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Cow genome map

           
Conread name:
           
reru19c_i21.y1
        

               
Conread position:
               
2-323
               

               
Cow position:
               
chr1:41697298-41696980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 35
               

               
Conread position:
               
2-324
               

               
Cow position:
               
chr1:48443932-48444273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
78, 57
               

               
Conread position:
               
3-270
               

               
Cow position:
               
chr1:84103815-84104087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
119, 38
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr1:21953982-21954311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
21, 40
               

               
Conread position:
               
4-240
               

               
Cow position:
               
chr1:95049607-95049860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
76, 229
               

               
Conread position:
               
4-299
               

               
Cow position:
               
chr1:3941970-3942266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
66, 22
               

               
Conread position:
               
4-324
               

               
Cow position:
               
chr1:38277781-38278113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
25, 61
               

               
Conread position:
               
4-324
               

               
Cow position:
               
chr1:42541837-42541517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
70, 31
               

               
Conread position:
               
4-324
               

               
Cow position:
               
chr1:44507215-44506889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
21, 71
               

               
Conread position:
               
4-324
               

               
Cow position:
               
chr1:72068584-72068918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
8, 44
               

               
Conread position:
               
4-324
               

               
Cow position:
               
chr1:73457853-73458173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
121, 13
               

               
Conread position:
               
4-324
               

               
Cow position:
               
chr1:101860243-101860568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
12, 22
               

               
Conread position:
               
5-239
               

               
Cow position:
               
chr1:31630041-31630282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
46, 23
               

               
Conread position:
               
5-274
               

               
Cow position:
               
chr1:67529297-67529024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
115, 21
               

               
Conread position:
               
5-324
               

               
Cow position:
               
chr1:6972769-6972450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
45, 23
               

               
Conread position:
               
5-324
               

               
Cow position:
               
chr1:22730981-22730666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
49, 268
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr1:28471071-28470796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
6-296
               

               
Cow position:
               
chr1:88360132-88359828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
23, 82
               

               
Conread position:
               
6-324
               

               
Cow position:
               
chr1:24132819-24133138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 22
               

               
Conread position:
               
7-204
               

               
Cow position:
               
chr1:19384212-19384416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
7-323
               

               
Cow position:
               
chr1:73960935-73960627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 11
               

               
Conread position:
               
7-324
               

               
Cow position:
               
chr1:22526113-22525796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
133, 26
               

               
Conread position:
               
7-324
               

               
Cow position:
               
chr1:49317252-49317575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
8, 61
               

               
Conread position:
               
8-222
               

               
Cow position:
               
chr1:82505248-82505027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
8-323
               

               
Cow position:
               
chr1:78092281-78091957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
28, 59
               

               
Conread position:
               
8-323
               

               
Cow position:
               
chr1:78839029-78838720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 30
               

               
Conread position:
               
8-324
               

               
Cow position:
               
chr1:52052495-52052800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
54, 29
               

               
Conread position:
               
9-187
               

               
Cow position:
               
chr1:50906442-50906623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
10-316
               

               
Cow position:
               
chr1:53370323-53370010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
41, 11
               

               
Conread position:
               
12-236
               

               
Cow position:
               
chr1:11708784-11709010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
42, 75
               

               
Conread position:
               
12-321
               

               
Cow position:
               
chr1:61005321-61005632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 17
               

               
Conread position:
               
12-321
               

               
Cow position:
               
chr1:102754093-102753776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
46, 21
               

               
Conread position:
               
12-323
               

               
Cow position:
               
chr1:91023228-91023546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 52
               

               
Conread position:
               
12-324
               

               
Cow position:
               
chr1:55819269-55818982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
268, 16
               

               
Conread position:
               
13-268
               

               
Cow position:
               
chr1:67919364-67919111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
18, 5
               

               
Conread position:
               
13-288
               

               
Cow position:
               
chr1:31357274-31357556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 5
               

               
Conread position:
               
13-299
               

               
Cow position:
               
chr1:52661934-52662230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
45, 230
               

               
Conread position:
               
14-321
               

               
Cow position:
               
chr1:55428716-55429033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
14-324
               

               
Cow position:
               
chr1:68863256-68862955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
61, 72
               

               
Conread position:
               
14-324
               

               
Cow position:
               
chr1:81613622-81613310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 87
               

               
Conread position:
               
14-324
               

               
Cow position:
               
chr1:95296370-95296689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
73, 37
               

               
Conread position:
               
15-229
               

               
Cow position:
               
chr1:69378367-69378584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
108, 21
               

               
Conread position:
               
15-251
               

               
Cow position:
               
chr1:97750392-97750626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
25, 13
               

               
Conread position:
               
15-262
               

               
Cow position:
               
chr1:72092389-72092641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
9, 35
               

               
Conread position:
               
15-324
               

               
Cow position:
               
chr1:86682335-86682641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 36
               

               
Conread position:
               
16-321
               

               
Cow position:
               
chr1:81228105-81228420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
116, 7
               

               
Conread position:
               
16-324
               

               
Cow position:
               
chr1:24542341-24542661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
110, 7
               

               
Conread position:
               
17-222
               

               
Cow position:
               
chr1:20537432-20537227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
123, 17
               

               
Conread position:
               
17-230
               

               
Cow position:
               
chr1:70416530-70416746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
94, 18
               

               
Conread position:
               
17-323
               

               
Cow position:
               
chr1:47790437-47790744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
97, 55
               

               
Conread position:
               
17-324
               

               
Cow position:
               
chr1:20104501-20104189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
23, 244
               

               
Conread position:
               
17-324
               

               
Cow position:
               
chr1:57575535-57575838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
113, 10
               

               
Conread position:
               
17-324
               

               
Cow position:
               
chr1:102785173-102784879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
45, 24
               

               
Conread position:
               
18-212
               

               
Cow position:
               
chr1:84787488-84787301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
190, 17
               

               
Conread position:
               
18-321
               

               
Cow position:
               
chr1:42887041-42887343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 74
               

               
Conread position:
               
18-324
               

               
Cow position:
               
chr1:92963603-92963316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
222, 10
               

               
Conread position:
               
19-217
               

               
Cow position:
               
chr1:40078025-40077821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
39, 29
               

               
Conread position:
               
19-321
               

               
Cow position:
               
chr1:65318805-65318500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
9, 23
               

               
Conread position:
               
19-323
               

               
Cow position:
               
chr1:724973-724659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 65
               

               
Conread position:
               
20-324
               

               
Cow position:
               
chr1:101835049-101834744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
34, 57
               

               
Conread position:
               
21-244
               

               
Cow position:
               
chr1:100573402-100573627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
106, 27
               

               
Conread position:
               
21-269
               

               
Cow position:
               
chr1:87094977-87095239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 12
               

               
Conread position:
               
21-304
               

               
Cow position:
               
chr1:50432249-50432548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 12
               

               
Conread position:
               
21-324
               

               
Cow position:
               
chr1:54206596-54206898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 8
               

               
Conread position:
               
22-276
               

               
Cow position:
               
chr1:72422175-72422436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
29, 40
               

               
Conread position:
               
22-324
               

               
Cow position:
               
chr1:16766858-16767162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 18
               

               
Conread position:
               
23-264
               

               
Cow position:
               
chr1:24530722-24530482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 12
               

               
Conread position:
               
23-294
               

               
Cow position:
               
chr1:70175320-70175592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
39, 18
               

               
Conread position:
               
23-321
               

               
Cow position:
               
chr1:68845273-68845561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
11, 68
               

               
Conread position:
               
23-321
               

               
Cow position:
               
chr1:95177158-95176857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
46, 115
               

               
Conread position:
               
23-322
               

               
Cow position:
               
chr1:196776-197087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 15
               

               
Conread position:
               
23-324
               

               
Cow position:
               
chr1:36998411-36998116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
31, 8
               

               
Conread position:
               
23-324
               

               
Cow position:
               
chr1:42175969-42175645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 246
               

               
Conread position:
               
23-324
               

               
Cow position:
               
chr1:46031187-46030880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
19, 289
               

               
Conread position:
               
23-324
               

               
Cow position:
               
chr1:55357063-55357364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
31, 58
               

               
Conread position:
               
24-288
               

               
Cow position:
               
chr1:81391154-81390872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
34, 67
               

               
Conread position:
               
