               
Cow position:
               
chr1:89230152-89230367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
141, 30
               

               
Conread position:
               
306-523
               

               
Cow position:
               
chr1:57297561-57297327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
97, 33
               

               
Conread position:
               
306-524
               

               
Cow position:
               
chr1:53425256-53425027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
123, 104
               

               
Conread position:
               
306-525
               

               
Cow position:
               
chr1:50930900-50931123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
151, 40
               

               
Conread position:
               
306-525
               

               
Cow position:
               
chr1:74955942-74956169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
102, 43
               

               
Conread position:
               
306-525
               

               
Cow position:
               
chr1:82936518-82936733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
138, 43
               

               
Conread position:
               
306-525
               

               
Cow position:
               
chr1:87197899-87197680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 43
               

               
Conread position:
               
306-525
               

               
Cow position:
               
chr1:91023388-91023615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
138, 43
               

               
Conread position:
               
306-529
               

               
Cow position:
               
chr1:12978761-12978529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
140, 43
               

               
Conread position:
               
306-529
               

               
Cow position:
               
chr1:22827237-22827016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
100, 95
               

               
Conread position:
               
306-529
               

               
Cow position:
               
chr1:69539770-69539546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
117, 43
               

               
Conread position:
               
306-529
               

               
Cow position:
               
chr1:71643581-71643811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
306-529
               

               
Cow position:
               
chr1:81290585-81290363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
96, 33
               

               
Conread position:
               
306-529
               

               
Cow position:
               
chr1:97761679-97761473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
306-531
               

               
Cow position:
               
chr1:69264887-69264661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
121, 37
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr1:3923721-3923949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
107, 43
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr1:21787415-21787176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
110, 43
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr1:28563490-28563723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
98, 33
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr1:33206801-33207025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
138, 73
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr1:33409546-33409782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
101, 43
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr1:36998264-36998038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
130, 43
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr1:51445965-51445725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
91, 37
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr1:52039715-52039482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 32
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr1:52753081-52753320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
101, 43
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr1:53623035-53622808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
137, 43
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr1:61735356-61735589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
151, 43
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr1:61884992-61884765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 44
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr1:68763609-68763836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
139, 28
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr1:68855244-68855016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
93, 43
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr1:68951704-68951473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
143, 24
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr1:83582854-83583088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
140, 37
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr1:89381354-89381120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
126, 43
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr1:97611581-97611807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
149, 43
               

               
Conread position:
               
306-532
               

               
Cow position:
               
chr1:97696823-97696586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
102, 33
               

               
Conread position:
               
306-534
               

               
Cow position:
               
chr1:91811856-91811631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
134, 43
               

               
Conread position:
               
306-535
               

               
Cow position:
               
chr1:41056757-41056526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 43
               

               
Conread position:
               
306-535
               

               
Cow position:
               
chr1:53398054-53397834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
146, 33
               

               
Conread position:
               
306-535
               

               
Cow position:
               
chr1:54206737-54206976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
117, 41
               

               
Conread position:
               
306-535
               

               
Cow position:
               
chr1:61005484-61005719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
129, 24
               

               
Conread position:
               
306-536
               

               
Cow position:
               
chr1:70538690-70538449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
112, 43
               

               
Conread position:
               
306-536
               

               
Cow position:
               
chr1:83072520-83072285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 43
               

               
Conread position:
               
306-536
               

               
Cow position:
               
chr1:97090405-97090169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
137, 43
               

               
Conread position:
               
306-537
               

               
Cow position:
               
chr1:89341901-89342154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
39, 71
               

               
Conread position:
               
306-540
               

               
Cow position:
               
chr1:7971491-7971257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
64, 43
               

               
Conread position:
               
306-541
               

               
Cow position:
               
chr1:20384544-20384783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
141, 43
               

               
Conread position:
               
306-541
               

               
Cow position:
               
chr1:43388973-43389210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
101, 34
               

               
Conread position:
               
306-541
               

               
Cow position:
               
chr1:61741889-61742130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
28, 42
               

               
Conread position:
               
306-541
               

               
Cow position:
               
chr1:71078881-71079119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
140, 46
               

               
Conread position:
               
306-542
               

               
Cow position:
               
chr1:25383747-25383499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
103, 43
               

               
Conread position:
               
306-542
               

               
Cow position:
               
chr1:78857250-78857484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 43
               

               
Conread position:
               
306-542
               

               
Cow position:
               
chr1:85647701-85647945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
143, 43
               

               
Conread position:
               
306-544
               

               
Cow position:
               
chr1:19482002-19482241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
129, 43
               

               
Conread position:
               
306-544
               

               
Cow position:
               
chr1:22525957-22525712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
137, 43
               

               
Conread position:
               
306-544
               

               
Cow position:
               
chr1:36932233-36931991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
134, 43
               

               
Conread position:
               
306-544
               

               
Cow position:
               
chr1:42887198-42887431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
138, 43
               

               
Conread position:
               
306-544
               

               
Cow position:
               
chr1:79844544-79844300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
146, 43
               

               
Conread position:
               
