Cow genome map
| Conread name: | reye1618b_o19r1.y1 |
| Conread position: | 1-167 |
| Cow position: | chr11:18139118-18139293 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 1-193 |
| Cow position: | chr11:58355779-58355583 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 1-193 |
| Cow position: | chr11:59989252-59989462 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-199 |
| Cow position: | chr11:63283358-63283151 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 19, 48 |
| Conread position: | 1-199 |
| Cow position: | chr11:75129591-75129800 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 48 |
| Conread position: | 1-222 |
| Cow position: | chr11:6752999-6752773 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 64, 44 |
| Conread position: | 1-226 |
| Cow position: | chr11:61469610-61469375 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 24, 52 |
| Conread position: | 1-243 |
| Cow position: | chr11:3743995-3743744 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 153 |
| Conread position: | 1-243 |
| Cow position: | chr11:45492603-45492363 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 172 |
| Conread position: | 1-248 |
| Cow position: | chr11:433350-433102 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 12, 46 |
| Conread position: | 1-273 |
| Cow position: | chr11:31816160-31815901 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 27, 21 |
| Conread position: | 1-273 |
| Cow position: | chr11:37318581-37318303 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 19, 44 |
| Conread position: | 1-273 |
| Cow position: | chr11:75202358-75202639 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 64, 43 |
| Conread position: | 1-274 |
| Cow position: | chr11:30474157-30473879 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 209 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 26, 161 |
| Conread position: | 1-274 |
| Cow position: | chr11:64035310-64035028 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 26, 156 |
| Conread position: | 1-274 |
| Cow position: | chr11:86667229-86666949 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 64, 195 |
| Conread position: | 1-291 |
| Cow position: | chr11:47885089-47884789 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 1-293 |
| Cow position: | chr11:3612599-3612315 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 44 |
| Conread position: | 1-296 |
| Cow position: | chr11:8557401-8557088 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 26, 173 |
| Conread position: | 1-296 |
| Cow position: | chr11:71161671-71161969 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 122 |
| Conread position: | 1-307 |
| Cow position: | chr11:32075787-32075477 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 47 |
| Conread position: | 1-320 |
| Cow position: | chr11:59969746-59969421 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 44 |
| Conread position: | 2-212 |
| Cow position: | chr11:50040705-50040485 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 16, 42 |
| Conread position: | 2-226 |
| Cow position: | chr11:2894819-2895051 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 61, 188 |
| Conread position: | 2-236 |
| Cow position: | chr11:45821124-45820877 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 23, 44 |
| Conread position: | 2-274 |
| Cow position: | chr11:68236900-68237165 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 25, 44 |
| Conread position: | 2-291 |
| Cow position: | chr11:6419071-6419362 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 25, 46 |
| Conread position: | 2-313 |
| Cow position: | chr11:18179901-18180204 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 45 |
| Conread position: | 3-251 |
| Cow position: | chr11:36397381-36397131 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 22, 65 |
| Conread position: | 3-289 |
| Cow position: | chr11:37724155-37724442 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 25, 40 |
| Conread position: | 3-307 |
| Cow position: | chr11:72344959-72345263 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 22, 45 |
| Conread position: | 5-273 |
| Cow position: | chr11:83086711-83086442 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 84, 230 |
| Conread position: | 11-170 |
| Cow position: | chr11:14678189-14678024 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 24-223 |
| Cow position: | chr11:37328365-37328163 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 65, 24 |
| Conread position: | 24-251 |
| Cow position: | chr11:41226054-41226289 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 146 |
| Conread position: | 25-159 |
| Cow position: | chr11:35745718-35745584 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-163 |
| Cow position: | chr11:37136744-37136606 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 63, 19 |
| Conread position: | 43-264 |
| Cow position: | chr11:25355832-25356058 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 21, 148 |
| Conread position: | 50-273 |
| Cow position: | chr11:40582524-40582755 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 39, 178 |
| Conread position: | 63-275 |
| Cow position: | chr11:83266210-83266422 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 109 |
| Conread position: | 63-286 |
| Cow position: | chr11:81837773-81837551 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 140 |
| Conread position: | 63-291 |
| Cow position: | chr11:35616821-35617042 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 26, 168 |
| Conread position: | 63-296 |
| Cow position: | chr11:6887066-6887295 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 25, 185 |
| Conread position: | 63-321 |
| Cow position: | chr11:40512171-40512428 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 26, 83 |
| Conread position: | 64-190 |
| Cow position: | chr11:33189953-33190083 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 65-223 |
| Cow position: | chr11:31349085-31348928 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 11, 38 |
| Conread position: | 65-275 |
| Cow position: | chr11:85701805-85701604 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 24, 41 |
| Conread position: | 82-282 |
| Cow position: | chr11:7549350-7549543 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 31, 9 |
| Conread position: | 84-291 |
| Cow position: | chr11:5533294-5533494 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 86-307 |
| Cow position: | chr11:64038623-64038842 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 95, 79 |
| Conread position: | 86-321 |
| Cow position: | chr11:70683977-70683749 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 105, 59 |
| Conread position: | 88-307 |
| Cow position: | chr11:32500520-32500307 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 171 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 112-276 |
| Cow position: | chr11:14676345-14676172 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 138-321 |
| Cow position: | chr11:75168805-75168981 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 150-321 |
| Cow position: | chr11:72346578-72346412 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 117, 93 |
| Conread position: | 166-321 |
| Cow position: | chr11:41030316-41030464 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 170-279 |
| Cow position: | chr11:70876103-70875995 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
Show alignments to all cow chromosomes.