Non-Coding RNA Search

Cow genome map


           Conread name:
           reru19c_i21.y1
        

               Conread position:
               3-237
               

               Cow position:
               chrX:11781519-11781281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               19, 58
               

               Conread position:
               3-280
               

               Cow position:
               chrX:4036907-4037188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               29, 39
               

               Conread position:
               3-320
               

               Cow position:
               chrX:41878673-41878988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               59, 26
               

               Conread position:
               4-268
               

               Cow position:
               chrX:16836017-16836289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               208
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               17, 89
               

               Conread position:
               4-324
               

               Cow position:
               chrX:20339629-20339948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               226
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               31, 12
               

               Conread position:
               5-230
               

               Cow position:
               chrX:27270649-27270410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               12, 55
               

               Conread position:
               5-248
               

               Cow position:
               chrX:47855247-47854998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               175
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               16, 11
               

               Conread position:
               5-324
               

               Cow position:
               chrX:917115-917424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               216
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               27, 104
               

               Conread position:
               5-324
               

               Cow position:
               chrX:4403579-4403256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               105, 11
               

               Conread position:
               5-324
               

               Cow position:
               chrX:10411736-10412045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               226
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               11, 83
               

               Conread position:
               6-217
               

               Cow position:
               chrX:19407472-19407686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               22, 64
               

               Conread position:
               6-302
               

               Cow position:
               chrX:19394830-19394514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               26, 87
               

               Conread position:
               6-323
               

               Cow position:
               chrX:5679310-5679623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               224
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               40, 22
               

               Conread position:
               7-268
               

               Cow position:
               chrX:39290618-39290356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 45
               

               Conread position:
               8-279
               

               Cow position:
               chrX:38218976-38218698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               196
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               30, 41
               

               Conread position:
               8-324
               

               Cow position:
               chrX:1499917-1499608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               222
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               7, 16
               

               Conread position:
               8-324
               

               Cow position:
               chrX:44962023-44961690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               31, 81
               

               Conread position:
               9-212
               

               Cow position:
               chrX:28923290-28923082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               19, 9
               

               Conread position:
               9-321
               

               Cow position:
               chrX:44192183-44192505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               223
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               54, 9
               

               Conread position:
               9-323
               

               Cow position:
               chrX:9634927-9635243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               18, 51
               

               Conread position:
               9-324
               

               Cow position:
               chrX:161665-161354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               43, 27
               

               Conread position:
               11-305
               

               Cow position:
               chrX:4289690-4289398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               219
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               213, 7
               

               Conread position:
               11-324
               

               Cow position:
               chrX:42171053-42171355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               227
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               242, 17
               

               Conread position:
               12-269
               

               Cow position:
               chrX:27074790-27075055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               41, 62
               

               Conread position:
               12-324
               

               Cow position:
               chrX:6278240-6278559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               68, 17
               

               Conread position:
               12-324
               

               Cow position:
               chrX:23513767-23514074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               224
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               25, 52
               

               Conread position:
               14-204
               

               Cow position:
               chrX:29681863-29682050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               104, 19
               

               Conread position:
               15-202
               

               Cow position:
               chrX:41215578-41215385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               12, 33
               

               Conread position:
               15-277
               

               Cow position:
               chrX:27145857-27145593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 21
               

               Conread position:
               16-251
               

               Cow position:
               chrX:38302067-38301823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               173
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               95, 18
               

               Conread position:
               16-280
               

               Cow position:
               chrX:32574569-32574305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               97, 32
               

               Conread position:
               16-324
               

               Cow position:
               chrX:35885477-35885786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               220
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               19, 7
               

               Conread position:
               17-206
               

               Cow position:
               chrX:17525621-17525808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               46, 6
               

               Conread position:
               17-254
               

               Cow position:
               chrX:35285427-35285184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               94, 31
               

               Conread position:
               17-288
               

               Cow position:
               chrX:46793498-46793770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               96, 24
               

               Conread position:
               17-323
               

               Cow position:
               chrX:34412101-34411784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 31
               

               Conread position:
               18-268
               

               Cow position:
               chrX:15546134-15545878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               93, 54
               

               Conread position:
               18-320
               

               Cow position:
               chrX:5134731-5134420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               36, 7
               

               Conread position:
               18-322
               

               Cow position:
               chrX:33001149-33000846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               204
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               120, 23
               

               Conread position:
               18-324
               

               Cow position:
               chrX:4632606-4632908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               220
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               106, 17
               

               Conread position:
               19-236
               

               Cow position:
               chrX:46910060-46909844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               56, 43
               

               Conread position:
               19-324
               

               Cow position:
               chrX:7278158-7277852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               47, 58
               

               Conread position:
               20-324
               

               Cow position:
               chrX:11633931-11633621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               110, 18
               

               Conread position:
               21-222
               

               Cow position:
               chrX:46068512-46068716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               54, 39
               

               Conread position:
               21-237
               

               Cow position:
               chrX:2314368-2314591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               38, 45
               

               Conread position:
               21-270
               

               Cow position:
               chrX:20677894-20678142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               42, 17
               

               Conread position:
               21-319
               

               Cow position:
               chrX:35986083-35985764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 151
               

               Conread position:
               21-321
               

               Cow position:
               chrX:27207047-27206753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               106, 54
               

               Conread position:
               21-324
               

               Cow position:
               chrX:24365571-24365884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               218
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               17, 52
               

               Conread position:
               22-324
               

               Cow position:
               chrX:34565536-34565222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               53, 11
               

               Conread position:
               23-246
               

               Cow position:
               chrX:31744768-31744986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               39, 25
               

               Conread position:
               23-296
               

               Cow position:
               chrX:34315774-34315484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               203
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               52, 29
               

               Conread position:
               23-296
               

               Cow position:
               chrX:41941869-41941594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               194
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               98, 24
               

               Conread position:
               23-304
               

               Cow position:
               chrX:24332030-24331739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               31, 245
               

               Conread position:
               23-324
               

               Cow position:
               chrX:20168818-20168499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               221
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               21, 303
               

               Conread position:
               23-324
               

               Cow position:
               chrX:33854975-33855292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               233
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               92, 59
               

               Conread position:
               24-321
               

               Cow position:
               chrX:7722235-7721933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               222
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               56, 117
               