306-545
               

               
Cow position:
               
chr1:53458774-53458528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
140, 40
               

               
Conread position:
               
306-549
               

               
Cow position:
               
chr1:1981034-1981284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
137, 48
               

               
Conread position:
               
306-549
               

               
Cow position:
               
chr1:75142076-75141832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
148, 43
               

               
Conread position:
               
306-550
               

               
Cow position:
               
chr1:18780250-18780507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
59, 43
               

               
Conread position:
               
306-554
               

               
Cow position:
               
chr1:31272363-31272618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
141, 43
               

               
Conread position:
               
306-554
               

               
Cow position:
               
chr1:101632258-101632516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
137, 37
               

               
Conread position:
               
306-557
               

               
Cow position:
               
chr1:81568949-81569205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
109, 43
               

               
Conread position:
               
306-563
               

               
Cow position:
               
chr1:35162489-35162227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
139, 43
               

               
Conread position:
               
306-567
               

               
Cow position:
               
chr1:54156656-54156921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
141, 31
               

               
Conread position:
               
306-567
               

               
Cow position:
               
chr1:90621426-90621695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
24, 37
               

               
Conread position:
               
306-567
               

               
Cow position:
               
chr1:101634791-101634521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
103, 43
               

               
Conread position:
               
306-568
               

               
Cow position:
               
chr1:93528780-93528509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
24, 47
               

               
Conread position:
               
306-569
               

               
Cow position:
               
chr1:196926-197190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
151, 43
               

               
Conread position:
               
306-569
               

               
Cow position:
               
chr1:3166997-3167255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
151, 40
               

               
Conread position:
               
306-569
               

               
Cow position:
               
chr1:5597132-5597383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 44
               

               
Conread position:
               
306-569
               

               
Cow position:
               
chr1:6788204-6788472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
141, 44
               

               
Conread position:
               
306-569
               

               
Cow position:
               
chr1:7350627-7350356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
117, 43
               

               
Conread position:
               
306-569
               

               
Cow position:
               
chr1:22729135-22728865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
108, 44
               

               
Conread position:
               
306-569
               

               
Cow position:
               
chr1:29935308-29935564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
151, 43
               

               
Conread position:
               
306-569
               

               
Cow position:
               
chr1:33331015-33331271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
143, 32
               

               
Conread position:
               
306-569
               

               
Cow position:
               
chr1:41252331-41252585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
67, 43
               

               
Conread position:
               
306-569
               

               
Cow position:
               
chr1:41697134-41696872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
141, 42
               

               
Conread position:
               
306-569
               

               
Cow position:
               
chr1:61391710-61391975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
103, 32
               

               
Conread position:
               
306-569
               

               
Cow position:
               
chr1:66430370-66430114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
129, 37
               

               
Conread position:
               
306-569
               

               
Cow position:
               
chr1:78811117-78810853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
145, 43
               

               
Conread position:
               
306-569
               

               
Cow position:
               
chr1:81563824-81563550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
110, 43
               

               
Conread position:
               
306-569
               

               
Cow position:
               
chr1:81613468-81613203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
129, 43
               

               
Conread position:
               
306-569
               

               
Cow position:
               
chr1:85162468-85162730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
146, 43
               

               
Conread position:
               
306-569
               

               
Cow position:
               
chr1:89509842-89510115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
142, 43
               

               
Conread position:
               
306-569
               

               
Cow position:
               
chr1:91816692-91816956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
143, 36
               

               
Conread position:
               
306-569
               

               
Cow position:
               
chr1:93044096-93043843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
147, 43
               

               
Conread position:
               
306-569
               

               
Cow position:
               
chr1:100800432-100800173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
54, 43
               

               
Conread position:
               
307-532
               

               
Cow position:
               
chr1:20667664-20667896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
131, 36
               

               
Conread position:
               
307-532
               

               
Cow position:
               
chr1:34771425-34771659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
138, 42
               

               
Conread position:
               
307-535
               

               
Cow position:
               
chr1:3882381-3882622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
119, 42
               

               
Conread position:
               
307-541
               

               
Cow position:
               
chr1:55135914-55135671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
42, 100
               

               
Conread position:
               
307-569
               

               
Cow position:
               
chr1:101714195-101713935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
109, 29
               

               
Conread position:
               
308-407
               

               
Cow position:
               
chr1:40935690-40935788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
308-506
               

               
Cow position:
               
chr1:10633123-10632920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
131, 41
               

               
Conread position:
               
308-516
               

               
Cow position:
               
chr1:56225546-56225328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
153, 41
               

               
Conread position:
               
308-521
               

               
Cow position:
               
chr1:87440544-87440325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 12
               

               
Conread position:
               
308-532
               

               
Cow position:
               
chr1:4291241-4291004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
102, 44
               

               
Conread position:
               
308-532
               

               
Cow position:
               
chr1:4374260-4374493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
129, 42
               

               
Conread position:
               
308-532
               

               
Cow position:
               
chr1:75744939-75744706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
141, 41
               

               
Conread position:
               
308-532
               

               
Cow position:
               
chr1:93554913-93554689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
135, 35
               

