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Cow genome map

           
Conread name:
           
reru19c_i21.y1
        

               
Conread position:
               
3-252
               

               
Cow position:
               
chr21:37928956-37928699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
58, 6
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr21:32559069-32559381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 36
               

               
Conread position:
               
4-295
               

               
Cow position:
               
chr21:42562929-42562643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 76
               

               
Conread position:
               
4-324
               

               
Cow position:
               
chr21:10004576-10004909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
17, 58
               

               
Conread position:
               
4-324
               

               
Cow position:
               
chr21:41974088-41974397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 37
               

               
Conread position:
               
5-187
               

               
Cow position:
               
chr21:9315103-9314920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
10, 18
               

               
Conread position:
               
5-321
               

               
Cow position:
               
chr21:4400111-4399784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
7, 249
               

               
Conread position:
               
5-324
               

               
Cow position:
               
chr21:27521039-27521353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
20, 66
               

               
Conread position:
               
6-322
               

               
Cow position:
               
chr21:7581604-7581926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
59, 33
               

               
Conread position:
               
8-324
               

               
Cow position:
               
chr21:5427227-5426919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
9-222
               

               
Cow position:
               
chr21:27744320-27744105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
71, 43
               

               
Conread position:
               
9-317
               

               
Cow position:
               
chr21:44724078-44724380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
11, 64
               

               
Conread position:
               
10-324
               

               
Cow position:
               
chr21:21907142-21907451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
11, 66
               

               
Conread position:
               
11-231
               

               
Cow position:
               
chr21:8494936-8494710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
100, 20
               

               
Conread position:
               
11-321
               

               
Cow position:
               
chr21:30222644-30222324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 79
               

               
Conread position:
               
11-324
               

               
Cow position:
               
chr21:17184228-17183901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
12, 21
               

               
Conread position:
               
12-206
               

               
Cow position:
               
chr21:31462853-31462658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
20, 37
               

               
Conread position:
               
12-257
               

               
Cow position:
               
chr21:5341801-5342049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
65, 17
               

               
Conread position:
               
13-324
               

               
Cow position:
               
chr21:12354411-12354715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
46, 10
               

               
Conread position:
               
15-243
               

               
Cow position:
               
chr21:48482236-48482469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
60, 71
               

               
Conread position:
               
15-278
               

               
Cow position:
               
chr21:36763351-36763086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
101, 24
               

               
Conread position:
               
15-321
               

               
Cow position:
               
chr21:8426740-8426427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 25
               

               
Conread position:
               
16-282
               

               
Cow position:
               
chr21:42145113-42144847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
36, 48
               

               
Conread position:
               
18-242
               

               
Cow position:
               
chr21:20174598-20174378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
89, 29
               

               
Conread position:
               
18-249
               

               
Cow position:
               
chr21:11182843-11182606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
11, 78
               

               
Conread position:
               
18-302
               

               
Cow position:
               
chr21:8430810-8431103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
44, 34
               

               
Conread position:
               
18-323
               

               
Cow position:
               
chr21:16570191-16569880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 112
               

               
Conread position:
               
18-324
               

               
Cow position:
               
chr21:18064642-18064935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
44, 18
               

               
Conread position:
               
20-324
               

               
Cow position:
               
chr21:8349611-8349306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 12
               

               
Conread position:
               
21-274
               

               
Cow position:
               
chr21:20163996-20163736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 10
               

               
Conread position:
               
23-264
               

               
Cow position:
               
chr21:39394031-39393786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
13, 25
               

               
Conread position:
               
24-324
               

               
Cow position:
               
chr21:20262060-20262356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
30, 53
               

               
Conread position:
               
25-208
               

               
Cow position:
               
chr21:36398284-36398468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
37, 29
               

               
Conread position:
               
25-274
               

               
Cow position:
               
chr21:22851200-22850951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
27, 62
               

               
Conread position:
               
25-324
               

               
Cow position:
               
chr21:33580691-33580399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
99, 23
               

               
Conread position:
               
26-211
               

               
Cow position:
               
chr21:37495662-37495855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
26-231
               

               
Cow position:
               
chr21:236173-235976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
26-299
               

               
Cow position:
               
chr21:24598925-24598657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
199, 33
               

               
Conread position:
               
26-317
               

               
Cow position:
               
chr21:24296480-24296780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
35, 62
               

               
Conread position:
               
26-321
               

               
Cow position:
               
chr21:14464866-14464565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
36, 43
               

               
Conread position:
               