               Conread position:
               25-272
               

               Cow position:
               chrX:39179988-39180240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               89, 34
               

               Conread position:
               25-311
               

               Cow position:
               chrX:45429786-45430070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               244, 23
               

               Conread position:
               26-230
               

               Cow position:
               chrX:34991603-34991399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               152
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               91, 20
               

               Conread position:
               26-249
               

               Cow position:
               chrX:20583910-20583682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               176
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               28, 58
               

               Conread position:
               26-309
               

               Cow position:
               chrX:2523452-2523722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               210
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               48, 31
               

               Conread position:
               26-323
               

               Cow position:
               chrX:25815651-25815964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               18, 37
               

               Conread position:
               26-324
               

               Cow position:
               chrX:4268821-4269120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               26, 35
               

               Conread position:
               26-324
               

               Cow position:
               chrX:11656322-11656033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 22
               

               Conread position:
               26-324
               

               Cow position:
               chrX:27511665-27511368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               110, 22
               

               Conread position:
               27-277
               

               Cow position:
               chrX:32208581-32208834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               48, 14
               

               Conread position:
               28-246
               

               Cow position:
               chrX:5026497-5026275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               29, 35
               

               Conread position:
               29-293
               

               Cow position:
               chrX:35269100-35268836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               46, 30
               

               Conread position:
               29-322
               

               Cow position:
               chrX:19469273-19469563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 33
               

               Conread position:
               30-324
               

               Cow position:
               chrX:20584556-20584265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 56
               

               Conread position:
               30-324
               

               Cow position:
               chrX:27175241-27174937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               207
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               92, 42
               

               Conread position:
               31-183
               

               Cow position:
               chrX:43028469-43028314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               121
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               80, 41
               

               Conread position:
               31-324
               

               Cow position:
               chrX:9201788-9201491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 58
               

               Conread position:
               31-324
               

               Cow position:
               chrX:33539405-33539112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               209
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               49, 61
               

               Conread position:
               33-202
               

               Cow position:
               chrX:40556225-40556396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               107, 49
               

               Conread position:
               33-250
               

               Cow position:
               chrX:908179-907961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               152
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               107, 47
               

               Conread position:
               33-277
               

               Cow position:
               chrX:3806916-3806670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               94, 39
               

               Conread position:
               33-324
               

               Cow position:
               chrX:27431673-27431973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 21
               

               Conread position:
               34-220
               

               Cow position:
               chrX:15100215-15100028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               104, 38
               

               Conread position:
               34-321
               

               Cow position:
               chrX:12290955-12290666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               81, 38
               

               Conread position:
               34-324
               

               Cow position:
               chrX:25035140-25035438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               29, 53
               

               Conread position:
               34-324
               

               Cow position:
               chrX:31729674-31729383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               197
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               99, 38
               

               Conread position:
               35-317
               

               Cow position:
               chrX:13177244-13177520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 48
               

               Conread position:
               36-304
               

               Cow position:
               chrX:27306672-27306412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               233, 11
               

               Conread position:
               37-269
               

               Cow position:
               chrX:32910332-32910101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               16, 36
               

               Conread position:
               37-324
               

               Cow position:
               chrX:42927596-42927878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 45
               

               Conread position:
               38-221
               

               Cow position:
               chrX:42875445-42875256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               35, 46
               

               Conread position:
               39-222
               

               Cow position:
               chrX:34270792-34270604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               66, 9
               

               Conread position:
               39-254
               

               Cow position:
               chrX:17524147-17524373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               158
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               13, 48
               

               Conread position:
               39-322
               

               Cow position:
               chrX:5919736-5919433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               222
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               19, 280
               

               Conread position:
               39-324
               

               Cow position:
               chrX:34836837-34837115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               207
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               99, 213
               

               Conread position:
               39-324
               

               Cow position:
               chrX:40680852-40680552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               23, 55
               

               Conread position:
               41-239
               

               Cow position:
               chrX:7910840-7911046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               34, 20
               

               Conread position:
               41-246
               

               Cow position:
               chrX:19717755-19717540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               39, 181
               

               Conread position:
               41-249
               

               Cow position:
               chrX:31480202-31479987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               28, 161
               

               Conread position:
               41-251
               

               Cow position:
               chrX:27446916-27446700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               10, 19
               

               Conread position:
               41-254
               

               Cow position:
               chrX:1122317-1122532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               18, 35
               

               Conread position:
               41-254
               

               Cow position:
               chrX:42449784-42450003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               160
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               72, 7
               

               Conread position:
               41-265
               

               Cow position:
               chrX:16984869-16984641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 51
               

               Conread position:
               41-268
               

               Cow position:
               chrX:35276215-35275983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               74, 11
               

               Conread position:
               41-272
               

               Cow position:
               chrX:42480061-42479827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 48
               

               Conread position:
               41-296
               

               Cow position:
               chrX:17956918-17956663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               21, 7
               

               Conread position:
               41-323
               

               Cow position:
               chrX:26881333-26881626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 7
               

               Conread position:
               41-323
               

               Cow position:
               chrX:42380876-42381160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 46
               

               Conread position:
               41-324
               

               Cow position:
               chrX:1466392-1466102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 11
               

               Conread position:
               41-324
               

               Cow position:
               chrX:6544474-6544197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               233, 7
               

               Conread position:
               41-324
               

               Cow position:
               chrX:9650797-9651084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               213
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               74, 46
               

               Conread position:
               41-324
               

               Cow position:
               chrX:16575342-16575064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               81, 15
               

               Conread position:
               41-324
               

               Cow position:
               chrX:29601599-29601889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 39
               

               Conread position:
               41-324
               

               Cow position:
               chrX:40685099-40685390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 31
               

               Conread position:
               41-324
               

               Cow position:
               chrX:40826521-40826810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               70, 7
               

               Conread position:
               42-254
               

               Cow position:
               chrX:4559968-4559750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               19, 46
               

               Conread position:
               42-296
               

               Cow position:
               chrX:22482460-22482731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               84, 37
               

               Conread position:
               44-275
               

               Cow position:
               chrX:4467191-4466957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               36, 17
               

               Conread position:
               44-284
               

               Cow position:
               chrX:42836410-42836164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               29, 18
               