24-321
               

               
Cow position:
               
chr1:10941876-10942174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
116, 17
               

               
Conread position:
               
24-321
               

               
Cow position:
               
chr1:10964510-10964212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
111, 17
               

               
Conread position:
               
24-321
               

               
Cow position:
               
chr1:22824137-22823827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
28, 40
               

               
Conread position:
               
24-324
               

               
Cow position:
               
chr1:42397974-42398273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
87, 17
               

               
Conread position:
               
24-324
               

               
Cow position:
               
chr1:81290726-81290428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 23
               

               
Conread position:
               
25-230
               

               
Cow position:
               
chr1:40303772-40303565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
26, 11
               

               
Conread position:
               
25-254
               

               
Cow position:
               
chr1:66752411-66752639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
115, 23
               

               
Conread position:
               
25-324
               

               
Cow position:
               
chr1:628190-627882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
97, 23
               

               
Conread position:
               
26-187
               

               
Cow position:
               
chr1:39095711-39095545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
26, 59
               

               
Conread position:
               
26-205
               

               
Cow position:
               
chr1:51968763-51968576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
54, 118
               

               
Conread position:
               
26-263
               

               
Cow position:
               
chr1:49334158-49334411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
54, 33
               

               
Conread position:
               
26-296
               

               
Cow position:
               
chr1:92590406-92590142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
54, 26
               

               
Conread position:
               
26-299
               

               
Cow position:
               
chr1:73545681-73545963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 62
               

               
Conread position:
               
26-304
               

               
Cow position:
               
chr1:28563339-28563633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
37, 182
               

               
Conread position:
               
26-321
               

               
Cow position:
               
chr1:76740451-76740755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
85, 22
               

               
Conread position:
               
26-324
               

               
Cow position:
               
chr1:11172594-11172296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
26, 61
               

               
Conread position:
               
26-324
               

               
Cow position:
               
chr1:92996665-92996975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
94, 22
               

               
Conread position:
               
27-247
               

               
Cow position:
               
chr1:95156744-95156967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
96, 53
               

               
Conread position:
               
27-319
               

               
Cow position:
               
chr1:10633264-10632974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
50, 58
               

               
Conread position:
               
27-323
               

               
Cow position:
               
chr1:77880515-77880814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 71
               

               
Conread position:
               
27-323
               

               
Cow position:
               
chr1:98360176-98360476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
24, 70
               

               
Conread position:
               
28-316
               

               
Cow position:
               
chr1:30983270-30983562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
47, 31
               

               
Conread position:
               
28-323
               

               
Cow position:
               
chr1:74751409-74751713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
89, 20
               

               
Conread position:
               
28-324
               

               
Cow position:
               
chr1:96472636-96472366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 57
               

               
Conread position:
               
29-254
               

               
Cow position:
               
chr1:8788511-8788281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
72, 8
               

               
Conread position:
               
29-304
               

               
Cow position:
               
chr1:78066325-78066599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
109, 19
               

               
Conread position:
               
29-322
               

               
Cow position:
               
chr1:15902704-15902414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 28
               

               
Conread position:
               
30-278
               

               
Cow position:
               
chr1:81515462-81515200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
31, 58
               

               
Conread position:
               
30-323
               

               
Cow position:
               
chr1:48581349-48581053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
92, 54
               

               
Conread position:
               
30-324
               

               
Cow position:
               
chr1:47886260-47886565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
30-324
               

               
Cow position:
               
chr1:70422523-70422226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
86, 45
               

               
Conread position:
               
31-235
               

               
Cow position:
               
chr1:12595353-12595567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 60
               

               
Conread position:
               
31-274
               

               
Cow position:
               
chr1:98912229-98911979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
21, 56
               

               
Conread position:
               
31-323
               

               
Cow position:
               
chr1:102305926-102306222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
21, 56
               

               
Conread position:
               
31-324
               

               
Cow position:
               
chr1:37321794-37322081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 17
               

               
Conread position:
               
31-324
               

               
Cow position:
               
chr1:62519583-62519279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
84, 41
               

               
Conread position:
               
31-324
               

               
Cow position:
               
chr1:70538826-70538528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 54
               

               
Conread position:
               
31-324
               

               
Cow position:
               
chr1:78079938-78079641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
96, 16
               

               
Conread position:
               
32-224
               

               
Cow position:
               
chr1:28354761-28354577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
32-312
               

               
Cow position:
               
chr1:46143248-46143530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 55
               

               
Conread position:
               
32-324
               

               
Cow position:
               
chr1:99609582-99609289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
27, 9
               

               
Conread position:
               
33-265
               

               
Cow position:
               
chr1:100823257-100823016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 8
               

               
Conread position:
               
33-266
               

               
Cow position:
               
chr1:93590370-93590608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
21, 51
               

               
Conread position:
               
33-288
               

               
Cow position:
               
chr1:21955158-21955416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
89, 15
               

               
Conread position:
               
33-320
               

               
Cow position:
               
chr1:35671751-35671466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
103, 39
               

               
Conread position:
               
33-321
               

               
Cow position:
               
chr1:64803883-64804184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
89, 15
               

               
Conread position:
               
34-243
               

               
Cow position:
               
chr1:32014405-32014199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
102, 38
               

               
Conread position:
               
34-262
               

               
Cow position:
               
chr1:41137934-41138164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
106, 34
               

               
Conread position:
               
35-233
               

               
Cow position:
               
chr1:63461091-63460889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
27, 35
               

               
Conread position:
               
35-259
               

               
Cow position:
               
chr1:40212132-40212347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
38, 52
               

               
Conread position:
               
35-304
               

               
Cow position:
               
chr1:61741746-61742030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
19, 52
               

               
Conread position:
               
36-202
               

               
Cow position:
               
chr1:30028020-30028190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 41
               

               
Conread position:
               
36-292
               

               
Cow position:
               
chr1:19516184-19516439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
90, 12
               

               
Conread position:
               
36-321
               

               
Cow position:
               
chr1:3923592-3923871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
26, 41
               

               
Conread position:
               
36-324
               

               
Cow position:
               
chr1:64572731-64572434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 279
               

               
Conread position:
               
37-213
               

               
Cow position:
               
chr1:53474362-53474188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 49
               

               
Conread position:
               
37-324
               

               
Cow position:
               
chr1:31272233-31272520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
40, 52
               

               
Conread position:
               
37-324
               

               
Cow position:
               
chr1:34160046-34159758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
24, 53
               

               
Conread position:
               
38-278
               

               
Cow position:
               
chr1:41027283-41027042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 14
               

               
Conread position:
               
38-321
               

               
Cow position:
               
chr1:45019599-45019884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
111, 13
               

               
Conread position:
               
38-322
               

               
Cow position:
               
chr1:86056868-86057144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
98, 34
               

               
Conread position:
               
39-324
               

               
Cow position:
               
chr1:39224730-39225006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
225, 41
               

               
Conread position:
               
41-212
               

               
Cow position:
               
chr1:22828367-22828538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
99, 7
               

               
Conread position:
               
41-236
               

               
Cow position:
               
chr1:13828376-13828578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
22, 41
               

               
Conread position:
               
41-254
               

               
Cow position:
               
chr1:6381985-6381762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
8, 135
               

               
Conread position:
               
41-264
               

               
Cow position:
               
chr1:49980915-49980690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
86, 31
               

               
Conread position:
               
41-265
               

               
Cow position:
               
chr1:13576674-13576907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
41-272
               

               
Cow position:
               
chr1:73721572-73721331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
15, 40
               

               
Conread position:
               
41-283
               

               
Cow position:
               
chr1:82538137-82537895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
32, 45
               

               
Conread position:
               
41-292
               

               
Cow position:
               
chr1:15547675-15547423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
41-321
               

               
Cow position:
               
chr1:8825-8540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
74, 31
               

               
Conread position:
               
41-322
               

               
Cow position:
               
chr1:53623162-53622883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 37
               

               
Conread position:
               
41-323
               

               
Cow position:
               
chr1:19466242-19465978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
41-323
               

               
Cow position:
               
chr1:75250324-75250033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
20, 36
               

               
Conread position:
               
41-324
               

               
Cow position:
               
chr1:6304671-6304942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
215, 7
               

               
Conread position:
               
41-324
               

               
Cow position:
               
chr1:15334095-15333805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
99, 39
               