26-324
               

               
Cow position:
               
chr21:22014474-22014165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 13
               

               
Conread position:
               
26-324
               

               
Cow position:
               
chr21:22861278-22860977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 101
               

               
Conread position:
               
27-230
               

               
Cow position:
               
chr21:5214636-5214420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
6, 61
               

               
Conread position:
               
27-323
               

               
Cow position:
               
chr21:33996966-33997248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 66
               

               
Conread position:
               
28-324
               

               
Cow position:
               
chr21:48233893-48234182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 49
               

               
Conread position:
               
29-324
               

               
Cow position:
               
chr21:38449175-38449469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
86, 51
               

               
Conread position:
               
30-317
               

               
Cow position:
               
chr21:37299753-37299445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 297
               

               
Conread position:
               
33-313
               

               
Cow position:
               
chr21:38918479-38918192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
28, 8
               

               
Conread position:
               
33-324
               

               
Cow position:
               
chr21:27810670-27810386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 55
               

               
Conread position:
               
33-324
               

               
Cow position:
               
chr21:28030566-28030266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 83
               

               
Conread position:
               
33-324
               

               
Cow position:
               
chr21:43388638-43388329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
19, 28
               

               
Conread position:
               
34-324
               

               
Cow position:
               
chr21:2679816-2679534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
87, 22
               

               
Conread position:
               
34-324
               

               
Cow position:
               
chr21:10823827-10823545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 7
               

               
Conread position:
               
35-212
               

               
Cow position:
               
chr21:29011705-29011880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
87, 37
               

               
Conread position:
               
35-321
               

               
Cow position:
               
chr21:47713732-47714024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
19, 52
               

               
Conread position:
               
36-321
               

               
Cow position:
               
chr21:13656366-13656654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
75, 11
               

               
Conread position:
               
37-249
               

               
Cow position:
               
chr21:25012350-25012135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
36, 48
               

               
Conread position:
               
37-324
               

               
Cow position:
               
chr21:12461700-12461992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
40, 35
               

               
Conread position:
               
38-199
               

               
Cow position:
               
chr21:45376215-45376051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
88, 34
               

               
Conread position:
               
38-324
               

               
Cow position:
               
chr21:34010129-34010419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
71, 10
               

               
Conread position:
               
39-311
               

               
Cow position:
               
chr21:44565460-44565731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
35, 20
               

               
Conread position:
               
39-324
               

               
Cow position:
               
chr21:27229532-27229816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 48
               

               
Conread position:
               
39-324
               

               
Cow position:
               
chr21:30835633-30835341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
23, 31
               

               
Conread position:
               
40-324
               

               
Cow position:
               
chr21:28919266-28919546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
231, 8
               

               
Conread position:
               
41-202
               

               
Cow position:
               
chr21:16119897-16120061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
41-212
               

               
Cow position:
               
chr21:21159068-21158900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
83, 39
               

               
Conread position:
               
41-233
               

               
Cow position:
               
chr21:13883755-13883550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
39, 13
               

               
Conread position:
               
41-244
               

               
Cow position:
               
chr21:8506279-8506487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
15, 19
               

               
Conread position:
               
41-267
               

               
Cow position:
               
chr21:11678044-11678268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
37, 16
               

               
Conread position:
               
41-302
               

               
Cow position:
               
chr21:643590-643323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 43
               

               
Conread position:
               
41-316
               

               
Cow position:
               
chr21:802055-802321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 46
               

               
Conread position:
               
41-321
               

               
Cow position:
               
chr21:44251577-44251860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
81, 7
               

               
Conread position:
               
41-324
               

               
Cow position:
               
chr21:6051769-6051485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
22, 7
               

               
Conread position:
               
41-324
               

               
Cow position:
               
chr21:13365608-13365316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
57, 43
               

               
Conread position:
               
41-324
               

               
Cow position:
               
chr21:28244731-28244447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
98, 7
               

               
Conread position:
               
41-324
               

               
Cow position:
               
chr21:29978498-29978782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 13
               

               
Conread position:
               
41-324
               

               
Cow position:
               
chr21:38901028-38900756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
43-324
               

               
Cow position:
               
chr21:868656-868947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
19, 27
               

               
Conread position:
               
44-269
               

               
Cow position:
               
chr21:24797919-24797690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
44-324
               

               
Cow position:
               
chr21:30848686-30848970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
45-324
               

               
Cow position:
               
chr21:6998202-6997918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
95, 27
               

               
Conread position:
               
45-324
               

               
Cow position:
               
chr21:15584157-15584442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
16, 38
               