               Conread position:
               44-321
               

               Cow position:
               chrX:27261422-27261132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               17, 43
               

               Conread position:
               44-322
               

               Cow position:
               chrX:31436700-31436421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 43
               

               Conread position:
               44-324
               

               Cow position:
               chrX:30133085-30133379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               36, 15
               

               Conread position:
               45-321
               

               Cow position:
               chrX:6407772-6407488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               199
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               28, 14
               

               Conread position:
               45-324
               

               Cow position:
               chrX:1087922-1088195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               207
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               32, 27
               

               Conread position:
               47-208
               

               Cow position:
               chrX:39642390-39642566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               140
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               30, 136
               

               Conread position:
               47-270
               

               Cow position:
               chrX:2936180-2935952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               174
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               26, 41
               

               Conread position:
               47-286
               

               Cow position:
               chrX:7179121-7178875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               175
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               30, 130
               

               Conread position:
               47-324
               

               Cow position:
               chrX:5118271-5118561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               219
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               28, 39
               

               Conread position:
               47-324
               

               Cow position:
               chrX:38964335-38964046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               211
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               33, 271
               

               Conread position:
               48-206
               

               Cow position:
               chrX:31827629-31827785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               9, 15
               

               Conread position:
               48-267
               

               Cow position:
               chrX:27668736-27668960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 38
               

               Conread position:
               48-285
               

               Cow position:
               chrX:17966561-17966322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               170
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               35, 225
               

               Conread position:
               48-324
               

               Cow position:
               chrX:4152804-4153094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 272
               

               Conread position:
               48-324
               

               Cow position:
               chrX:34377165-34376887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               27, 43
               

               Conread position:
               49-235
               

               Cow position:
               chrX:4942044-4942228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               53, 41
               

               Conread position:
               49-252
               

               Cow position:
               chrX:23089071-23088869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               31, 153
               

               Conread position:
               49-302
               

               Cow position:
               chrX:11325886-11326138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               207, 23
               

               Conread position:
               50-250
               

               Cow position:
               chrX:35659017-35658814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               61, 9
               

               Conread position:
               50-278
               

               Cow position:
               chrX:13122167-13121924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               25, 9
               

               Conread position:
               50-322
               

               Cow position:
               chrX:41674320-41674053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               185
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               76, 9
               

               Conread position:
               51-321
               

               Cow position:
               chrX:34544008-34543726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               9, 23
               

               Conread position:
               52-192
               

               Cow position:
               chrX:31279708-31279851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               112
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               73, 20
               

               Conread position:
               52-212
               

               Cow position:
               chrX:23497478-23497639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               126
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               91, 28
               

               Conread position:
               52-248
               

               Cow position:
               chrX:19761968-19761771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               88, 20
               

               Conread position:
               52-271
               

               Cow position:
               chrX:11762792-11763007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               52-293
               

               Cow position:
               chrX:4645695-4645941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               64, 20
               

               Conread position:
               52-324
               

               Cow position:
               chrX:20881742-20881996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               230, 28
               

               Conread position:
               52-324
               

               Cow position:
               chrX:26493226-26492948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               75, 20
               

               Conread position:
               52-324
               

               Cow position:
               chrX:45875609-45875334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               10, 48
               

               Conread position:
               54-291
               

               Cow position:
               chrX:32318519-32318276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               27, 8
               

               Conread position:
               54-317
               

               Cow position:
               chrX:18964603-18964876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               26, 168
               

               Conread position:
               54-320
               

               Cow position:
               chrX:6541506-6541791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               67, 271
               

               Conread position:
               54-324
               

               Cow position:
               chrX:1615838-1616103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               21, 32
               

               Conread position:
               54-324
               

               Cow position:
               chrX:14955546-14955823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               30, 196
               

               Conread position:
               55-321
               

               Cow position:
               chrX:41123261-41123006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               184
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               218, 25
               

               Conread position:
               55-321
               

               Cow position:
               chrX:41192905-41192646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               213, 18
               

               Conread position:
               56-324
               

               Cow position:
               chrX:8925909-8925642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               195
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               24, 39
               

               Conread position:
               58-190
               

               Cow position:
               chrX:231799-231943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               114
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               59-181
               

               Cow position:
               chrX:37177093-37176958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               110
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               59-199
               

               Cow position:
               chrX:6274129-6274279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               19, 146
               

               Conread position:
               59-247
               

               Cow position:
               chrX:28098534-28098344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               137
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               59-254
               

               Cow position:
               chrX:24054887-24054682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               21, 36
               

               Conread position:
               59-279
               

               Cow position:
               chrX:32942854-32943091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               59-283
               

               Cow position:
               chrX:24633912-24633664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               193
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               59-293
               

               Cow position:
               chrX:10305145-10305377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               19, 79
               

               Conread position:
               59-321
               

               Cow position:
               chrX:45968363-45968098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               21, 199
               

               Conread position:
               59-323
               

               Cow position:
               chrX:34792097-34792366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 132
               

               Conread position:
               59-324
               

               Cow position:
               chrX:918514-918786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               142, 23
               

               Conread position:
               59-324
               

               Cow position:
               chrX:11614901-11614641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               196
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               21, 64
               

               Conread position:
               59-324
               

               Cow position:
               chrX:34532737-34532462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 231
               

               Conread position:
               59-324
               

               Cow position:
               chrX:40283336-40283067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               63, 25
               

               Conread position:
               60-294
               

               Cow position:
               chrX:47650009-47650233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               79, 36
               

               Conread position:
               60-318
               

               Cow position:
               chrX:20887432-20887698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               185
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               9, 25
               

               Conread position:
               60-320
               

               Cow position:
               chrX:35224501-35224241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               197
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               18, 76
               

               Conread position:
               60-324
               

               Cow position:
               chrX:5637954-5638227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               185
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               20, 77
               

               Conread position:
               61-241
               

               Cow position:
               chrX:32867083-32866899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               150
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               12, 25
               

               Conread position:
               61-296
               

               Cow position:
               chrX:38642466-38642217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               192
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               61-317
               

               Cow position:
               chrX:39415166-39415420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               25, 37
               

               Conread position:
               61-322
               

               Cow position:
               chrX:12437070-12437327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               200
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               14, 25
               

               Conread position:
               61-324
               

               Cow position:
               chrX:6414256-6413989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               19, 142
               