               
Conread position:
               
41-324
               

               
Cow position:
               
chr1:54156512-54156811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
15, 177
               

               
Conread position:
               
41-324
               

               
Cow position:
               
chr1:96304768-96305060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
94, 7
               

               
Conread position:
               
42-296
               

               
Cow position:
               
chr1:97717370-97717629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
97, 22
               

               
Conread position:
               
42-324
               

               
Cow position:
               
chr1:90621297-90621587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
31, 44
               

               
Conread position:
               
43-206
               

               
Cow position:
               
chr1:53457020-53456849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
30, 44
               

               
Conread position:
               
44-206
               

               
Cow position:
               
chr1:92363466-92363625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
95, 28
               

               
Conread position:
               
44-257
               

               
Cow position:
               
chr1:759208-759431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
34, 28
               

               
Conread position:
               
44-276
               

               
Cow position:
               
chr1:85339584-85339352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
29, 42
               

               
Conread position:
               
44-321
               

               
Cow position:
               
chr1:25281459-25281737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
36, 48
               

               
Conread position:
               
44-324
               

               
Cow position:
               
chr1:38754126-38753841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 44
               

               
Conread position:
               
44-324
               

               
Cow position:
               
chr1:82337576-82337860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
18, 37
               

               
Conread position:
               
46-288
               

               
Cow position:
               
chr1:22035812-22035565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
46-324
               

               
Cow position:
               
chr1:35162620-35162330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
34, 13
               

               
Conread position:
               
47-264
               

               
Cow position:
               
chr1:20871353-20871579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 15
               

               
Conread position:
               
47-317
               

               
Cow position:
               
chr1:6394758-6394486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
74, 25
               

               
Conread position:
               
47-324
               

               
Cow position:
               
chr1:95057246-95056976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
77, 35
               

               
Conread position:
               
48-217
               

               
Cow position:
               
chr1:100800569-100800742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
73, 24
               

               
Conread position:
               
48-245
               

               
Cow position:
               
chr1:43499110-43499297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
48-273
               

               
Cow position:
               
chr1:100852917-100852682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
10, 213
               

               
Conread position:
               
48-304
               

               
Cow position:
               
chr1:101507564-101507297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 114
               

               
Conread position:
               
48-316
               

               
Cow position:
               
chr1:186066-186348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
15, 155
               

               
Conread position:
               
48-322
               

               
Cow position:
               
chr1:64678894-64678618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
32, 84
               

               
Conread position:
               
48-323
               

               
Cow position:
               
chr1:1980907-1981193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
70, 241
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr1:13547771-13548063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 6
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr1:31607680-31607974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
34, 119
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr1:75745063-75744781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
79, 32
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr1:99642171-99642445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
69, 27
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr1:102266068-102266347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
27, 11
               

               
Conread position:
               
49-229
               

               
Cow position:
               
chr1:102730558-102730747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
67, 23
               

               
Conread position:
               
50-301
               

               
Cow position:
               
chr1:92197654-92197395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
66, 9
               

               
Conread position:
               
50-324
               

               
Cow position:
               
chr1:53374627-53374352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
61, 9
               

               
Conread position:
               
50-324
               

               
Cow position:
               
chr1:66898294-66898576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
8, 24
               

               
Conread position:
               
50-324
               

               
Cow position:
               
chr1:72034728-72035004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
51-249
               

               
Cow position:
               
chr1:99604992-99605192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
85, 31
               

               
Conread position:
               
52-227
               

               
Cow position:
               
chr1:76474363-76474540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
48, 30
               

               
Conread position:
               
52-246
               

               
Cow position:
               
chr1:7966043-7965851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
78, 20
               

               
Conread position:
               
52-304
               

               
Cow position:
               
chr1:5597016-5597270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
10, 18
               

               
Conread position:
               
52-322
               

               
Cow position:
               
chr1:26934072-26934344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
10, 18
               

               
Conread position:
               
52-323
               

               
Cow position:
               
chr1:21578006-21577731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 32
               

               
Conread position:
               
52-324
               

               
Cow position:
               
chr1:8128783-8129050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 20
               

               
Conread position:
               
52-324
               

               
Cow position:
               
chr1:31934700-31934433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
7, 16
               

               
Conread position:
               
52-324
               

               
Cow position:
               
chr1:54478512-54478245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
10, 25
               

               
Conread position:
               
52-324
               

               
Cow position:
               
chr1:56477781-56477508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
220, 21
               

               
Conread position:
               
54-321
               

               
Cow position:
               
chr1:74955836-74956097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
55-324
               

               
Cow position:
               
chr1:79640096-79640370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 17
               

               
Conread position:
               
56-221
               

               
Cow position:
               
chr1:73494403-73494573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
58-323
               

               
Cow position:
               
chr1:65028709-65028453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 17
               

               
Conread position:
               
59-195
               

               
Cow position:
               
chr1:81615853-81615703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
59-231
               

               
Cow position:
               
chr1:42775109-42774924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
59-240
               

               
Cow position:
               
chr1:4512173-4511987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
23, 73
               

               
Conread position:
               
59-250
               

               
Cow position:
               
chr1:14205961-14206155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 64
               

               
Conread position:
               
59-270
               

               
Cow position:
               
chr1:45576123-45575909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
21, 61
               

               
Conread position:
               
59-295
               

               
Cow position:
               
chr1:3966032-3965788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
18, 152
               

               
Conread position:
               
59-322
               

               
Cow position:
               
chr1:1956135-1956411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
19, 121
               

               
Conread position:
               
59-322
               

               
Cow position:
               
chr1:42873774-42874030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
59-322
               

               
Cow position:
               
chr1:85029139-85028875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
21, 79
               

               
Conread position:
               
59-323
               

               
Cow position:
               
chr1:100449989-100450259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
21, 48
               

               
Conread position:
               
59-324
               

               
Cow position:
               
chr1:7971607-7971336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
21, 218
               

               
Conread position:
               
59-324
               

               
Cow position:
               
chr1:33330899-33331167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
21, 147
               

               
Conread position:
               
59-324
               

               
Cow position:
               
chr1:56225669-56225387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 264
               

               
Conread position:
               
59-324
               

               
Cow position:
               
chr1:69694804-69695071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 159
               

               
Conread position:
               
59-324
               

               
Cow position:
               
chr1:98031107-98030835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 25
               

               
Conread position:
               
60-246
               

               
Cow position:
               
chr1:50329681-50329493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
13, 44
               

               
Conread position:
               
60-293
               

               
Cow position:
               
chr1:97611471-97611710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
20, 53
               

               
Conread position:
               
60-311
               

               
Cow position:
               
chr1:29935189-29935455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
20, 189
               

               
Conread position:
               
61-195
               

               
Cow position:
               
chr1:54645624-54645476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
61-244
               

               
Cow position:
               
chr1:87220643-87220460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
18, 71
               

               
Conread position:
               
61-296
               

               
Cow position:
               
chr1:43286530-43286291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
19, 78
               

               
Conread position:
               
61-312
               

               
Cow position:
               
chr1:96599103-96599348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
22, 55
               

               
Conread position:
               
61-317
               

               
Cow position:
               
chr1:53521106-53520840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
19, 218
               

               
Conread position:
               
61-324
               

               
Cow position:
               
chr1:39417930-39418200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
19, 50
               

               
Conread position:
               
61-324
               

               
Cow position:
               
chr1:71295103-71295385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
19, 57
               

               
Conread position:
               
61-324
               

               
Cow position:
               
chr1:82880832-82880565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
56, 30
               

               
Conread position:
               
61-324
               

               
Cow position:
               
chr1:101632151-101632418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
19, 249
               

               
Conread position:
               
62-207
               

               
Cow position:
               
chr1:77810574-77810722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 23
               

               
Conread position:
               
62-227
               

               
Cow position:
               
chr1:81638728-81638565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
78, 20
               

               
Conread position:
               
62-234
               

               
Cow position:
               
chr1:71636139-71636315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
11, 24
               

               
Conread position:
               
62-269
               

               
Cow position:
               
chr1:102768364-102768155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
53, 18
               

               
Conread position:
               
62-274
               

               
Cow position:
               
chr1:89158519-89158730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
64, 20
               

               
Conread position:
               
62-321
               

               
Cow position:
               
chr1:11226063-11226322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
24, 13
               

