Cow genome map
| Conread name: | reye1614b_d12.y1 |
| Conread position: | 1-172 |
| Cow position: | chr25:36801796-36801967 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 141, 135 |
| Conread position: | 1-177 |
| Cow position: | chr25:327092-327268 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 23 |
| Conread position: | 1-207 |
| Cow position: | chr25:34770039-34769833 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-208 |
| Cow position: | chr25:33157304-33157097 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 124, 129 |
| Conread position: | 1-209 |
| Cow position: | chr25:34769451-34769243 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-233 |
| Cow position: | chr25:23420552-23420784 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 62, 46 |
| Conread position: | 1-235 |
| Cow position: | chr25:33145183-33145417 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 58, 63 |
| Conread position: | 1-235 |
| Cow position: | chr25:33305150-33304919 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 105, 33 |
| Conread position: | 1-238 |
| Cow position: | chr25:36801460-36801697 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-241 |
| Cow position: | chr25:33299656-33299889 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 122, 126 |
| Conread position: | 1-244 |
| Cow position: | chr25:33299068-33299311 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 122, 126 |
| Conread position: | 1-244 |
| Cow position: | chr25:33299488-33299731 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-244 |
| Cow position: | chr25:33299572-33299815 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 18, 24 |
| Conread position: | 1-244 |
| Cow position: | chr25:33305717-33305473 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 228, 0 |
| Conread position: | 1-244 |
| Cow position: | chr25:33305961-33305722 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-244 |
| Cow position: | chr25:36801712-36801955 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-245 |
| Cow position: | chr25:36801544-36801788 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-247 |
| Cow position: | chr25:23420384-23420630 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-247 |
| Cow position: | chr25:33127803-33128049 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-247 |
| Cow position: | chr25:33127887-33128133 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 77, 84 |
| Conread position: | 1-247 |
| Cow position: | chr25:33127971-33128217 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 122, 129 |
| Conread position: | 1-247 |
| Cow position: | chr25:33157052-33156806 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-247 |
| Cow position: | chr25:33157136-33156890 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 196, 211 |
| Conread position: | 1-247 |
| Cow position: | chr25:33157388-33157142 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 124, 128 |
| Conread position: | 1-247 |
| Cow position: | chr25:33298816-33299062 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-247 |
| Cow position: | chr25:34447275-34447521 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-247 |
| Cow position: | chr25:34769619-34769373 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 146, 135 |
| Conread position: | 1-247 |
| Cow position: | chr25:34769787-34769541 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 24, 20 |
| Conread position: | 1-247 |
| Cow position: | chr25:34769955-34769709 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-248 |
| Cow position: | chr25:33298480-33298727 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 215, 221 |
| Conread position: | 1-248 |
| Cow position: | chr25:33298648-33298895 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 122, 126 |
| Conread position: | 1-248 |
| Cow position: | chr25:33298732-33298979 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-248 |
| Cow position: | chr25:33299236-33299483 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 36, 28 |
| Conread position: | 1-248 |
| Cow position: | chr25:33299404-33299651 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 186, 199 |
| Conread position: | 1-248 |
| Cow position: | chr25:33305318-33305075 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 24, 18 |
| Conread position: | 1-248 |
| Cow position: | chr25:33305401-33305155 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 1-248 |
| Cow position: | chr25:33305797-33305554 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 204, 78 |
| Conread position: | 1-248 |
| Cow position: | chr25:34447443-34447690 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 63, 42 |
| Conread position: | 1-248 |
| Cow position: | chr25:34769535-34769288 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-248 |
| Cow position: | chr25:36800716-36800963 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-248 |
| Cow position: | chr25:36800800-36801047 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-248 |
| Cow position: | chr25:36800884-36801131 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 207, 221 |
| Conread position: | 1-248 |
| Cow position: | chr25:36801628-36801875 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 18, 24 |
| Conread position: | 2-244 |
| Cow position: | chr25:33298565-33298807 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-248 |
| Cow position: | chr25:33299321-33299567 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-248 |
| Cow position: | chr25:36800633-36800879 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-170 |
| Cow position: | chr25:346619-346786 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-244 |
| Cow position: | chr25:23420638-23420879 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-247 |
| Cow position: | chr25:22235832-22236076 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 40 |
| Conread position: | 3-247 |
| Cow position: | chr25:34769701-34769457 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 22, 18 |
| Conread position: | 3-248 |
| Cow position: | chr25:23420470-23420715 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-248 |
| Cow position: | chr25:34769869-34769624 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-177 |
| Cow position: | chr25:34447531-34447703 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-244 |
| Cow position: | chr25:36800972-36801211 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 117, 124 |
| Conread position: | 6-247 |
| Cow position: | chr25:346454-346695 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 18 |
| Conread position: | 15-247 |
| Cow position: | chr25:34770109-34769877 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-247 |
| Cow position: | chr25:23420316-23420546 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-240 |
| Cow position: | chr25:33127741-33127958 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 164, 177 |
| Conread position: | 24-247 |
| Cow position: | chr25:326947-327170 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 121, 111 |
| Conread position: | 30-248 |
| Cow position: | chr25:34447220-34447438 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 55 |
| Conread position: | 32-245 |
| Cow position: | chr25:36800579-36800792 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.