               Conread position:
               61-324
               

               Cow position:
               chrX:17662397-17662652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               183
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               19, 34
               

               Conread position:
               61-324
               

               Cow position:
               chrX:30543084-30543347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               28, 21
               

               Conread position:
               62-268
               

               Cow position:
               chrX:38587633-38587846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               49, 18
               

               Conread position:
               62-273
               

               Cow position:
               chrX:42331485-42331270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               78, 18
               

               Conread position:
               62-281
               

               Cow position:
               chrX:40337123-40336893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               11, 24
               

               Conread position:
               62-282
               

               Cow position:
               chrX:26205245-26205465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               73, 18
               

               Conread position:
               62-311
               

               Cow position:
               chrX:37072598-37072348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               192
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               13, 210
               

               Conread position:
               62-321
               

               Cow position:
               chrX:14973545-14973796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               13, 24
               

               Conread position:
               62-321
               

               Cow position:
               chrX:45502347-45502089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               71, 23
               

               Conread position:
               62-322
               

               Cow position:
               chrX:22075007-22074737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 30
               

               Conread position:
               62-322
               

               Cow position:
               chrX:44055015-44054750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               11, 24
               

               Conread position:
               62-324
               

               Cow position:
               chrX:126963-126710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               208, 13
               

               Conread position:
               62-324
               

               Cow position:
               chrX:21986089-21986351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 62
               

               Conread position:
               62-324
               

               Cow position:
               chrX:37119787-37119535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               187
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               13, 58
               

               Conread position:
               62-324
               

               Cow position:
               chrX:38094314-38094580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               195
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               65, 22
               

               Conread position:
               62-324
               

               Cow position:
               chrX:46072618-46072879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               194
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               13, 24
               

               Conread position:
               69-324
               

               Cow position:
               chrX:21672765-21672497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               190
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               41, 15
               

               Conread position:
               71-324
               

               Cow position:
               chrX:31252613-31252359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               197
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               9, 115
               

               Conread position:
               71-324
               

               Cow position:
               chrX:38549647-38549388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               194
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               38, 13
               

               Conread position:
               72-211
               

               Cow position:
               chrX:25232182-25232051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               72-245
               

               Cow position:
               chrX:20340458-20340623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               72-246
               

               Cow position:
               chrX:41809975-41810149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               68, 18
               

               Conread position:
               72-249
               

               Cow position:
               chrX:35382842-35383020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               66, 12
               

               Conread position:
               72-252
               

               Cow position:
               chrX:30824185-30824000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               61, 12
               

               Conread position:
               72-268
               

               Cow position:
               chrX:11653967-11653761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               39, 12
               

               Conread position:
               72-279
               

               Cow position:
               chrX:45382861-45383059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               72-311
               

               Cow position:
               chrX:36391988-36392234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               56, 12
               

               Conread position:
               72-317
               

               Cow position:
               chrX:16762968-16762717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               59, 12
               

               Conread position:
               72-321
               

               Cow position:
               chrX:4109385-4109134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               50, 12
               

               Conread position:
               72-321
               

               Cow position:
               chrX:4399318-4399067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               191
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               52, 12
               

               Conread position:
               72-323
               

               Cow position:
               chrX:36866373-36866113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               50, 12
               

               Conread position:
               72-323
               

               Cow position:
               chrX:42246981-42247244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               56, 12
               

               Conread position:
               72-324
               

               Cow position:
               chrX:3580145-3579887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               53, 12
               

               Conread position:
               72-324
               

               Cow position:
               chrX:13868904-13868644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               53, 12
               

               Conread position:
               72-324
               

               Cow position:
               chrX:31294369-31294622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               56, 12
               

               Conread position:
               72-324
               

               Cow position:
               chrX:34554924-34554667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               51, 15
               

               Conread position:
               72-324
               

               Cow position:
               chrX:35543084-35542836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 12
               

               Conread position:
               72-324
               

               Cow position:
               chrX:37780912-37781170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 7
               

               Conread position:
               72-324
               

               Cow position:
               chrX:40035239-40035502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 12
               

               Conread position:
               72-324
               

               Cow position:
               chrX:43115348-43115093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               198
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               60, 12
               

               Conread position:
               72-324
               

               Cow position:
               chrX:44397211-44396959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               189
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               50, 12
               

               Conread position:
               73-268
               

               Cow position:
               chrX:29478921-29478721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               32, 11
               

               Conread position:
               73-317
               

               Cow position:
               chrX:36356303-36356061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               48, 17
               

               Conread position:
               76-324
               

               Cow position:
               chrX:31250585-31250328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               46, 8
               

               Conread position:
               78-279
               

               Cow position:
               chrX:25207667-25207868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               51, 8
               

               Conread position:
               79-212
               

               Cow position:
               chrX:40543335-40543468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               61, 5
               

               Conread position:
               79-324
               

               Cow position:
               chrX:16348380-16348627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               6, 125
               

               Conread position:
               80-323
               

               Cow position:
               chrX:43779673-43779904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               28, 6
               

               Conread position:
               80-324
               

               Cow position:
               chrX:4278925-4279176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               36, 82
               

               Conread position:
               80-324
               

               Cow position:
               chrX:6690067-6690315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               182
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               5, 192
               

               Conread position:
               80-324
               

               Cow position:
               chrX:40557485-40557740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               194
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               5, 209
               

               Conread position:
               81-324
               

               Cow position:
               chrX:23113474-23113219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               34, 7
               

               Conread position:
               84-190
               

               Cow position:
               chrX:43059067-43059176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               90
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               84-191
               

               Cow position:
               chrX:35029746-35029852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               109
               

               Alignm identity:
               90
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               57, 39
               

               Conread position:
               84-195
               

               Cow position:
               chrX:25420511-25420401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               95
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               40, 53
               

               Conread position:
               84-202
               

               Cow position:
               chrX:39419532-39419651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               96
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               84-205
               

               Cow position:
               chrX:42087017-42086887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               84-228
               

               Cow position:
               chrX:6480406-6480559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               121
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               84-230
               

               Cow position:
               chrX:5487759-5487897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               119
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               56, 26
               

               Conread position:
               84-234
               

               Cow position:
               chrX:29687986-29688144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               84-234
               