               
Conread position:
               
62-321
               

               
Cow position:
               
chr1:53452710-53452466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
62-322
               

               
Cow position:
               
chr1:82936416-82936669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 23
               

               
Conread position:
               
62-324
               

               
Cow position:
               
chr1:7748405-7748141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 22
               

               
Conread position:
               
62-324
               

               
Cow position:
               
chr1:34856436-34856710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 24
               

               
Conread position:
               
62-324
               

               
Cow position:
               
chr1:51417953-51417693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 24
               

               
Conread position:
               
62-324
               

               
Cow position:
               
chr1:86110556-86110810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
62-324
               

               
Cow position:
               
chr1:95499307-95499573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
63-278
               

               
Cow position:
               
chr1:83606257-83606484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 203
               

               
Conread position:
               
63-321
               

               
Cow position:
               
chr1:11729356-11729105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
77, 17
               

               
Conread position:
               
63-324
               

               
Cow position:
               
chr1:61012494-61012230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
12, 23
               

               
Conread position:
               
65-311
               

               
Cow position:
               
chr1:87198004-87197747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 19
               

               
Conread position:
               
67-324
               

               
Cow position:
               
chr1:24406719-24406973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
16, 32
               

               
Conread position:
               
67-324
               

               
Cow position:
               
chr1:49433079-49433340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
57, 17
               

               
Conread position:
               
68-226
               

               
Cow position:
               
chr1:32035531-32035692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
59, 12
               

               
Conread position:
               
68-293
               

               
Cow position:
               
chr1:99322387-99322619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
72, 13
               

               
Conread position:
               
68-321
               

               
Cow position:
               
chr1:85866319-85866066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
162, 16
               

               
Conread position:
               
68-324
               

               
Cow position:
               
chr1:4291335-4291081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
145, 18
               

               
Conread position:
               
69-299
               

               
Cow position:
               
chr1:79146634-79146877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
17, 126
               

               
Conread position:
               
69-320
               

               
Cow position:
               
chr1:79135459-79135203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
42, 15
               

               
Conread position:
               
69-324
               

               
Cow position:
               
chr1:12464486-12464745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
71-323
               

               
Cow position:
               
chr1:89449076-89448819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 13
               

               
Conread position:
               
72-190
               

               
Cow position:
               
chr1:80423555-80423678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
5, 11
               

               
Conread position:
               
72-251
               

               
Cow position:
               
chr1:51860387-51860568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
68, 12
               

               
Conread position:
               
72-265
               

               
Cow position:
               
chr1:38706676-38706875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 8
               

               
Conread position:
               
72-276
               

               
Cow position:
               
chr1:81858724-81858934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
47, 12
               

               
Conread position:
               
72-277
               

               
Cow position:
               
chr1:79630743-79630936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
55, 12
               

               
Conread position:
               
72-280
               

               
Cow position:
               
chr1:95835618-95835833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
47, 12
               

               
Conread position:
               
72-293
               

               
Cow position:
               
chr1:500353-500123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
34, 12
               

               
Conread position:
               
72-296
               

               
Cow position:
               
chr1:81481208-81481437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 12
               

               
Conread position:
               
72-298
               

               
Cow position:
               
chr1:76612955-76613191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
54, 12
               

               
Conread position:
               
72-304
               

               
Cow position:
               
chr1:48618070-48618300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
68, 12
               

               
Conread position:
               
72-305
               

               
Cow position:
               
chr1:79004153-79003912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
44, 14
               

               
Conread position:
               
72-309
               

               
Cow position:
               
chr1:74929531-74929783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
72-312
               

               
Cow position:
               
chr1:52139451-52139700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
58, 12
               

               
Conread position:
               
72-319
               

               
Cow position:
               
chr1:93499796-93499550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
5, 11
               

               
Conread position:
               
72-320
               

               
Cow position:
               
chr1:27463305-27463055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
5, 11
               

               
Conread position:
               
72-321
               

               
Cow position:
               
chr1:13637488-13637741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 11
               

               
Conread position:
               
72-321
               

               
Cow position:
               
chr1:61885089-61884837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 12
               

               
Conread position:
               
72-323
               

               
Cow position:
               
chr1:635507-635763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
72-323
               

               
Cow position:
               
chr1:54258746-54258486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
72-324
               

               
Cow position:
               
chr1:484286-484545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
72-324
               

               
Cow position:
               
chr1:17875536-17875790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
69, 12
               

               
Conread position:
               
72-324
               

               
Cow position:
               
chr1:47658525-47658268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
72-324
               

               
Cow position:
               
chr1:61391618-61391868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
68, 12
               

               
Conread position:
               
72-324
               

               
Cow position:
               
chr1:69551302-69551565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
69, 12
               

               
Conread position:
               
72-324
               

               
Cow position:
               
chr1:71665757-71666012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
73-254
               

               
Cow position:
               
chr1:61011351-61011171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
67, 17
               

               
Conread position:
               
73-268
               

               
Cow position:
               
chr1:8287454-8287654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
47, 17
               

               
Conread position:
               
73-269
               

               
Cow position:
               
chr1:31256055-31256248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
65, 7
               

               
Conread position:
               
73-321
               

               
Cow position:
               
chr1:56225958-56225711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
73-324
               

               
Cow position:
               
chr1:42482375-42482124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 11
               

               
Conread position:
               
73-324
               

               
Cow position:
               
chr1:91065981-91066232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
64, 11
               

               
Conread position:
               
74-222
               

               
Cow position:
               
chr1:86383637-86383784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
66, 16
               

               
Conread position:
               
74-304
               

               
Cow position:
               
chr1:62235281-62235508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
100, 51
               

               
Conread position:
               
74-317
               

               
Cow position:
               
chr1:69264976-69264740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
74-323
               

               
Cow position:
               
chr1:50992107-50991856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
17, 35
               

               
Conread position:
               
74-324
               

               
Cow position:
               
chr1:20667572-20667821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
5, 11
               

               
Conread position:
               
74-324
               

               
Cow position:
               
chr1:45670799-45670559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
64, 10
               

               
Conread position:
               
74-324
               

               
Cow position:
               
chr1:89341807-89342074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
53, 17
               

               
Conread position:
               
76-316
               

               
Cow position:
               
chr1:70829073-70828828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
64, 97
               

               
Conread position:
               
78-324
               

               
Cow position:
               
chr1:12222433-12222683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
32, 6
               

               
Conread position:
               
79-229
               

               
Cow position:
               
chr1:89835880-89835732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
141, 5
               

               
Conread position:
               
79-323
               

               
Cow position:
               
chr1:33409453-33409703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
32, 5
               

               
Conread position:
               
80-274
               

               
Cow position:
               
chr1:95683208-95683409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
5, 18
               

               
Conread position:
               
80-321
               

               
Cow position:
               
chr1:68845001-68845232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
9, 178
               

               
Conread position:
               
80-324
               

               
Cow position:
               
chr1:101916339-101916093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
23, 185
               

               
Conread position:
               
81-266
               

               
Cow position:
               
chr1:101267833-101268023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 11
               

               
Conread position:
               
81-323
               

               
Cow position:
               
chr1:34686340-34686112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
83-296
               

               
Cow position:
               
chr1:22827313-22827102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
114, 40
               

               
Conread position:
               
84-206
               

               
Cow position:
               
chr1:10470588-10470464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
84-206
               

               
Cow position:
               
chr1:79169984-79170115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
84-212
               

               
Cow position:
               
chr1:91743297-91743432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
84-238
               

               
Cow position:
               
chr1:4329743-4329894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
49, 37
               

               
Conread position:
               
84-238
               

               
Cow position:
               
chr1:70483169-70483328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
84-238
               

               
Cow position:
               
chr1:71945913-71946078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
84-241
               

               
Cow position:
               
chr1:30949151-30948995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
56, 26
               

               
Conread position:
               
84-251
               

               
Cow position:
               
chr1:22192936-22192762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
84-253
               

               
Cow position:
               
chr1:101439321-101439491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
41, 82
               

               
Conread position:
               
84-254
               

               
Cow position:
               
chr1:68688745-68688573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
84-260
               

               
Cow position:
               
chr1:45315465-45315652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
84-265
               

               
Cow position:
               
chr1:53398139-53397954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
84-268
               

