Cow genome map
| Conread name: | reye1618b_o19r1.y1 |
| Conread position: | 1-162 |
| Cow position: | chr13:26935196-26935030 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-169 |
| Cow position: | chr13:50813657-50813479 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1-191 |
| Cow position: | chr13:14917563-14917762 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-197 |
| Cow position: | chr13:14574336-14574541 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 1-201 |
| Cow position: | chr13:54718743-54718535 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 26, 65 |
| Conread position: | 1-223 |
| Cow position: | chr13:26005298-26005069 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 20, 204 |
| Conread position: | 1-226 |
| Cow position: | chr13:13557176-13556944 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 28, 38 |
| Conread position: | 1-233 |
| Cow position: | chr13:52852080-52852320 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 26, 224 |
| Conread position: | 1-243 |
| Cow position: | chr13:4802456-4802705 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 26, 214 |
| Conread position: | 1-243 |
| Cow position: | chr13:42101676-42101929 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1-243 |
| Cow position: | chr13:42124491-42124243 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 26, 50 |
| Conread position: | 1-247 |
| Cow position: | chr13:49454457-49454206 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 64 |
| Conread position: | 1-251 |
| Cow position: | chr13:5610619-5610361 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 1-251 |
| Cow position: | chr13:6063418-6063163 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 64, 43 |
| Conread position: | 1-272 |
| Cow position: | chr13:54409386-54409108 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 26, 44 |
| Conread position: | 1-275 |
| Cow position: | chr13:2780644-2780918 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 1-280 |
| Cow position: | chr13:722677-722943 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 24, 201 |
| Conread position: | 1-282 |
| Cow position: | chr13:17121335-17121620 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 1-282 |
| Cow position: | chr13:50117520-50117238 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 24, 40 |
| Conread position: | 1-291 |
| Cow position: | chr13:15310628-15310336 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 1-299 |
| Cow position: | chr13:54345991-54346293 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 182 |
| Conread position: | 1-305 |
| Cow position: | chr13:34189758-34190063 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 122 |
| Conread position: | 1-307 |
| Cow position: | chr13:31483334-31483020 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 1-307 |
| Cow position: | chr13:52849826-52849510 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 256 |
| Conread position: | 1-315 |
| Cow position: | chr13:13559445-13559751 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 64 |
| Conread position: | 1-315 |
| Cow position: | chr13:31488930-31488619 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 47 |
| Conread position: | 1-321 |
| Cow position: | chr13:13800246-13799931 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 26, 46 |
| Conread position: | 1-321 |
| Cow position: | chr13:14726406-14726729 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 67 |
| Conread position: | 1-321 |
| Cow position: | chr13:18860219-18860543 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 50 |
| Conread position: | 1-321 |
| Cow position: | chr13:36820496-36820171 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 2-269 |
| Cow position: | chr13:52184285-52184011 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 23, 46 |
| Conread position: | 3-197 |
| Cow position: | chr13:41691040-41690843 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 24, 41 |
| Conread position: | 3-274 |
| Cow position: | chr13:30324814-30325090 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 23, 62 |
| Conread position: | 5-299 |
| Cow position: | chr13:14863555-14863850 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 60 |
| Conread position: | 5-303 |
| Cow position: | chr13:30335437-30335739 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 23, 7 |
| Conread position: | 9-281 |
| Cow position: | chr13:17580767-17581035 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 80, 45 |
| Conread position: | 11-321 |
| Cow position: | chr13:49710911-49710602 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 19-307 |
| Cow position: | chr13:50787132-50787422 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 26 |
| Conread position: | 22-276 |
| Cow position: | chr13:43784104-43783846 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 48, 20 |
| Conread position: | 24-222 |
| Cow position: | chr13:52693357-52693558 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 65, 21 |
| Conread position: | 24-223 |
| Cow position: | chr13:52328740-52328946 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 152 |
| Conread position: | 24-275 |
| Cow position: | chr13:22108439-22108198 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 40, 21 |
| Conread position: | 25-275 |
| Cow position: | chr13:24633634-24633379 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 18, 37 |
| Conread position: | 26-251 |
| Cow position: | chr13:22109323-22109095 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 61, 22 |
| Conread position: | 26-251 |
| Cow position: | chr13:22170024-22169796 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 61, 22 |
| Conread position: | 28-279 |
| Cow position: | chr13:26324731-26324977 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 37, 15 |
| Conread position: | 42-321 |
| Cow position: | chr13:26513709-26513433 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 47, 86 |
| Conread position: | 63-275 |
| Cow position: | chr13:39936738-39936948 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 26, 48 |
| Conread position: | 63-282 |
| Cow position: | chr13:30170823-30170594 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 107 |
| Conread position: | 63-290 |
| Cow position: | chr13:31492243-31492022 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 90, 21 |
| Conread position: | 63-291 |
| Cow position: | chr13:23125130-23124907 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 23, 106 |
| Conread position: | 63-291 |
| Cow position: | chr13:27710923-27710695 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 23, 185 |
| Conread position: | 63-307 |
| Cow position: | chr13:19329260-19329019 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 24, 70 |
| Conread position: | 87-291 |
| Cow position: | chr13:20806659-20806460 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 90-307 |
| Cow position: | chr13:10111719-10111503 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 35, 110 |
| Conread position: | 101-272 |
| Cow position: | chr13:62650742-62650574 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 64 |
| Conread position: | 107-299 |
| Cow position: | chr13:55382837-55382650 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 161-281 |
| Cow position: | chr13:2188284-2188167 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 163-312 |
| Cow position: | chr13:54718363-54718218 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 80, 0 |
Show alignments to all cow chromosomes.