               
Conread position:
               
47-322
               

               
Cow position:
               
chr21:7673372-7673100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
93, 35
               

               
Conread position:
               
47-324
               

               
Cow position:
               
chr21:42209371-42209653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
14, 80
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr21:82331-82057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 215
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr21:957929-957650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
27, 11
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr21:36695830-36696112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
63, 11
               

               
Conread position:
               
48-324
               

               
Cow position:
               
chr21:38121350-38121079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
32, 13
               

               
Conread position:
               
49-323
               

               
Cow position:
               
chr21:1511545-1511270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
24, 10
               

               
Conread position:
               
50-250
               

               
Cow position:
               
chr21:2536878-2537087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 24
               

               
Conread position:
               
52-311
               

               
Cow position:
               
chr21:7768695-7768425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
10, 237
               

               
Conread position:
               
52-324
               

               
Cow position:
               
chr21:33413843-33414107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
208, 71
               

               
Conread position:
               
53-293
               

               
Cow position:
               
chr21:39319155-39319406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
68, 6
               

               
Conread position:
               
54-229
               

               
Cow position:
               
chr21:8351039-8351223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
19, 32
               

               
Conread position:
               
54-322
               

               
Cow position:
               
chr21:31691727-31691462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 81
               

               
Conread position:
               
55-206
               

               
Cow position:
               
chr21:3430807-3430654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
23, 109
               

               
Conread position:
               
55-322
               

               
Cow position:
               
chr21:17193497-17193773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
67, 25
               

               
Conread position:
               
58-323
               

               
Cow position:
               
chr21:42007206-42007484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
22, 181
               

               
Conread position:
               
59-181
               

               
Cow position:
               
chr21:18041627-18041746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
21, 43
               

               
Conread position:
               
59-190
               

               
Cow position:
               
chr21:3595784-3595923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
26, 42
               

               
Conread position:
               
59-248
               

               
Cow position:
               
chr21:15012692-15012493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
21, 70
               

               
Conread position:
               
59-320
               

               
Cow position:
               
chr21:4280426-4280691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
49, 39
               

               
Conread position:
               
59-321
               

               
Cow position:
               
chr21:297990-297733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
214, 85
               

               
Conread position:
               
59-323
               

               
Cow position:
               
chr21:12339878-12339616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
21, 141
               

               
Conread position:
               
59-323
               

               
Cow position:
               
chr21:15911639-15911379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
21, 48
               

               
Conread position:
               
60-322
               

               
Cow position:
               
chr21:47719055-47719325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 26
               

               
Conread position:
               
61-243
               

               
Cow position:
               
chr21:40059275-40059087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
22, 69
               

               
Conread position:
               
61-321
               

               
Cow position:
               
chr21:31159645-31159384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
19, 138
               

               
Conread position:
               
61-324
               

               
Cow position:
               
chr21:976890-977167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
16, 220
               

               
Conread position:
               
61-324
               

               
Cow position:
               
chr21:1059317-1059056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
21, 63
               

               
Conread position:
               
61-324
               

               
Cow position:
               
chr21:33791138-33791388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 95
               

               
Conread position:
               
61-324
               

               
Cow position:
               
chr21:44860881-44861133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 28
               

               
Conread position:
               
61-324
               

               
Cow position:
               
chr21:47763867-47764137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
19, 114
               

               
Conread position:
               
62-267
               

               
Cow position:
               
chr21:24875599-24875387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 24
               

               
Conread position:
               
62-296
               

               
Cow position:
               
chr21:36508477-36508246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
59, 22
               

               
Conread position:
               
62-324
               

               
Cow position:
               
chr21:19615417-19615152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
81, 22
               

               
Conread position:
               
62-324
               

               
Cow position:
               
chr21:21169250-21169514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
49, 29
               

               
Conread position:
               
62-324
               

               
Cow position:
               
chr21:34654317-34654054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 170
               

               
Conread position:
               
63-206
               

               
Cow position:
               
chr21:30031138-30031290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
65-253
               

               
Cow position:
               
chr21:30243443-30243632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
22, 11
               

               
Conread position:
               
65-324
               

               
Cow position:
               
chr21:9416496-9416226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
15, 251
               

               
Conread position:
               
65-324
               

               
Cow position:
               
chr21:41156113-41155841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 19
               

               
Conread position:
               
68-320
               

               
Cow position:
               
chr21:17642748-17643001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
19, 121
               

               
Conread position:
               
71-311
               

               
Cow position:
               
chr21:674904-674675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
62, 13
               

               
Conread position:
               