               
Cow position:
               
chr1:15103050-15102865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
30, 109
               

               
Conread position:
               
84-268
               

               
Cow position:
               
chr1:55753053-55753239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
56, 147
               

               
Conread position:
               
84-269
               

               
Cow position:
               
chr1:83024999-83025190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
84-271
               

               
Cow position:
               
chr1:55230139-55229949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
84-273
               

               
Cow position:
               
chr1:6731345-6731151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
41, 167
               

               
Conread position:
               
84-276
               

               
Cow position:
               
chr1:83093029-83092843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 115
               

               
Conread position:
               
84-282
               

               
Cow position:
               
chr1:62997967-62997758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
27, 126
               

               
Conread position:
               
84-282
               

               
Cow position:
               
chr1:85772172-85771970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
18, 197
               

               
Conread position:
               
84-286
               

               
Cow position:
               
chr1:33998915-33998714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
189, 51
               

               
Conread position:
               
84-290
               

               
Cow position:
               
chr1:97833863-97833663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
191, 40
               

               
Conread position:
               
84-296
               

               
Cow position:
               
chr1:7740108-7739893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
54, 113
               

               
Conread position:
               
84-299
               

               
Cow position:
               
chr1:64113634-64113850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
78, 37
               

               
Conread position:
               
84-304
               

               
Cow position:
               
chr1:48206371-48206596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
42, 120
               

               
Conread position:
               
84-310
               

               
Cow position:
               
chr1:54267774-54267999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
42, 102
               

               
Conread position:
               
84-316
               

               
Cow position:
               
chr1:92032431-92032673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
54, 185
               

               
Conread position:
               
84-317
               

               
Cow position:
               
chr1:89157964-89158202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
56, 24
               

               
Conread position:
               
84-321
               

               
Cow position:
               
chr1:59519077-59518842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
59, 122
               

               
Conread position:
               
84-321
               

               
Cow position:
               
chr1:91811948-91811705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
46, 134
               

               
Conread position:
               
84-321
               

               
Cow position:
               
chr1:97090484-97090249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
36, 16
               

               
Conread position:
               
84-322
               

               
Cow position:
               
chr1:6854150-6854383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
187, 27
               

               
Conread position:
               
84-322
               

               
Cow position:
               
chr1:20950883-20950644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
32, 163
               

               
Conread position:
               
84-322
               

               
Cow position:
               
chr1:23186636-23186872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
56, 111
               

               
Conread position:
               
84-322
               

               
Cow position:
               
chr1:70435152-70434920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
183, 42
               

               
Conread position:
               
84-322
               

               
Cow position:
               
chr1:97954317-97954542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
84-323
               

               
Cow position:
               
chr1:10778724-10778488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
56, 26
               

               
Conread position:
               
84-323
               

               
Cow position:
               
chr1:24534095-24534332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
56, 37
               

               
Conread position:
               
84-323
               

               
Cow position:
               
chr1:31794840-31795083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 127
               

               
Conread position:
               
84-323
               

               
Cow position:
               
chr1:40600192-40599965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
182, 37
               

               
Conread position:
               
84-323
               

               
Cow position:
               
chr1:41182002-41181767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
43, 55
               

               
Conread position:
               
84-323
               

               
Cow position:
               
chr1:51446049-51445802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
50, 151
               

               
Conread position:
               
84-323
               

               
Cow position:
               
chr1:52467454-52467223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
105, 45
               

               
Conread position:
               
84-323
               

               
Cow position:
               
chr1:68618769-68619011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
32, 66
               

               
Conread position:
               
84-323
               

               
Cow position:
               
chr1:69539851-69539619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
172, 0
               

               
Conread position:
               
84-323
               

               
Cow position:
               
chr1:71078796-71079036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 189
               

               
Conread position:
               
84-323
               

               
Cow position:
               
chr1:84811775-84812022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 221
               

               
Conread position:
               
84-323
               

               
Cow position:
               
chr1:98583914-98583679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
56, 27
               

               
Conread position:
               
84-323
               

               
Cow position:
               
chr1:100552132-100551891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
115, 51
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr1:6941632-6941384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
38, 195
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr1:6959045-6958797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
38, 195
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr1:7752548-7752307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
26, 182
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr1:17196459-17196709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
39, 232
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr1:37124293-37124046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
54, 27
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr1:42256337-42256582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
45, 227
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr1:43388888-43389129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 122
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr1:43505690-43505445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 27
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr1:43855455-43855222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
54, 43
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr1:45555532-45555285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 69
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr1:49824899-49825149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
43, 232
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr1:58754632-58754875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 17
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr1:64302083-64302327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
107, 226
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr1:68817634-68817878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 123
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr1:68826755-68826984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
181, 26
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr1:79660232-79660481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
27, 229
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr1:81568863-81569110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
32, 212
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr1:89509762-89510002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 53
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr1:98060225-98059970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
56, 236
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr1:100474405-100474152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
27, 228
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr1:100762240-100761996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 133
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr1:101634865-101634625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
184, 22
               

               
Conread position:
               
85-209
               

               
Cow position:
               
chr1:46354275-46354404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
85-212
               

               
Cow position:
               
chr1:93235767-93235898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 70
               

               
Conread position:
               
85-225
               

               
Cow position:
               
chr1:62469223-62469080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
51, 118
               

               
Conread position:
               
85-234
               

               
Cow position:
               
chr1:50585711-50585868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
85-235
               

               
Cow position:
               
chr1:524971-524817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
85-241
               

               
Cow position:
               
chr1:55685813-55685975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
85-269
               

               
Cow position:
               
chr1:52487813-52488006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
37, 80
               

               
Conread position:
               
85-321
               

               
Cow position:
               
chr1:41056845-41056600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 229
               

               
Conread position:
               
85-321
               

               
Cow position:
               
chr1:69678159-69678405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
40, 147
               

               
Conread position:
               
85-322
               

               
Cow position:
               
chr1:68855331-68855085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
40, 229
               

               
Conread position:
               
85-323
               

               
Cow position:
               
chr1:25383834-25383585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 159
               

               
Conread position:
               
85-323
               

               
Cow position:
               
chr1:79164917-79165163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
42, 66
               

               
Conread position:
               
85-324
               

               
Cow position:
               
chr1:78811203-78810960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
42, 163
               

               
Conread position:
               
85-324
               

               
Cow position:
               
chr1:90904592-90904833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
41, 174
               

               
Conread position:
               
85-324
               

               
Cow position:
               
chr1:96276888-96277134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
30, 120
               

               
Conread position:
               
86-209
               

               
Cow position:
               
chr1:72812013-72811896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
86-277
               

               
Cow position:
               
chr1:67654158-67654353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
86-303
               

               
Cow position:
               
chr1:97303089-97303304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 78
               

               
Conread position:
               
86-321
               

               
Cow position:
               
chr1:81477699-81477948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
25, 239
               

               
Conread position:
               
86-322
               

               
Cow position:
               
chr1:78097090-78096847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 227
               

               
Conread position:
               
86-322
               

               
Cow position:
               
chr1:83072606-83072360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
41, 232
               

               
Conread position:
               
86-324
               

               
Cow position:
               
chr1:62964432-62964198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
40, 177
               

               
Conread position:
               
86-324
               

               
Cow position:
               
chr1:101714280-101714035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
29, 113
               

               
Conread position:
               
87-202
               

               
Cow position:
               
chr1:21957391-21957505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 50
               

               
Conread position:
               
87-268
               

               
Cow position:
               
chr1:27959401-27959574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
87-322
               

               
Cow position:
               
chr1:89388506-89388260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 230
               

               
Conread position:
               
87-324
               

               
Cow position:
               
chr1:51044145-51044385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
28, 85
               

               
Conread position:
               
87-324
               

               
Cow position:
               
chr1:88913483-88913239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 109
               

               
Conread position:
               
88-304
               

               
Cow position:
               
chr1:80584590-80584370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
27, 184
               

               
Conread position:
               
89-323
               

               
Cow position:
               
chr1:55705083-55705328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
37, 126
               

               
Conread position:
               
89-324
               

               
Cow position:
               
chr1:7023280-7023041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 219
               

               
Conread position:
               
89-324
               

               
Cow position:
               
chr1:56618495-56618730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 93
               

               
Conread position:
               