               Cow position:
               chrX:41858695-41858850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               42, 149
               

               Conread position:
               84-235
               

               Cow position:
               chrX:8327094-8326934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               84-239
               

               Cow position:
               chrX:23358928-23359085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               43, 120
               

               Conread position:
               84-249
               

               Cow position:
               chrX:47079817-47079643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               84-253
               

               Cow position:
               chrX:29467593-29467766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               84-259
               

               Cow position:
               chrX:41862549-41862370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               51, 146
               

               Conread position:
               84-269
               

               Cow position:
               chrX:4996777-4996581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               84-271
               

               Cow position:
               chrX:42894111-42893918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               84-271
               

               Cow position:
               chrX:46069996-46070177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               89, 45
               

               Conread position:
               84-288
               

               Cow position:
               chrX:30840730-30840515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               84-290
               

               Cow position:
               chrX:28940433-28940219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               40, 193
               

               Conread position:
               84-291
               

               Cow position:
               chrX:23188600-23188804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               52, 104
               

               Conread position:
               84-298
               

               Cow position:
               chrX:31442650-31442865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               44, 52
               

               Conread position:
               84-299
               

               Cow position:
               chrX:12979646-12979872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               84-304
               

               Cow position:
               chrX:13913264-13913027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               171
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               84-314
               

               Cow position:
               chrX:22392799-22393035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 228
               

               Conread position:
               84-315
               

               Cow position:
               chrX:20957428-20957198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               46, 179
               

               Conread position:
               84-315
               

               Cow position:
               chrX:41871246-41871015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               186, 16
               

               Conread position:
               84-317
               

               Cow position:
               chrX:34504864-34505103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               184
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               42, 73
               

               Conread position:
               84-321
               

               Cow position:
               chrX:28865815-28866061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               27, 133
               

               Conread position:
               84-321
               

               Cow position:
               chrX:29544693-29544931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               57, 189
               

               Conread position:
               84-321
               

               Cow position:
               chrX:41238173-41238409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               56, 31
               

               Conread position:
               84-323
               

               Cow position:
               chrX:1360271-1360028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               55, 226
               

               Conread position:
               84-323
               

               Cow position:
               chrX:8869215-8869462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 230
               

               Conread position:
               84-323
               

               Cow position:
               chrX:9251974-9252220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 175
               

               Conread position:
               84-324
               

               Cow position:
               chrX:4515877-4515625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               196
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               42, 98
               

               Conread position:
               84-324
               

               Cow position:
               chrX:7648224-7648460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               31, 177
               

               Conread position:
               84-324
               

               Cow position:
               chrX:12095582-12095832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               28, 204
               

               Conread position:
               84-324
               

               Cow position:
               chrX:13647595-13647844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 225
               

               Conread position:
               84-324
               

               Cow position:
               chrX:22115126-22115375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 229
               

               Conread position:
               84-324
               

               Cow position:
               chrX:34314210-34313970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 170
               

               Conread position:
               84-324
               

               Cow position:
               chrX:35413787-35413561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               226, 50
               

               Conread position:
               84-324
               

               Cow position:
               chrX:35822522-35822284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               38, 103
               

               Conread position:
               84-324
               

               Cow position:
               chrX:45977114-45976863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 235
               

               Conread position:
               84-324
               

               Cow position:
               chrX:46291330-46291079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               46, 67
               

               Conread position:
               85-204
               

               Cow position:
               chrX:4750148-4750271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               40, 75
               

               Conread position:
               85-207
               

               Cow position:
               chrX:14135863-14135736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               103
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               85-270
               

               Cow position:
               chrX:10252014-10252203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               42, 120
               

               Conread position:
               85-274
               

               Cow position:
               chrX:45699792-45699980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               144
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               55, 103
               

               Conread position:
               85-280
               

               Cow position:
               chrX:12972866-12972666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               155
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               85-300
               

               Cow position:
               chrX:35431053-35431281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               42, 65
               

               Conread position:
               85-321
               

               Cow position:
               chrX:17795168-17794921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               185
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               33, 232
               

               Conread position:
               85-322
               

               Cow position:
               chrX:29050431-29050190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 122
               

               Conread position:
               85-324
               

               Cow position:
               chrX:38654265-38654491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               169
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               181, 19
               

               Conread position:
               85-324
               

               Cow position:
               chrX:45649058-45648814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               117, 28
               

               Conread position:
               85-324
               

               Cow position:
               chrX:47345518-47345275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               40, 180
               

               Conread position:
               86-223
               

               Cow position:
               chrX:23471681-23471824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               86-304
               

               Cow position:
               chrX:24749274-24749047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               40, 123
               

               Conread position:
               86-321
               

               Cow position:
               chrX:38560737-38560502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               167, 43
               

               Conread position:
               87-244
               

               Cow position:
               chrX:44991231-44991392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               39, 103
               

               Conread position:
               87-324
               

               Cow position:
               chrX:17888244-17888477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               169
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               53, 20
               

               Conread position:
               88-316
               

               Cow position:
               chrX:47061572-47061341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               165, 41
               

               Conread position:
               88-323
               

               Cow position:
               chrX:14275563-14275804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 196
               

               Conread position:
               90-241
               

               Cow position:
               chrX:37062407-37062561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               118
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               52, 8
               

               Conread position:
               90-247
               

               Cow position:
               chrX:34508721-34508562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               122
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               50, 7
               

               Conread position:
               90-321
               

               Cow position:
               chrX:878201-878439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 223
               

               Conread position:
               90-324
               

               Cow position:
               chrX:46532307-46532560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               32, 228
               

               Conread position:
               92-292
               

               Cow position:
               chrX:4768909-4768714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               32, 125
               

               Conread position:
               92-324
               

               Cow position:
               chrX:15006978-15007208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               160
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               182, 41
               

               Conread position:
               92-324
               

               Cow position:
               chrX:16416684-16416449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               68, 84
               

               Conread position:
               95-323
               

               Cow position:
               chrX:47873158-47873394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               17, 195
               

               Conread position:
               95-324
               

               Cow position:
               chrX:12309207-12309444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               24, 208
               

               Conread position:
               96-318
               

               Cow position:
               chrX:45110828-45110603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               169
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               44, 186
               

               Conread position:
               98-324
               

               Cow position:
               chrX:37232576-37232354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               7, 155
               

