Cow genome map
| Conread name: | reye1618b_o19r1.y1 |
| Conread position: | 1-138 |
| Cow position: | chr1:70310043-70309898 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-147 |
| Cow position: | chr1:90862285-90862131 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 26, 46 |
| Conread position: | 1-163 |
| Cow position: | chr1:89399131-89398965 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 1-190 |
| Cow position: | chr1:5376819-5376621 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 1-192 |
| Cow position: | chr1:90971733-90971926 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 75 |
| Conread position: | 1-196 |
| Cow position: | chr1:22442452-22442655 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 26, 45 |
| Conread position: | 1-197 |
| Cow position: | chr1:101657086-101657286 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 19, 103 |
| Conread position: | 1-199 |
| Cow position: | chr1:22605521-22605724 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 25, 49 |
| Conread position: | 1-199 |
| Cow position: | chr1:25222820-25223017 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 1-210 |
| Cow position: | chr1:46283414-46283630 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-219 |
| Cow position: | chr1:2529963-2529739 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 27, 187 |
| Conread position: | 1-223 |
| Cow position: | chr1:100077612-100077390 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 1-224 |
| Cow position: | chr1:46241529-46241757 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 68, 44 |
| Conread position: | 1-232 |
| Cow position: | chr1:93579797-93580031 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 26, 120 |
| Conread position: | 1-248 |
| Cow position: | chr1:78060225-78060476 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 1-251 |
| Cow position: | chr1:91819381-91819636 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 55, 20 |
| Conread position: | 1-265 |
| Cow position: | chr1:17467437-17467709 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 24, 47 |
| Conread position: | 1-274 |
| Cow position: | chr1:76660328-76660615 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 25, 44 |
| Conread position: | 1-274 |
| Cow position: | chr1:91977131-91977419 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 1-274 |
| Cow position: | chr1:93571527-93571805 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 24, 44 |
| Conread position: | 1-275 |
| Cow position: | chr1:13797946-13797662 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 24, 49 |
| Conread position: | 1-276 |
| Cow position: | chr1:81468991-81469265 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 63, 118 |
| Conread position: | 1-277 |
| Cow position: | chr1:47636287-47636005 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 24, 37 |
| Conread position: | 1-281 |
| Cow position: | chr1:70256774-70256489 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 1-291 |
| Cow position: | chr1:8319272-8318985 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 20 |
| Conread position: | 1-291 |
| Cow position: | chr1:83789917-83790198 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 63, 172 |
| Conread position: | 1-306 |
| Cow position: | chr1:89093789-89093494 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 26, 108 |
| Conread position: | 1-307 |
| Cow position: | chr1:60452311-60452622 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 50 |
| Conread position: | 1-307 |
| Cow position: | chr1:82420338-82420649 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 1-307 |
| Cow position: | chr1:91840766-91841073 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 1-321 |
| Cow position: | chr1:93429889-93429569 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 2-223 |
| Cow position: | chr1:91995206-91994980 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 23, 46 |
| Conread position: | 2-291 |
| Cow position: | chr1:9153393-9153096 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 25, 46 |
| Conread position: | 3-185 |
| Cow position: | chr1:102310907-102310717 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 24, 45 |
| Conread position: | 3-307 |
| Cow position: | chr1:3103349-3103040 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 23, 8 |
| Conread position: | 4-227 |
| Cow position: | chr1:16984298-16984069 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 150 |
| Conread position: | 4-307 |
| Cow position: | chr1:4269488-4269186 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 5-267 |
| Cow position: | chr1:92056394-92056139 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 22, 147 |
| Conread position: | 11-161 |
| Cow position: | chr1:14382731-14382575 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 34 |
| Conread position: | 21-189 |
| Cow position: | chr1:57892901-57893070 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 68, 24 |
| Conread position: | 24-151 |
| Cow position: | chr1:31116997-31117125 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 62, 21 |
| Conread position: | 24-223 |
| Cow position: | chr1:82422785-82422990 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 36, 20 |
| Conread position: | 24-321 |
| Cow position: | chr1:6971783-6972081 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 25-185 |
| Cow position: | chr1:66990040-66990204 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 26-276 |
| Cow position: | chr1:9147708-9147451 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 207 |
| Conread position: | 27-282 |
| Cow position: | chr1:102311650-102311391 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 200 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 49-321 |
| Cow position: | chr1:31114213-31114490 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 15, 67 |
| Conread position: | 63-210 |
| Cow position: | chr1:44128889-44129039 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 13, 122 |
| Conread position: | 63-264 |
| Cow position: | chr1:24229884-24229683 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 25, 126 |
| Conread position: | 73-321 |
| Cow position: | chr1:29004794-29004552 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 108, 100 |
| Conread position: | 76-321 |
| Cow position: | chr1:93129261-93129503 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 94, 153 |
| Conread position: | 84-306 |
| Cow position: | chr1:69382366-69382586 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 97, 81 |
| Conread position: | 84-321 |
| Cow position: | chr1:80193538-80193772 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 93, 165 |
| Conread position: | 93-311 |
| Cow position: | chr1:5762706-5762919 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 62, 105 |
| Conread position: | 138-293 |
| Cow position: | chr1:90862006-90861859 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
Show alignments to all cow chromosomes.