71-321
               

               
Cow position:
               
chr21:742510-742266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
69, 13
               

               
Conread position:
               
72-230
               

               
Cow position:
               
chr21:745405-745247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
62, 12
               

               
Conread position:
               
72-296
               

               
Cow position:
               
chr21:41287561-41287790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
68, 12
               

               
Conread position:
               
72-321
               

               
Cow position:
               
chr21:23535948-23535694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
72-322
               

               
Cow position:
               
chr21:47464884-47465141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
56, 12
               

               
Conread position:
               
72-323
               

               
Cow position:
               
chr21:23822387-23822146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
39, 19
               

               
Conread position:
               
72-324
               

               
Cow position:
               
chr21:71821-71562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 12
               

               
Conread position:
               
72-324
               

               
Cow position:
               
chr21:10561350-10561606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
58, 12
               

               
Conread position:
               
72-324
               

               
Cow position:
               
chr21:10656866-10657124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
39, 12
               

               
Conread position:
               
72-324
               

               
Cow position:
               
chr21:17874955-17875213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 12
               

               
Conread position:
               
72-324
               

               
Cow position:
               
chr21:20160913-20160656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
39, 8
               

               
Conread position:
               
72-324
               

               
Cow position:
               
chr21:23587107-23586858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
181, 12
               

               
Conread position:
               
72-324
               

               
Cow position:
               
chr21:28211412-28211175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
5, 13
               

               
Conread position:
               
72-324
               

               
Cow position:
               
chr21:32339510-32339759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
68, 12
               

               
Conread position:
               
73-320
               

               
Cow position:
               
chr21:938255-938010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
39, 11
               

               
Conread position:
               
73-324
               

               
Cow position:
               
chr21:6713290-6713548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
52, 11
               

               
Conread position:
               
74-263
               

               
Cow position:
               
chr21:13164088-13163898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
62, 16
               

               
Conread position:
               
76-324
               

               
Cow position:
               
chr21:11057655-11057897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
9, 16
               

               
Conread position:
               
78-232
               

               
Cow position:
               
chr21:27409506-27409662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
46, 6
               

               
Conread position:
               
78-321
               

               
Cow position:
               
chr21:18059730-18059977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
44, 6
               

               
Conread position:
               
79-234
               

               
Cow position:
               
chr21:13043796-13043952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
57, 133
               

               
Conread position:
               
79-274
               

               
Cow position:
               
chr21:17252749-17252950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 10
               

               
Conread position:
               
83-268
               

               
Cow position:
               
chr21:44591990-44592175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
57, 41
               

               
Conread position:
               
83-322
               

               
Cow position:
               
chr21:23672971-23672730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
34, 139
               

               
Conread position:
               
83-324
               

               
Cow position:
               
chr21:10978721-10978962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
28, 80
               

               
Conread position:
               
84-182
               

               
Cow position:
               
chr21:37110890-37110791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
84-189
               

               
Cow position:
               
chr21:28604310-28604204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
84-210
               

               
Cow position:
               
chr21:40930252-40930383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
84-240
               

               
Cow position:
               
chr21:30658085-30657932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
84-244
               

               
Cow position:
               
chr21:34738799-34738635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
84-250
               

               
Cow position:
               
chr21:40820627-40820801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
84-251
               

               
Cow position:
               
chr21:6735969-6736138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
56, 45
               

               
Conread position:
               
84-254
               

               
Cow position:
               
chr21:25014816-25014978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
84-264
               

               
Cow position:
               
chr21:6851389-6851210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
84-265
               

               
Cow position:
               
chr21:16498739-16498556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
42, 120
               

               
Conread position:
               
84-266
               

               
Cow position:
               
chr21:20213547-20213742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
84-267
               

               
Cow position:
               
chr21:26018605-26018413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
26, 97
               

               
Conread position:
               
84-280
               

               
Cow position:
               
chr21:28907325-28907522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
56, 117
               

               
Conread position:
               
84-290
               

               
Cow position:
               
chr21:19868738-19868946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
186, 39
               

               
Conread position:
               
84-296
               

               
Cow position:
               
chr21:12104577-12104369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
122, 42
               

               
Conread position:
               
84-301
               

               
Cow position:
               
chr21:30592090-30592307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
54, 136
               

               
Conread position:
               
84-303
               

               
Cow position:
               
chr21:28600108-28599887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
13, 129
               

               
Conread position:
               
84-303
               

               
Cow position:
               
chr21:46599582-46599357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
84-319
               