               Conread position:
               98-324
               

               Cow position:
               chrX:41068895-41068662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               38, 214
               

               Conread position:
               99-302
               

               Cow position:
               chrX:6599609-6599822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               172
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               12, 188
               

               Conread position:
               100-324
               

               Cow position:
               chrX:30337789-30338005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               36, 93
               

               Conread position:
               103-320
               

               Cow position:
               chrX:44339160-44339379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               33, 107
               

               Conread position:
               104-251
               

               Cow position:
               chrX:47342279-47342130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               110
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               31, 111
               

               Conread position:
               104-254
               

               Cow position:
               chrX:9416520-9416672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               116
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               34, 136
               

               Conread position:
               104-321
               

               Cow position:
               chrX:32623734-32623511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               36, 208
               

               Conread position:
               104-324
               

               Cow position:
               chrX:8797413-8797194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               35, 106
               

               Conread position:
               104-324
               

               Cow position:
               chrX:14599698-14599474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               21, 47
               

               Conread position:
               104-324
               

               Cow position:
               chrX:15820758-15820538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               31, 21
               

               Conread position:
               104-324
               

               Cow position:
               chrX:33493937-33493718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               29, 19
               

               Conread position:
               104-324
               

               Cow position:
               chrX:33640139-33639914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               36, 207
               

               Conread position:
               104-324
               

               Cow position:
               chrX:41884248-41884473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               171
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               34, 205
               

               Conread position:
               106-319
               

               Cow position:
               chrX:6265437-6265653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               36, 98
               

               Conread position:
               106-323
               

               Cow position:
               chrX:45414143-45414358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               20, 162
               

               Conread position:
               107-304
               

               Cow position:
               chrX:40531882-40532084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               166
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               107-321
               

               Cow position:
               chrX:42492363-42492575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               29, 49
               

               Conread position:
               107-324
               

               Cow position:
               chrX:39220234-39220021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               158, 28
               

               Conread position:
               108-324
               

               Cow position:
               chrX:47186171-47186378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               153
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               109-324
               

               Cow position:
               chrX:7710379-7710597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               10, 199
               

               Conread position:
               110-237
               

               Cow position:
               chrX:40046424-40046547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               99
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               110-262
               

               Cow position:
               chrX:38226952-38227104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               115
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               26, 54
               

               Conread position:
               110-268
               

               Cow position:
               chrX:12191918-12191758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               27, 88
               

               Conread position:
               110-279
               

               Cow position:
               chrX:36848421-36848592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               140
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               30, 96
               

               Conread position:
               110-293
               

               Cow position:
               chrX:23498522-23498707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               30, 92
               

               Conread position:
               110-296
               

               Cow position:
               chrX:23785806-23785617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               21, 74
               

               Conread position:
               110-296
               

               Cow position:
               chrX:37129427-37129235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               110-296
               

               Cow position:
               chrX:37489876-37489691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               30, 46
               

               Conread position:
               110-321
               

               Cow position:
               chrX:4043709-4043916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               29, 92
               

               Conread position:
               110-321
               

               Cow position:
               chrX:10516411-10516194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               36, 202
               

               Conread position:
               110-321
               

               Cow position:
               chrX:32977928-32978133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               30, 99
               

               Conread position:
               110-321
               

               Cow position:
               chrX:38208387-38208599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               30, 47
               

               Conread position:
               110-322
               

               Cow position:
               chrX:169388-169602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               167
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               26, 109
               

               Conread position:
               110-322
               

               Cow position:
               chrX:7695906-7695686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               170
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               30, 91
               

               Conread position:
               110-322
               

               Cow position:
               chrX:40108360-40108573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               30, 181
               

               Conread position:
               110-323
               

               Cow position:
               chrX:8731251-8731029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               26, 50
               

               Conread position:
               110-323
               

               Cow position:
               chrX:32821186-32820972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               30, 112
               

               Conread position:
               110-324
               

               Cow position:
               chrX:616106-616321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               170
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               18, 26
               

               Conread position:
               110-324
               

               Cow position:
               chrX:618854-619063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               175
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               161, 62
               

               Conread position:
               110-324
               

               Cow position:
               chrX:5017263-5017473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               165
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               24, 59
               

               Conread position:
               110-324
               

               Cow position:
               chrX:9365518-9365734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               165
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               30, 181
               

               Conread position:
               110-324
               

               Cow position:
               chrX:11084905-11085115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               19, 71
               

               Conread position:
               110-324
               

               Cow position:
               chrX:13382481-13382271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               29, 86
               

               Conread position:
               110-324
               

               Cow position:
               chrX:17726134-17725915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 200
               

               Conread position:
               110-324
               

               Cow position:
               chrX:18272903-18273117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               159, 89
               

               Conread position:
               110-324
               

               Cow position:
               chrX:18694776-18694983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               110-324
               

               Cow position:
               chrX:27393868-27394079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               168
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               30, 158
               

               Conread position:
               110-324
               

               Cow position:
               chrX:29680102-29680319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               20, 199
               

               Conread position:
               110-324
               

               Cow position:
               chrX:34402164-34401939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               27, 207
               

               Conread position:
               110-324
               

               Cow position:
               chrX:34503080-34502863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               24, 156
               

               Conread position:
               110-324
               

               Cow position:
               chrX:38006614-38006823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 10
               

               Conread position:
               110-324
               

               Cow position:
               chrX:40269652-40269429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               175
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               26, 204
               

               Conread position:
               110-324
               

               Cow position:
               chrX:42855616-42855396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               30, 199
               

               Conread position:
               110-324
               

               Cow position:
               chrX:43730066-43730277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               30, 121
               

               Conread position:
               111-251
               

               Cow position:
               chrX:35387769-35387910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               110
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               25, 90
               

               Conread position:
               111-321
               

               Cow position:
               chrX:20697454-20697666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               27, 157
               

               Conread position:
               111-322
               

               Cow position:
               chrX:5135363-5135582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               31, 202
               

               Conread position:
               111-322
               

               Cow position:
               chrX:41526372-41526584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               177
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               27, 66
               

               Conread position:
               111-324
               

               Cow position:
               chrX:11717626-11717847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               29, 203
               

               Conread position:
               111-324
               

               Cow position:
               chrX:48014592-48014376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               29, 200
               