90-242
               

               
Cow position:
               
chr1:69185579-69185720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
90-255
               

               
Cow position:
               
chr1:22461079-22461249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
26, 72
               

               
Conread position:
               
90-288
               

               
Cow position:
               
chr1:2462536-2462339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
35, 120
               

               
Conread position:
               
90-322
               

               
Cow position:
               
chr1:56229390-56229168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
90-323
               

               
Cow position:
               
chr1:50930820-50931054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
36, 114
               

               
Conread position:
               
90-324
               

               
Cow position:
               
chr1:25735031-25734789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
37, 112
               

               
Conread position:
               
90-324
               

               
Cow position:
               
chr1:57297645-57297397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
52, 7
               

               
Conread position:
               
91-271
               

               
Cow position:
               
chr1:36875180-36875003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
91-324
               

               
Cow position:
               
chr1:93810579-93810350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
92-233
               

               
Cow position:
               
chr1:25021920-25022064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
92-251
               

               
Cow position:
               
chr1:101280579-101280741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
30, 114
               

               
Conread position:
               
92-254
               

               
Cow position:
               
chr1:242710-242547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
47, 19
               

               
Conread position:
               
92-262
               

               
Cow position:
               
chr1:19962207-19962035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
34, 115
               

               
Conread position:
               
92-314
               

               
Cow position:
               
chr1:45223734-45223510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
45, 216
               

               
Conread position:
               
92-321
               

               
Cow position:
               
chr1:37726257-37726497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
24, 224
               

               
Conread position:
               
92-322
               

               
Cow position:
               
chr1:52039791-52039553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 109
               

               
Conread position:
               
92-322
               

               
Cow position:
               
chr1:93528852-93528621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
93, 43
               

               
Conread position:
               
92-323
               

               
Cow position:
               
chr1:27881761-27881534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
21, 109
               

               
Conread position:
               
92-323
               

               
Cow position:
               
chr1:72813777-72813536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
30, 184
               

               
Conread position:
               
92-324
               

               
Cow position:
               
chr1:21787484-21787251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
177, 11
               

               
Conread position:
               
92-324
               

               
Cow position:
               
chr1:72105561-72105332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
48, 125
               

               
Conread position:
               
94-324
               

               
Cow position:
               
chr1:76019541-76019775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
28, 75
               

               
Conread position:
               
94-324
               

               
Cow position:
               
chr1:101866343-101866576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
31, 64
               

               
Conread position:
               
95-264
               

               
Cow position:
               
chr1:63079157-63078990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
43, 84
               

               
Conread position:
               
95-324
               

               
Cow position:
               
chr1:14308874-14309114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
30, 71
               

               
Conread position:
               
95-324
               

               
Cow position:
               
chr1:22729210-22728972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
27, 220
               

               
Conread position:
               
95-324
               

               
Cow position:
               
chr1:86073748-86073516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
45, 173
               

               
Conread position:
               
95-324
               

               
Cow position:
               
chr1:90864135-90864372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 219
               

               
Conread position:
               
97-296
               

               
Cow position:
               
chr1:63530712-63530509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
18, 177
               

               
Conread position:
               
98-281
               

               
Cow position:
               
chr1:62034678-62034863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
25, 87
               

               
Conread position:
               
98-321
               

               
Cow position:
               
chr1:82513205-82513432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
28, 48
               

               
Conread position:
               
98-324
               

               
Cow position:
               
chr1:102349605-102349833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
46, 16
               

               
Conread position:
               
99-324
               

               
Cow position:
               
chr1:80841794-80841573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
41, 160
               

               
Conread position:
               
99-324
               

               
Cow position:
               
chr1:89381425-89381195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
27, 159
               

               
Conread position:
               
100-230
               

               
Cow position:
               
chr1:29671077-29671210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
100-324
               

               
Cow position:
               
chr1:24581721-24581503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
38, 124
               

               
Conread position:
               
100-324
               

               
Cow position:
               
chr1:53458842-53458617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
40, 102
               

               
Conread position:
               
102-321
               

               
Cow position:
               
chr1:93044162-93043947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
36, 118
               

               
Conread position:
               
104-239
               

               
Cow position:
               
chr1:44269231-44269096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
38, 96
               

               
Conread position:
               
104-254
               

               
Cow position:
               
chr1:56711460-56711609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
36, 106
               

               
Conread position:
               
104-270
               

               
Cow position:
               
chr1:45478720-45478884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
36, 106
               

               
Conread position:
               
104-280
               

               
Cow position:
               
chr1:71915977-71916155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
36, 119
               

               
Conread position:
               
104-302
               

               
Cow position:
               
chr1:83463723-83463534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
20, 49
               

               
Conread position:
               
104-310
               

               
Cow position:
               
chr1:95072475-95072264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
36, 206
               

               
Conread position:
               
104-324
               

               
Cow position:
               
chr1:43872177-43872410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
36, 88
               

               
Conread position:
               
104-324
               

               
Cow position:
               
chr1:72356498-72356279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
31, 117
               

               
Conread position:
               
104-324
               

               
Cow position:
               
chr1:90975944-90976164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
39, 165
               

               
Conread position:
               
106-228
               

               
Cow position:
               
chr1:25194762-25194883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
106-322
               

               
Cow position:
               
chr1:98461423-98461210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
106-323
               

               
Cow position:
               
chr1:28177146-28176931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 94
               

               
Conread position:
               
107-241
               

               
Cow position:
               
chr1:53640852-53640718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
33, 85
               

               
Conread position:
               
107-254
               

               
Cow position:
               
chr1:45873930-45874088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
107-265
               

               
Cow position:
               
chr1:10716636-10716477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
33, 110
               

               
Conread position:
               
107-268
               

               
Cow position:
               
chr1:808678-808845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
107-292
               

               
Cow position:
               
chr1:8624310-8624498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
29, 49
               

               
Conread position:
               
107-296
               

               
Cow position:
               
chr1:49153456-49153263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
33, 57
               

               
Conread position:
               
107-323
               

               
Cow position:
               
chr1:85549940-85550156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
29, 11
               

               
Conread position:
               
107-324
               

               
Cow position:
               
chr1:47233338-47233558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 202
               

               
Conread position:
               
107-324
               

               
Cow position:
               
chr1:48105296-48105513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
33, 80
               

               
Conread position:
               
107-324
               

               
Cow position:
               
chr1:52995166-52994941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
33, 207
               

               
Conread position:
               
107-324
               

               
Cow position:
               
chr1:65103754-65103540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 16
               

               
Conread position:
               
108-304
               

               
Cow position:
               
chr1:36578650-36578468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
108-320
               

               
Cow position:
               
chr1:77683486-77683282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
108-322
               

               
Cow position:
               
chr1:62036942-62036726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 197
               

               
Conread position:
               
108-324
               

               
Cow position:
               
chr1:80422411-80422201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
32, 100
               

               
Conread position:
               
109-324
               

               
Cow position:
               
chr1:42545647-42545865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
143, 25
               

               
Conread position:
               
110-221
               

               
Cow position:
               
chr1:100746711-100746828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
110-233
               

               
Cow position:
               
chr1:46100703-46100829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
110-247
               

               
Cow position:
               
chr1:83783792-83783933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
110-251
               

               
Cow position:
               
chr1:64019384-64019528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
110-253
               

               
Cow position:
               
chr1:10421842-10421699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
30, 19
               

               
Conread position:
               
110-254
               

               
Cow position:
               
chr1:3417492-3417338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
110-254
               

               
Cow position:
               
chr1:19304707-19304562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
30, 79
               

               
Conread position:
               
110-255
               

               
Cow position:
               
chr1:95153008-95152860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
110-261
               

               
Cow position:
               
chr1:57091117-57090961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
110-263
               

               
Cow position:
               
chr1:65909647-65909494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
30, 129
               

               
Conread position:
               
110-265
               

               
Cow position:
               
chr1:40935633-40935788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
110-274
               

               
Cow position:
               
chr1:33775515-33775673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
99, 25
               

               
Conread position:
               
110-274
               

               
Cow position:
               
chr1:101177652-101177485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 68
               

               
Conread position:
               
110-278
               

               
Cow position:
               
chr1:73719599-73719429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 150
               

               
Conread position:
               
110-279
               

               
Cow position:
               
chr1:816273-816444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
25, 97
               

               
Conread position:
               