               
Cow position:
               
chr21:828986-829227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 69
               

               
Conread position:
               
84-322
               

               
Cow position:
               
chr21:29213931-29214181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
42, 215
               

               
Conread position:
               
84-322
               

               
Cow position:
               
chr21:41590342-41590586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
31, 201
               

               
Conread position:
               
84-322
               

               
Cow position:
               
chr21:44658785-44658562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
24, 40
               

               
Conread position:
               
84-323
               

               
Cow position:
               
chr21:41522184-41522428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
46, 128
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr21:641808-641564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 202
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr21:5970622-5970860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 55
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr21:6834274-6834028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 77
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr21:7824966-7825199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
42, 143
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr21:8206981-8206746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
181, 37
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr21:11644742-11644992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 232
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr21:14452461-14452214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
42, 190
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr21:17890527-17890281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
43, 228
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr21:19059867-19060109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
31, 78
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr21:24858540-24858293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
37, 231
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr21:29069099-29069351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 233
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr21:33982590-33982828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 119
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr21:34151804-34151562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
68, 127
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr21:37789778-37790022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
56, 226
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr21:42135395-42135642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 173
               

               
Conread position:
               
84-324
               

               
Cow position:
               
chr21:45835166-45835424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
32, 209
               

               
Conread position:
               
85-206
               

               
Cow position:
               
chr21:44732820-44732947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
41, 123
               

               
Conread position:
               
85-244
               

               
Cow position:
               
chr21:8509212-8509375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
42, 159
               

               
Conread position:
               
85-323
               

               
Cow position:
               
chr21:5898185-5898420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
52, 44
               

               
Conread position:
               
85-323
               

               
Cow position:
               
chr21:41140492-41140738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 135
               

               
Conread position:
               
86-245
               

               
Cow position:
               
chr21:39403306-39403468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
86-278
               

               
Cow position:
               
chr21:21616001-21615807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
54, 184
               

               
Conread position:
               
86-310
               

               
Cow position:
               
chr21:7169909-7169677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
86-324
               

               
Cow position:
               
chr21:14126494-14126266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
54, 25
               

               
Conread position:
               
86-324
               

               
Cow position:
               
chr21:44214333-44214102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 43
               

               
Conread position:
               
88-322
               

               
Cow position:
               
chr21:9990731-9990490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 168
               

               
Conread position:
               
88-324
               

               
Cow position:
               
chr21:45329734-45329968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
45, 143
               

               
Conread position:
               
90-276
               

               
Cow position:
               
chr21:23568443-23568251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
50, 184
               

               
Conread position:
               
90-317
               

               
Cow position:
               
chr21:3585146-3585382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
23, 211
               

               
Conread position:
               
90-317
               

               
Cow position:
               
chr21:28924324-28924095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
43, 8
               

               
Conread position:
               
91-324
               

               
Cow position:
               
chr21:7394589-7394360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
178, 38
               

               
Conread position:
               
91-324
               

               
Cow position:
               
chr21:28626445-28626218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
179, 44
               

               
Conread position:
               
92-323
               

               
Cow position:
               
chr21:15544021-15544239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
92-324
               

               
Cow position:
               
chr21:16152656-16152414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 222
               

               
Conread position:
               
92-324
               

               
Cow position:
               
chr21:20153173-20152932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
32, 223
               

               
Conread position:
               
92-324
               

               
Cow position:
               
chr21:29014701-29014935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
185, 113
               

               
Conread position:
               
92-324
               

               
Cow position:
               
chr21:40589264-40589507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 225
               

               
Conread position:
               
94-324
               

               
Cow position:
               
chr21:45473546-45473774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
34, 174
               

               
Conread position:
               
95-296
               

               
Cow position:
               
chr21:14760773-14760577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
44, 15
               

               
Conread position:
               
95-322
               

               
Cow position:
               
chr21:10118774-10118539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
41, 29
               

               
Conread position:
               
95-324
               

               
Cow position:
               
chr21:31253745-31253522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
30, 104
               

               
Conread position:
               
97-320
               

               
Cow position:
               
chr21:47160423-47160199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
169, 197
               

               
Conread position:
               
98-304
               

               
Cow position:
               
chr21:19240663-19240880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
104-235
               

               
Cow position:
               
chr21:17790760-17790891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
38, 98
               

               
Conread position:
               
104-269
               

               
Cow position:
               
chr21:48334589-48334757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 124
               

               
Conread position:
               
104-304
               

               
Cow position:
               
chr21:44825684-44825894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
104-317
               