               Conread position:
               112-224
               

               Cow position:
               chrX:31983429-31983544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               101
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               112-267
               

               Cow position:
               chrX:46989449-46989603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               119
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               28, 99
               

               Conread position:
               112-279
               

               Cow position:
               chrX:31626823-31626985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               28, 13
               

               Conread position:
               112-324
               

               Cow position:
               chrX:23562013-23561802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               6, 147
               

               Conread position:
               112-324
               

               Cow position:
               chrX:24424245-24424447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               24, 146
               

               Conread position:
               113-253
               

               Cow position:
               chrX:23266569-23266427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               27, 15
               

               Conread position:
               113-303
               

               Cow position:
               chrX:29553441-29553246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               11, 183
               

               Conread position:
               113-324
               

               Cow position:
               chrX:19097065-19097281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               20, 78
               

               Conread position:
               113-324
               

               Cow position:
               chrX:46433647-46433432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               114-235
               

               Cow position:
               chrX:41939978-41939853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               114-266
               

               Cow position:
               chrX:29501730-29501882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               26, 124
               

               Conread position:
               114-285
               

               Cow position:
               chrX:25412059-25411886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               114-322
               

               Cow position:
               chrX:23092027-23091811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               170
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               22, 186
               

               Conread position:
               115-275
               

               Cow position:
               chrX:42160776-42160617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               25, 87
               

               Conread position:
               115-321
               

               Cow position:
               chrX:11082468-11082676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               5, 190
               

               Conread position:
               115-323
               

               Cow position:
               chrX:31312182-31311971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 196
               

               Conread position:
               115-324
               

               Cow position:
               chrX:39558196-39558409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               17, 67
               

               Conread position:
               116-246
               

               Cow position:
               chrX:7513636-7513507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               116-274
               

               Cow position:
               chrX:29733441-29733602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               116-323
               

               Cow position:
               chrX:23562784-23562577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               26, 187
               

               Conread position:
               116-324
               

               Cow position:
               chrX:22387098-22387301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               20, 92
               

               Conread position:
               117-323
               

               Cow position:
               chrX:22914891-22915094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               23, 54
               

               Conread position:
               119-249
               

               Cow position:
               chrX:41164760-41164630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               21, 83
               

               Conread position:
               119-324
               

               Cow position:
               chrX:42235376-42235587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               21, 10
               

               Conread position:
               120-324
               

               Cow position:
               chrX:5900610-5900410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               20, 92
               

               Conread position:
               121-290
               

               Cow position:
               chrX:4615865-4616035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               19, 8
               

               Conread position:
               123-311
               

               Cow position:
               chrX:11938791-11938981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               101, 152
               

               Conread position:
               123-314
               

               Cow position:
               chrX:19943091-19943286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               17, 66
               

               Conread position:
               124-321
               

               Cow position:
               chrX:11856571-11856373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               148, 177
               

               Conread position:
               124-324
               

               Cow position:
               chrX:45670364-45670162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               14, 192
               

               Conread position:
               128-321
               

               Cow position:
               chrX:37574977-37574788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               154
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               143, 0
               

               Conread position:
               129-243
               

               Cow position:
               chrX:4617262-4617376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               91
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               129-315
               

               Cow position:
               chrX:29115843-29115661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               134
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               9, 69
               

               Conread position:
               129-323
               

               Cow position:
               chrX:42469805-42470000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               87, 181
               

               Conread position:
               130-254
               

               Cow position:
               chrX:37665826-37665702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               97
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               130-323
               

               Cow position:
               chrX:11851544-11851727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               74, 35
               

               Conread position:
               135-323
               

               Cow position:
               chrX:11454919-11455105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               121, 47
               

               Conread position:
               135-323
               

               Cow position:
               chrX:31515304-31515111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               70, 170
               

               Conread position:
               135-324
               

               Cow position:
               chrX:29194360-29194175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               22, 59
               

               Conread position:
               135-324
               

               Cow position:
               chrX:32431754-32431562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               118, 150
               

               Conread position:
               136-254
               

               Cow position:
               chrX:42481602-42481720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               96
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               137-235
               

               Cow position:
               chrX:29331867-29331965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               99
               

               Alignm identity:
               87
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               137-239
               

               Cow position:
               chrX:21573700-21573599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               103
               

               Alignm identity:
               90
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               137-291
               

               Cow position:
               chrX:20743732-20743575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               116
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               137-296
               

               Cow position:
               chrX:19690343-19690186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               137-302
               

               Cow position:
               chrX:12082196-12082363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               121, 68
               

               Conread position:
               137-302
               

               Cow position:
               chrX:29585247-29585082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               133
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               137-317
               

               Cow position:
               chrX:19273579-19273766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               137-318
               

               Cow position:
               chrX:25328488-25328659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               137-322
               

               Cow position:
               chrX:37986353-37986170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               133, 49
               

               Conread position:
               137-322
               

               Cow position:
               chrX:38066327-38066513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               128, 157
               

               Conread position:
               137-322
               

               Cow position:
               chrX:45174978-45174791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               143, 170
               

               Conread position:
               137-324
               

               Cow position:
               chrX:29230127-29229951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               137-324
               

               Cow position:
               chrX:36068143-36067954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               122, 171
               

               Conread position:
               137-324
               

               Cow position:
               chrX:36514764-36514953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               55, 171
               

               Conread position:
               137-324
               

               Cow position:
               chrX:38853325-38853139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               133, 63
               

               Conread position:
               137-324
               

               Cow position:
               chrX:43568047-43567863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               137-324
               

               Cow position:
               chrX:46429691-46429880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               157
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               133, 170
               

               Conread position:
               137-324
               

               Cow position:
               chrX:48044388-48044572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               138-269
               

               Cow position:
               chrX:25788778-25788909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               138-324
               

               Cow position:
               chrX:7572033-7571844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               13, 8
               

               Conread position:
               138-324
               

               Cow position:
               chrX:11073064-11073251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               128, 163
               

               Conread position:
               138-324
               

               Cow position:
               chrX:11317842-11318026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               121, 15
               

               Conread position:
               138-324
               

               Cow position:
               chrX:29289704-29289520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               129, 15
               

               Conread position:
               139-263
               

               Cow position:
               chrX:48683294-48683418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               94
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               139-321
               