               
Conread position:
               
308-552
               

               
Cow position:
               
chr1:43703486-43703231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
99, 41
               

               
Conread position:
               
308-567
               

               
Cow position:
               
chr1:68618854-68619118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
47, 32
               

               
Conread position:
               
308-568
               

               
Cow position:
               
chr1:62036879-62036619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
138, 41
               

               
Conread position:
               
308-569
               

               
Cow position:
               
chr1:52995101-52994841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
106, 41
               

               
Conread position:
               
309-449
               

               
Cow position:
               
chr1:80904843-80904706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
101, 16
               

               
Conread position:
               
309-569
               

               
Cow position:
               
chr1:74822523-74822269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
136, 40
               

               
Conread position:
               
309-569
               

               
Cow position:
               
chr1:80900196-80899925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
94, 40
               

               
Conread position:
               
309-569
               

               
Cow position:
               
chr1:102785030-102784778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
135, 45
               

               
Conread position:
               
310-532
               

               
Cow position:
               
chr1:63434731-63434960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
135, 39
               

               
Conread position:
               
310-541
               

               
Cow position:
               
chr1:74947043-74947285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
91, 5
               

               
Conread position:
               
310-569
               

               
Cow position:
               
chr1:55705174-55705436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
109, 44
               

               
Conread position:
               
310-569
               

               
Cow position:
               
chr1:71295217-71295497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
55, 33
               

               
Conread position:
               
311-449
               

               
Cow position:
               
chr1:91369935-91370069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
311-563
               

               
Cow position:
               
chr1:57575690-57575944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
127, 38
               

               
Conread position:
               
312-449
               

               
Cow position:
               
chr1:102306073-102306203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
313-555
               

               
Cow position:
               
chr1:31348365-31348621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
132, 36
               

               
Conread position:
               
315-532
               

               
Cow position:
               
chr1:82884322-82884544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
14, 35
               

               
Conread position:
               
315-569
               

               
Cow position:
               
chr1:95654643-95654898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
130, 34
               

               
Conread position:
               
316-556
               

               
Cow position:
               
chr1:11913809-11914059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
46, 19
               

               
Conread position:
               
317-502
               

               
Cow position:
               
chr1:69551415-69551608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
94, 32
               

               
Conread position:
               
319-528
               

               
Cow position:
               
chr1:89508617-89508406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
7, 32
               

               
Conread position:
               
321-516
               

               
Cow position:
               
chr1:85301481-85301280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
87, 28
               

               
Conread position:
               
322-532
               

               
Cow position:
               
chr1:54199316-54199538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
123, 27
               

               
Conread position:
               
324-551
               

               
Cow position:
               
chr1:24445567-24445798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
119, 26
               

               
Conread position:
               
325-550
               

               
Cow position:
               
chr1:426870-427090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 24
               

               
Conread position:
               
325-569
               

               
Cow position:
               
chr1:24413509-24413257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
90, 25
               

               
Conread position:
               
327-540
               

               
Cow position:
               
chr1:44155308-44155089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
28, 23
               

               
Conread position:
               
329-532
               

               
Cow position:
               
chr1:82443399-82443611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
106, 10
               

               
Conread position:
               
329-544
               

               
Cow position:
               
chr1:99136374-99136599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
119, 20
               

               
Conread position:
               
343-532
               

               
Cow position:
               
chr1:99039312-99039507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
117, 72
               

               
Conread position:
               
343-569
               

               
Cow position:
               
chr1:45535750-45535519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
102, 74
               

               
Conread position:
               
346-569
               

               
Cow position:
               
chr1:55163959-55163740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 189
               

               
Conread position:
               
347-532
               

               
Cow position:
               
chr1:22448542-22448741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
358-516
               

               
Cow position:
               
chr1:40069264-40069104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
99, 58
               

               
Conread position:
               
358-528
               

               
Cow position:
               
chr1:1403453-1403629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 52
               

               
Conread position:
               
360-569
               

               
Cow position:
               
chr1:29671495-29671706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
86, 68
               

               
Conread position:
               
364-501
               

               
Cow position:
               
chr1:70483574-70483712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 77
               

               
Conread position:
               
367-528
               

               
Cow position:
               
chr1:100812556-100812720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
82, 48
               

               
Conread position:
               
368-569
               

               
Cow position:
               
chr1:3340956-3340755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 100
               

               
Conread position:
               
370-529
               

               
Cow position:
               
chr1:12595885-12596055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
375-529
               

               
Cow position:
               
chr1:57900730-57900890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
74, 30
               

               
Conread position:
               
375-544
               

               
Cow position:
               
chr1:94404225-94404048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
74, 44
               

               
Conread position:
               
376-532
               

               
Cow position:
               
chr1:3661054-3661208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
71, 81
               

               
Conread position:
               
377-532
               

               
Cow position:
               
chr1:84910622-84910781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
70, 59
               

               
Conread position:
               
379-569
               

               
Cow position:
               
chr1:41004353-41004550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
70, 165
               
Show alignments to all cow chromosomes.