               
Cow position:
               
chr21:23321877-23322093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
32, 205
               

               
Conread position:
               
104-322
               

               
Cow position:
               
chr21:5392336-5392560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
104-324
               

               
Cow position:
               
chr21:18800333-18800551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
36, 171
               

               
Conread position:
               
104-324
               

               
Cow position:
               
chr21:29014357-29014582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
31, 208
               

               
Conread position:
               
105-324
               

               
Cow position:
               
chr21:18828109-18828329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
7, 19
               

               
Conread position:
               
107-265
               

               
Cow position:
               
chr21:36682523-36682362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
107-311
               

               
Cow position:
               
chr21:28989809-28989597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
6, 23
               

               
Conread position:
               
107-323
               

               
Cow position:
               
chr21:36297686-36297469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
15, 29
               

               
Conread position:
               
107-323
               

               
Cow position:
               
chr21:36910129-36909914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
29, 147
               

               
Conread position:
               
107-323
               

               
Cow position:
               
chr21:44515468-44515242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
17, 202
               

               
Conread position:
               
107-324
               

               
Cow position:
               
chr21:27624897-27624687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
13, 153
               

               
Conread position:
               
107-324
               

               
Cow position:
               
chr21:29485176-29484957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 94
               

               
Conread position:
               
107-324
               

               
Cow position:
               
chr21:33563199-33562992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
33, 7
               

               
Conread position:
               
107-324
               

               
Cow position:
               
chr21:36795801-36795578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
33, 205
               

               
Conread position:
               
108-247
               

               
Cow position:
               
chr21:41450578-41450437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
32, 59
               

               
Conread position:
               
108-324
               

               
Cow position:
               
chr21:33916-33699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
32, 172
               

               
Conread position:
               
108-324
               

               
Cow position:
               
chr21:47363538-47363760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
16, 204
               

               
Conread position:
               
109-323
               

               
Cow position:
               
chr21:41598007-41597800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
31, 150
               

               
Conread position:
               
110-225
               

               
Cow position:
               
chr21:32272116-32271997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
110-231
               

               
Cow position:
               
chr21:30622833-30622710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
30, 98
               

               
Conread position:
               
110-232
               

               
Cow position:
               
chr21:11363861-11363736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
110-246
               

               
Cow position:
               
chr21:265815-265680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
110-251
               

               
Cow position:
               
chr21:5149395-5149247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
110-251
               

               
Cow position:
               
chr21:14228085-14228229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
110-253
               

               
Cow position:
               
chr21:8625368-8625227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
28, 82
               

               
Conread position:
               
110-253
               

               
Cow position:
               
chr21:42465977-42465829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
101, 25
               

               
Conread position:
               
110-264
               

               
Cow position:
               
chr21:41610365-41610205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
110-271
               

               
Cow position:
               
chr21:9417963-9418124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
26, 94
               

               
Conread position:
               
110-291
               

               
Cow position:
               
chr21:19359981-19360167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
110-293
               

               
Cow position:
               
chr21:30157611-30157801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
110-299
               

               
Cow position:
               
chr21:35437294-35437477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
30, 56
               

               
Conread position:
               
110-304
               

               
Cow position:
               
chr21:46132768-46132572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
110-321
               

               
Cow position:
               
chr21:13584870-13585073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
110-321
               

               
Cow position:
               
chr21:19259008-19258805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
110-321
               

               
Cow position:
               
chr21:27568977-27569184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
10, 93
               

               
Conread position:
               
110-321
               

               
Cow position:
               
chr21:33350936-33350721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
30, 144
               

               
Conread position:
               
110-322
               

               
Cow position:
               
chr21:30250009-30250216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
17, 92
               

               
Conread position:
               
110-323
               

               
Cow position:
               
chr21:471871-471656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 56
               

               
Conread position:
               
110-323
               

               
Cow position:
               
chr21:10633448-10633661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
27, 44
               

               
Conread position:
               
110-323
               

               
Cow position:
               
chr21:43259414-43259202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
32, 56
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr21:47235-47015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr21:396062-395848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
30, 107
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr21:5464937-5464725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
146, 27
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr21:10264227-10264011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 199
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr21:10514994-10514782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
25, 8
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr21:10538060-10538272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
30, 149
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr21:25628716-25628932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
5, 58
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr21:26245109-26244898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
30, 157
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr21:38692391-38692179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
30, 46
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr21:42384704-42384488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
25, 161
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr21:42841402-42841622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
30, 202
               

               
Conread position:
               