               Cow position:
               chrX:17542084-17541902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               40, 21
               

               Conread position:
               139-324
               

               Cow position:
               chrX:45846227-45846040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               139, 89
               

               Conread position:
               144-324
               

               Cow position:
               chrX:25338307-25338126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               117, 9
               

               Conread position:
               146-250
               

               Cow position:
               chrX:6213989-6213885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               105
               

               Alignm identity:
               85
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               146-318
               

               Cow position:
               chrX:47362504-47362676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               139, 161
               

               Conread position:
               149-321
               

               Cow position:
               chrX:26625555-26625732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               106, 162
               

               Conread position:
               151-324
               

               Cow position:
               chrX:45403711-45403886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               66, 88
               

               Conread position:
               152-324
               

               Cow position:
               chrX:7509252-7509083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               106, 38
               

               Conread position:
               152-324
               

               Cow position:
               chrX:21566520-21566345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               113, 157
               

               Conread position:
               156-320
               

               Cow position:
               chrX:27680507-27680340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               99, 153
               

               Conread position:
               165-322
               

               Cow position:
               chrX:27685349-27685191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               22, 142
               

               Conread position:
               169-313
               

               Cow position:
               chrX:44095356-44095209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               113
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               184-323
               

               Cow position:
               chrX:11589507-11589645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               106
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               98, 82
               

               Conread position:
               192-324
               

               Cow position:
               chrX:13785287-13785422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               73, 117
               

               Conread position:
               195-324
               

               Cow position:
               chrX:26875811-26875942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               109
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               75, 113
               
Show alignments to all cow chromosomes.
Conread position:	3-237
Cow position:	chrX:11781519-11781281 (view UCSC Genome Browser custom track)
Alignm length:	241
Alignm identity:	160
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	19, 58
Conread position:	3-280
Cow position:	chrX:4036907-4037188 (view UCSC Genome Browser custom track)
Alignm length:	285
Alignm identity:	184
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	29, 39
Conread position:	3-320
Cow position:	chrX:41878673-41878988 (view UCSC Genome Browser custom track)
Alignm length:	327
Alignm identity:	215
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	59, 26
Conread position:	4-268
Cow position:	chrX:16836017-16836289 (view UCSC Genome Browser custom track)
Alignm length:	277
Alignm identity:	208
Alignm E-value:	5.60519e-45
Alignm gaps (pig, cow):	17, 89
Conread position:	4-324
Cow position:	chrX:20339629-20339948 (view UCSC Genome Browser custom track)
Alignm length:	332
Alignm identity:	226
Alignm E-value:	4e-31
Alignm gaps (pig, cow):	31, 12
Conread position:	5-230
Cow position:	chrX:27270649-27270410 (view UCSC Genome Browser custom track)
Alignm length:	241
Alignm identity:	169
Alignm E-value:	2e-26
Alignm gaps (pig, cow):	12, 55
Conread position:	5-248
Cow position:	chrX:47855247-47854998 (view UCSC Genome Browser custom track)
Alignm length:	253
Alignm identity:	175
Alignm E-value:	8e-28
Alignm gaps (pig, cow):	16, 11
Conread position:	5-324
Cow position:	chrX:917115-917424 (view UCSC Genome Browser custom track)
Alignm length:	324
Alignm identity:	216
Alignm E-value:	9e-29
Alignm gaps (pig, cow):	27, 104
Conread position:	6-217
Cow position:	chrX:19407472-19407686 (view UCSC Genome Browser custom track)
Alignm length:	218
Alignm identity:	151
Alignm E-value:	5e-23
Alignm gaps (pig, cow):	22, 64
Conread position:	6-302
Cow position:	chrX:19394830-19394514 (view UCSC Genome Browser custom track)
Alignm length:	318
Alignm identity:	226
Alignm E-value:	1e-39
Alignm gaps (pig, cow):	26, 87
Conread position:	6-323
Cow position:	chrX:5679310-5679623 (view UCSC Genome Browser custom track)
Alignm length:	326
Alignm identity:	224
Alignm E-value:	4e-32
Alignm gaps (pig, cow):	40, 22
Conread position:	7-268
Cow position:	chrX:39290618-39290356 (view UCSC Genome Browser custom track)
Alignm length:	266
Alignm identity:	197
Alignm E-value:	0
Alignm gaps (pig, cow):	70, 45
Conread position:	8-279
Cow position:	chrX:38218976-38218698 (view UCSC Genome Browser custom track)
Alignm length:	283
Alignm identity:	196
Alignm E-value:	4e-31
Alignm gaps (pig, cow):	30, 41
Conread position:	8-324
Cow position:	chrX:1499917-1499608 (view UCSC Genome Browser custom track)
Alignm length:	320
Alignm identity:	222
Alignm E-value:	3e-39
Alignm gaps (pig, cow):	7, 16
Conread position:	9-212
Cow position:	chrX:28923290-28923082 (view UCSC Genome Browser custom track)
Alignm length:	211
Alignm identity:	148
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	19, 9
Conread position:	9-321
Cow position:	chrX:44192183-44192505 (view UCSC Genome Browser custom track)
Alignm length:	330
Alignm identity:	223
Alignm E-value:	9e-29
Alignm gaps (pig, cow):	54, 9
Conread position:	9-323
Cow position:	chrX:9634927-9635243 (view UCSC Genome Browser custom track)
Alignm length:	327
Alignm identity:	224
Alignm E-value:	1e-32
Alignm gaps (pig, cow):	18, 51
Conread position:	9-324
Cow position:	chrX:161665-161354 (view UCSC Genome Browser custom track)
Alignm length:	320
Alignm identity:	218
Alignm E-value:	2e-36
Alignm gaps (pig, cow):	43, 27
Conread position:	11-305
Cow position:	chrX:4289690-4289398 (view UCSC Genome Browser custom track)
Alignm length:	301
Alignm identity:	219
Alignm E-value:	1.96182e-44
Alignm gaps (pig, cow):	213, 7
Conread position:	11-324
Cow position:	chrX:42171053-42171355 (view UCSC Genome Browser custom track)
Alignm length:	318
Alignm identity:	227
Alignm E-value:	9.99995e-41
Alignm gaps (pig, cow):	242, 17