110-280
               

               
Cow position:
               
chr1:53308257-53308423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
110-286
               

               
Cow position:
               
chr1:43311900-43312075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
160, 25
               

               
Conread position:
               
110-295
               

               
Cow position:
               
chr1:52912761-52912950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
30, 69
               

               
Conread position:
               
110-295
               

               
Cow position:
               
chr1:84768742-84768931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
30, 142
               

               
Conread position:
               
110-310
               

               
Cow position:
               
chr1:86912575-86912373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
28, 197
               

               
Conread position:
               
110-314
               

               
Cow position:
               
chr1:48730696-48730897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
30, 19
               

               
Conread position:
               
110-321
               

               
Cow position:
               
chr1:23998795-23999003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
26, 58
               

               
Conread position:
               
110-321
               

               
Cow position:
               
chr1:51394552-51394339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
146, 168
               

               
Conread position:
               
110-321
               

               
Cow position:
               
chr1:68672465-68672676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
30, 103
               

               
Conread position:
               
110-321
               

               
Cow position:
               
chr1:77232441-77232650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 167
               

               
Conread position:
               
110-321
               

               
Cow position:
               
chr1:81580314-81580093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
30, 90
               

               
Conread position:
               
110-321
               

               
Cow position:
               
chr1:83748076-83747864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
157, 84
               

               
Conread position:
               
110-321
               

               
Cow position:
               
chr1:93554973-93554762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
30, 160
               

               
Conread position:
               
110-321
               

               
Cow position:
               
chr1:98576184-98575969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
25, 160
               

               
Conread position:
               
110-321
               

               
Cow position:
               
chr1:98594702-98594496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 116
               

               
Conread position:
               
110-322
               

               
Cow position:
               
chr1:37706846-37707051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
166, 25
               

               
Conread position:
               
110-322
               

               
Cow position:
               
chr1:81913018-81913232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
30, 72
               

               
Conread position:
               
110-322
               

               
Cow position:
               
chr1:85162408-85162627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
23, 202
               

               
Conread position:
               
110-323
               

               
Cow position:
               
chr1:5580192-5579976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 88
               

               
Conread position:
               
110-323
               

               
Cow position:
               
chr1:37886675-37886888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
30, 100
               

               
Conread position:
               
110-323
               

               
Cow position:
               
chr1:63434672-63434884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
165, 154
               

               
Conread position:
               
110-323
               

               
Cow position:
               
chr1:78857192-78857400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 158
               

               
Conread position:
               
110-323
               

               
Cow position:
               
chr1:98551856-98551638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 39
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr1:8670907-8670689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr1:23512524-23512734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 11
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr1:24777856-24778065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
24, 67
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr1:34771366-34771583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
30, 190
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr1:39068819-39069034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
26, 182
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr1:41047165-41047383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
26, 44
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr1:43311634-43311855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
30, 203
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr1:45553106-45553323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
30, 92
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr1:53671613-53671820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
32, 110
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr1:57900587-57900819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
30, 171
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr1:68253732-68253512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
30, 202
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr1:68763550-68763762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 86
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr1:90868310-90868520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr1:95153359-95153140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
30, 121
               

               
Conread position:
               
111-241
               

               
Cow position:
               
chr1:32857174-32857035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
111-298
               

               
Cow position:
               
chr1:16961876-16962063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 160
               

               
Conread position:
               
111-305
               

               
Cow position:
               
chr1:76657931-76658141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
111-321
               

               
Cow position:
               
chr1:74822586-74822373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
29, 6
               

               
Conread position:
               
111-323
               

               
Cow position:
               
chr1:27145521-27145728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
111-324
               

               
Cow position:
               
chr1:6078025-6077819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
23, 12
               

               
Conread position:
               
111-324
               

               
Cow position:
               
chr1:19885517-19885304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
29, 95
               

               
Conread position:
               
111-324
               

               
Cow position:
               
chr1:36932285-36932078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
111-324
               

               
Cow position:
               
chr1:67305111-67305324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
98, 5
               

               
Conread position:
               
111-324
               

               
Cow position:
               
chr1:78697635-78697849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
9, 130
               

               
Conread position:
               
111-324
               

               
Cow position:
               
chr1:92369870-92369653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
29, 48
               

               
Conread position:
               
112-266
               

               
Cow position:
               
chr1:68127058-68127212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
112-272
               

               
Cow position:
               
chr1:54157431-54157266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
112-320
               

               
Cow position:
               
chr1:261337-261560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
28, 102
               

               
Conread position:
               
112-322
               

               
Cow position:
               
chr1:48769938-48769726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
19, 159
               

               
Conread position:
               
112-324
               

               
Cow position:
               
chr1:84255902-84255684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 200
               

               
Conread position:
               
112-324
               

               
Cow position:
               
chr1:99793678-99793464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
167, 25
               

               
Conread position:
               
113-303
               

               
Cow position:
               
chr1:60901207-60901014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 68
               

               
Conread position:
               
113-311
               

               
Cow position:
               
chr1:3882325-3882527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
27, 185
               

               
Conread position:
               
113-324
               

               
Cow position:
               
chr1:48214024-48214241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
27, 92
               

               
Conread position:
               
113-324
               

               
Cow position:
               
chr1:68676490-68676282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
153, 114
               

               
Conread position:
               
113-324
               

               
Cow position:
               
chr1:98512060-98511849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
27, 43
               

               
Conread position:
               
114-233
               

               
Cow position:
               
chr1:84288535-84288414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
26, 10
               

               
Conread position:
               
114-288
               

               
Cow position:
               
chr1:69481817-69481996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
114-324
               

               
Cow position:
               
chr1:91874784-91874988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
26, 72
               

               
Conread position:
               
115-293
               

               
Cow position:
               
chr1:95974531-95974345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
23, 14
               

               
Conread position:
               
115-309
               

               
Cow position:
               
chr1:79844591-79844402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
115-312
               

               
Cow position:
               
chr1:27380586-27380393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
23, 85
               

               
Conread position:
               
115-324
               

               
Cow position:
               
chr1:38401929-38401715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
23, 92
               

               
Conread position:
               
115-324
               

               
Cow position:
               
chr1:67688451-67688659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
25, 71
               

               
Conread position:
               
116-236
               

               
Cow position:
               
chr1:23055178-23055055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
116-323
               

               
Cow position:
               
chr1:85647653-85647860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
8, 39
               

               
Conread position:
               
117-235
               

               
Cow position:
               
chr1:55194117-55194237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
117-254
               

               
Cow position:
               
chr1:54732360-54732495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
117-273
               

               
Cow position:
               
chr1:42537198-42537351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
78, 18
               

               
Conread position:
               
117-278
               

               
Cow position:
               
chr1:42360418-42360251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
23, 40
               

               
Conread position:
               
117-311
               

               
Cow position:
               
chr1:5023635-5023830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
149, 190
               

               
Conread position:
               
118-299
               

               
Cow position:
               
chr1:5135580-5135759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
20, 129
               

               
Conread position:
               
118-305
               

               
Cow position:
               
chr1:99221227-99221416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
24, 91
               

               
Conread position:
               
118-313
               

               
Cow position:
               
chr1:78067941-78068133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
22, 148
               

               
Conread position:
               
118-324
               

               
Cow position:
               
chr1:18780200-18780415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
21, 197
               

               
Conread position:
               
118-324
               

               
Cow position:
               
chr1:71253427-71253632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
22, 86
               

               
Conread position:
               
118-324
               

               
Cow position:
               
chr1:95215064-95215260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
118-324
               

               
Cow position:
               
chr1:100800480-100800277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
24, 168
               

               
Conread position:
               
119-320
               

               
Cow position:
               
chr1:83582805-83583010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
19, 190
               

               
Conread position:
               
119-324
               

               
Cow position:
               
chr1:3789942-3790145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
21, 84
               

               
Conread position:
               
120-275
               

               
Cow position:
               
chr1:82556290-82556440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
121-254
               

               
Cow position:
               
chr1:52429537-52429670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
121-324
               

               
Cow position:
               
chr1:19226935-19227134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
144, 15
               

               
Conread position:
               
121-324
               

               
Cow position:
               
chr1:30417922-30418117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
19, 108
               

               
Conread position:
               
122-311
               

               
Cow position:
               
chr1:41252285-41252475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
18, 91
               