111-317
               

               
Cow position:
               
chr21:9256470-9256672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
111-322
               

               
Cow position:
               
chr21:12801555-12801772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
20, 200
               

               
Conread position:
               
111-324
               

               
Cow position:
               
chr21:11360226-11360017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
57, 23
               

               
Conread position:
               
111-324
               

               
Cow position:
               
chr21:29001963-29002180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
29, 48
               

               
Conread position:
               
111-324
               

               
Cow position:
               
chr21:32297323-32297529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
24, 149
               

               
Conread position:
               
111-324
               

               
Cow position:
               
chr21:41579950-41579734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
28, 194
               

               
Conread position:
               
111-324
               

               
Cow position:
               
chr21:45920867-45921080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
29, 7
               

               
Conread position:
               
112-255
               

               
Cow position:
               
chr21:5486318-5486467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
113-261
               

               
Cow position:
               
chr21:31147750-31147893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
113-311
               

               
Cow position:
               
chr21:30980386-30980587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 89
               

               
Conread position:
               
113-322
               

               
Cow position:
               
chr21:28733721-28733934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
26, 104
               

               
Conread position:
               
114-311
               

               
Cow position:
               
chr21:33264035-33263832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
24, 15
               

               
Conread position:
               
114-323
               

               
Cow position:
               
chr21:3818399-3818189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 50
               

               
Conread position:
               
114-324
               

               
Cow position:
               
chr21:24642703-24642498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
157, 28
               

               
Conread position:
               
115-277
               

               
Cow position:
               
chr21:2809975-2810134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
115-324
               

               
Cow position:
               
chr21:15976822-15976611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
25, 62
               

               
Conread position:
               
115-324
               

               
Cow position:
               
chr21:39888551-39888770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 200
               

               
Conread position:
               
116-270
               

               
Cow position:
               
chr21:8231492-8231645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
116-324
               

               
Cow position:
               
chr21:40192119-40192323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
117-324
               

               
Cow position:
               
chr21:12617347-12617115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
108, 214
               

               
Conread position:
               
118-262
               

               
Cow position:
               
chr21:42348511-42348651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
118-324
               

               
Cow position:
               
chr21:31662648-31662443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
146, 16
               

               
Conread position:
               
118-324
               

               
Cow position:
               
chr21:46264355-46264150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
20, 111
               

               
Conread position:
               
119-322
               

               
Cow position:
               
chr21:22465376-22465177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
29, 126
               

               
Conread position:
               
119-322
               

               
Cow position:
               
chr21:30990105-30990296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
144, 16
               

               
Conread position:
               
119-324
               

               
Cow position:
               
chr21:37235565-37235363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
131, 15
               

               
Conread position:
               
119-324
               

               
Cow position:
               
chr21:38720435-38720230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
16, 63
               

               
Conread position:
               
120-310
               

               
Cow position:
               
chr21:41046991-41046796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
20, 94
               

               
Conread position:
               
121-271
               

               
Cow position:
               
chr21:46451770-46451921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 119
               

               
Conread position:
               
121-322
               

               
Cow position:
               
chr21:6388181-6387980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
16, 155
               

               
Conread position:
               
121-324
               

               
Cow position:
               
chr21:10001259-10001053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 186
               

               
Conread position:
               
122-324
               

               
Cow position:
               
chr21:11739937-11740143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
18, 61
               

               
Conread position:
               
123-324
               

               
Cow position:
               
chr21:18844835-18845037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
143, 9
               

               
Conread position:
               
123-324
               

               
Cow position:
               
chr21:45850525-45850734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
17, 79
               

               
Conread position:
               
124-320
               

               
Cow position:
               
chr21:28191213-28191013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
16, 98
               

               
Conread position:
               
124-324
               

               
Cow position:
               
chr21:35900022-35899822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
9, 87
               

               
Conread position:
               
125-321
               

               
Cow position:
               
chr21:25764815-25764613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
14, 54
               

               
Conread position:
               
126-299
               

               
Cow position:
               
chr21:7394110-7394283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
12, 68
               

               
Conread position:
               
127-321
               

               
Cow position:
               
chr21:45915542-45915729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 72
               

               
Conread position:
               
128-324
               

               
Cow position:
               
chr21:30606911-30607111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
16, 182
               

               
Conread position:
               
129-324
               

               
Cow position:
               
chr21:724706-724908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
37, 88
               

               
Conread position:
               
130-324
               

               
Cow position:
               
chr21:33210359-33210180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
131-324
               

               
Cow position:
               
chr21:18850052-18850250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
13, 180
               

               
Conread position:
               
135-322
               

               
Cow position:
               
chr21:23800961-23801148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
118, 136
               

               
Conread position:
               
135-324
               

               
Cow position:
               
chr21:9940023-9940212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
136, 15
               

               
Conread position:
               
135-324
               

               
Cow position:
               
chr21:45356000-45355814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
137-273
               

               
Cow position:
               
chr21:12207637-12207772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
137-280
               

               
Cow position:
               
chr21:7823529-7823382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
12, 45
               

               
Conread position:
               
137-296
               

               
Cow position:
               
chr21:48083064-48083214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
137-303
               

               
Cow position:
               
chr21:7268718-7268884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
139, 67
               

               
Conread position:
               
137-317
               

               
Cow position:
               
chr21:13036741-13036915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
137-323
               

               
Cow position:
               
chr21:8235397-8235575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
137, 67
               

               
Conread position:
               
137-323
               

               
Cow position:
               
chr21:28442897-28442725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
137-324
               

               
Cow position:
               
chr21:734754-734574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
162, 47
               

               
Conread position:
               
137-324
               

               
Cow position:
               
chr21:12723316-12723135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
100, 62
               

               
Conread position:
               
137-324
               

               
Cow position:
               
chr21:35354698-35354511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
32, 130
               

               
Conread position:
               
138-246
               

               
Cow position:
               
chr21:40210885-40210992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
138-324
               

               
Cow position:
               
chr21:45262646-45262833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
134, 163
               

               
Conread position:
               
139-264
               

               
Cow position:
               
chr21:7088764-7088638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
139-323
               

               
Cow position:
               
chr21:42413934-42414122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
80, 171
               

               
Conread position:
               
139-324
               

               
Cow position:
               
chr21:20260157-20260343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
127, 8
               

               
Conread position:
               
140-309
               

               
Cow position:
               
chr21:20183233-20183064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
135, 165
               

               
Conread position:
               
140-322
               

               
Cow position:
               
chr21:42540059-42540242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
14, 164
               

               
Conread position:
               
141-322
               

               
Cow position:
               
chr21:45330446-45330621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
119, 69
               

               
Conread position:
               
141-324
               

               
Cow position:
               
chr21:20418521-20418706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
129, 167
               

               
Conread position:
               
142-322
               

               
Cow position:
               
chr21:18842077-18842261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
144-323
               

               
Cow position:
               
chr21:41878627-41878450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
124, 32
               

               
Conread position:
               
146-324
               

               
Cow position:
               
chr21:19363304-19363484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
124, 15
               

               
Conread position:
               
150-322
               

               
Cow position:
               
chr21:15611292-15611126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
115, 58
               

               
Conread position:
               
151-324
               

               
Cow position:
               
chr21:20193045-20192875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
116, 50
               

               
Conread position:
               
152-324
               

               
Cow position:
               
chr21:10089842-10090015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
111, 29
               

               
Conread position:
               
152-324
               

               
Cow position:
               
chr21:16187657-16187830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
111, 128
               

               
Conread position:
               
153-324
               

               
Cow position:
               
chr21:40432594-40432428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
155-324
               

               
Cow position:
               
chr21:18155419-18155589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
109, 124
               

               
Conread position:
               
155-324
               

               
Cow position:
               
chr21:46144106-46143936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
112, 152
               

               
Conread position:
               
158-324
               

               
Cow position:
               
chr21:36789939-36789769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
98, 152
               

               
Conread position:
               
168-323
               

               
Cow position:
               
chr21:10601241-10601401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
94, 144
               

               
Conread position:
               
172-324
               

               
Cow position:
               
chr21:13488657-13488500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 139
               

               
Conread position:
               
174-324
               

               
Cow position:
               
chr21:37384611-37384463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
176-324
               

               
Cow position:
               
chr21:17856670-17856520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
94, 132
               

               
Conread position:
               
186-323
               

               
Cow position:
               
chr21:23192393-23192535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
25, 124
               

               
Conread position:
               
191-321
               

               
Cow position:
               
chr21:44733062-44733192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
80, 115
               

               
Conread position:
               
201-324
               

               
Cow position:
               
chr21:18041746-18041870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
70, 106
               

               
Conread position:
               
206-324
               

               
Cow position:
               
chr21:41598216-41598096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
59, 104
               

               
Conread position:
               
215-324
               

               
Cow position:
               
chr21:16612712-16612602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
57, 92
               
Show alignments to all cow chromosomes.