               
Conread position:
               
123-321
               

               
Cow position:
               
chr1:91039054-91039251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
142, 12
               

               
Conread position:
               
124-286
               

               
Cow position:
               
chr1:81582237-81582072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
16, 29
               

               
Conread position:
               
125-304
               

               
Cow position:
               
chr1:5155100-5155278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
91, 21
               

               
Conread position:
               
125-324
               

               
Cow position:
               
chr1:70380024-70380225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
142, 108
               

               
Conread position:
               
125-324
               

               
Cow position:
               
chr1:88652753-88652551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
98, 9
               

               
Conread position:
               
127-324
               

               
Cow position:
               
chr1:7350665-7350463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
139, 184
               

               
Conread position:
               
128-322
               

               
Cow position:
               
chr1:4581214-4581404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
148, 157
               

               
Conread position:
               
129-277
               

               
Cow position:
               
chr1:31855129-31855280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
129-321
               

               
Cow position:
               
chr1:51968577-51968384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
136, 103
               

               
Conread position:
               
129-324
               

               
Cow position:
               
chr1:89350080-89349883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 179
               

               
Conread position:
               
130-324
               

               
Cow position:
               
chr1:26943422-26943228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
141, 177
               

               
Conread position:
               
132-324
               

               
Cow position:
               
chr1:3720332-3720513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
144, 22
               

               
Conread position:
               
133-322
               

               
Cow position:
               
chr1:81868618-81868803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
134-287
               

               
Cow position:
               
chr1:46783422-46783270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
135-322
               

               
Cow position:
               
chr1:88618705-88618519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
130, 171
               

               
Conread position:
               
135-324
               

               
Cow position:
               
chr1:26427752-26427941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
118, 161
               

               
Conread position:
               
135-324
               

               
Cow position:
               
chr1:43822508-43822321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
132, 66
               

               
Conread position:
               
136-263
               

               
Cow position:
               
chr1:80442851-80442724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 63
               

               
Conread position:
               
136-324
               

               
Cow position:
               
chr1:81355595-81355788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
77, 175
               

               
Conread position:
               
137-250
               

               
Cow position:
               
chr1:95516146-95516033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
137-254
               

               
Cow position:
               
chr1:31599032-31598915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
137-274
               

               
Cow position:
               
chr1:5006268-5006132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
137-274
               

               
Cow position:
               
chr1:83618497-83618638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
137-278
               

               
Cow position:
               
chr1:44125531-44125670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
123, 62
               

               
Conread position:
               
137-303
               

               
Cow position:
               
chr1:19515512-19515674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
137-309
               

               
Cow position:
               
chr1:30136247-30136419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
128, 82
               

               
Conread position:
               
137-309
               

               
Cow position:
               
chr1:89498053-89497889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
128, 31
               

               
Conread position:
               
137-311
               

               
Cow position:
               
chr1:6826192-6826363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
169, 62
               

               
Conread position:
               
137-321
               

               
Cow position:
               
chr1:3166969-3167151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
139, 62
               

               
Conread position:
               
137-321
               

               
Cow position:
               
chr1:37309412-37309589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
137-321
               

               
Cow position:
               
chr1:39509951-39510131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
137-321
               

               
Cow position:
               
chr1:75142104-75141922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
176, 157
               

               
Conread position:
               
137-322
               

               
Cow position:
               
chr1:4414102-4414285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
48, 63
               

               
Conread position:
               
137-322
               

               
Cow position:
               
chr1:6752124-6752311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
99, 134
               

               
Conread position:
               
137-322
               

               
Cow position:
               
chr1:12978789-12978603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 170
               

               
Conread position:
               
137-323
               

               
Cow position:
               
chr1:30189259-30189068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
74, 172
               

               
Conread position:
               
137-324
               

               
Cow position:
               
chr1:20205134-20204949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
134, 62
               

               
Conread position:
               
137-324
               

               
Cow position:
               
chr1:61542812-61542997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
137-324
               

               
Cow position:
               
chr1:80900226-80900038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
122, 22
               

               
Conread position:
               
137-324
               

               
Cow position:
               
chr1:82884288-82884469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
51, 36
               

               
Conread position:
               
137-324
               

               
Cow position:
               
chr1:92434106-92433921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
129, 20
               

               
Conread position:
               
137-324
               

               
Cow position:
               
chr1:96947614-96947796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
132, 45
               

               
Conread position:
               
137-324
               

               
Cow position:
               
chr1:100706233-100706054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
138-321
               

               
Cow position:
               
chr1:100393057-100393243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
80, 171
               

               
Conread position:
               
139-322
               

               
Cow position:
               
chr1:85774562-85774377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
104, 129
               

               
Conread position:
               
139-324
               

               
Cow position:
               
chr1:45288766-45288951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
130, 169
               

               
Conread position:
               
139-324
               

               
Cow position:
               
chr1:62291596-62291770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
139-324
               

               
Cow position:
               
chr1:89230126-89230309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
117, 56
               

               
Conread position:
               
140-321
               

               
Cow position:
               
chr1:74947014-74947199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
115, 34
               

               
Conread position:
               
140-324
               

               
Cow position:
               
chr1:56635202-56635016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
126, 109
               

               
Conread position:
               
140-324
               

               
Cow position:
               
chr1:81563849-81563657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
133, 174
               

               
Conread position:
               
141-253
               

               
Cow position:
               
chr1:83066944-83067056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
142-268
               

               
Cow position:
               
chr1:60466331-60466202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
143-324
               

               
Cow position:
               
chr1:20384522-20384699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
120, 64
               

               
Conread position:
               
144-324
               

               
Cow position:
               
chr1:53425277-53425096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
65, 134
               

               
Conread position:
               
145-320
               

               
Cow position:
               
chr1:91800499-91800677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 52
               

               
Conread position:
               
145-324
               

               
Cow position:
               
chr1:43703508-43703328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
126, 162
               

               
Conread position:
               
145-324
               

               
Cow position:
               
chr1:87212032-87211864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
150-324
               

               
Cow position:
               
chr1:89485674-89485497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
67, 159
               

               
Conread position:
               
153-324
               

               
Cow position:
               
chr1:4374246-4374418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
112, 140
               

               
Conread position:
               
153-324
               

               
Cow position:
               
chr1:89076542-89076708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
155-324
               

               
Cow position:
               
chr1:91816682-91816851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
109, 151
               

               
Conread position:
               
156-324
               

               
Cow position:
               
chr1:68951713-68951548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
156-324
               

               
Cow position:
               
chr1:101946626-101946789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
160-321
               

               
Cow position:
               
chr1:26729797-26729640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
95, 23
               

               
Conread position:
               
165-276
               

               
Cow position:
               
chr1:97761679-97761569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
165-317
               

               
Cow position:
               
chr1:5539197-5539350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
89, 115
               

               
Conread position:
               
165-322
               

               
Cow position:
               
chr1:9470318-9470475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
5, 141
               

               
Conread position:
               
165-323
               

               
Cow position:
               
chr1:6788204-6788364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
91, 133
               

               
Conread position:
               
165-324
               

               
Cow position:
               
chr1:61560644-61560806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
101, 144
               

               
Conread position:
               
167-322
               

               
Cow position:
               
chr1:87440544-87440385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
95, 12
               

               
Conread position:
               
168-321
               

               
Cow position:
               
chr1:80904843-80904689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
97, 19
               

               
Conread position:
               
170-324
               

               
Cow position:
               
chr1:91369935-91370088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
95, 61
               

               
Conread position:
               
173-321
               

               
Cow position:
               
chr1:41695671-41695523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
92, 8
               

               
Conread position:
               
173-324
               

               
Cow position:
               
chr1:63390696-63390850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
92, 136
               

               
Conread position:
               
183-324
               

               
Cow position:
               
chr1:24445567-24445707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
82, 33
               

               
Conread position:
               
187-321
               

               
Cow position:
               
chr1:89508606-89508480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
192-324
               

               
Cow position:
               
chr1:44155302-44155171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
21, 105
               

               
Conread position:
               
201-311
               

               
Cow position:
               
chr1:99039312-99039422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
77, 105
               

               
Conread position:
               
216-324
               

               
Cow position:
               
chr1:1403453-1403560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
89, 0
               
Show alignments to all cow chromosomes.