Cow genome map
| Conread name: | reye1618b_o19r1.y1 |
| Conread position: | 1-167 |
| Cow position: | chr21:25335350-25335520 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 26, 64 |
| Conread position: | 1-168 |
| Cow position: | chr21:37348604-37348781 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-204 |
| Cow position: | chr21:32920054-32919841 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 26, 52 |
| Conread position: | 1-218 |
| Cow position: | chr21:2832548-2832776 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 11, 48 |
| Conread position: | 1-227 |
| Cow position: | chr21:12410372-12410137 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-244 |
| Cow position: | chr21:10275840-10275586 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 195 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 26, 46 |
| Conread position: | 1-244 |
| Cow position: | chr21:35306342-35306597 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 28, 191 |
| Conread position: | 1-251 |
| Cow position: | chr21:958523-958264 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 47 |
| Conread position: | 1-251 |
| Cow position: | chr21:41535855-41536108 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 12, 48 |
| Conread position: | 1-271 |
| Cow position: | chr21:17215454-17215192 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 85, 29 |
| Conread position: | 1-273 |
| Cow position: | chr21:39145428-39145151 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 32, 187 |
| Conread position: | 1-273 |
| Cow position: | chr21:40698399-40698121 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 32, 191 |
| Conread position: | 1-274 |
| Cow position: | chr21:42074666-42074946 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 68, 225 |
| Conread position: | 1-275 |
| Cow position: | chr21:8515822-8515547 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 55, 36 |
| Conread position: | 1-291 |
| Cow position: | chr21:15015888-15016173 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 26, 152 |
| Conread position: | 1-301 |
| Cow position: | chr21:45811605-45811916 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 227 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 26, 49 |
| Conread position: | 1-306 |
| Cow position: | chr21:18540842-18540545 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 85, 37 |
| Conread position: | 1-306 |
| Cow position: | chr21:36008552-36008252 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 64 |
| Conread position: | 1-307 |
| Cow position: | chr21:48538213-48537902 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 251 |
| Conread position: | 1-321 |
| Cow position: | chr21:7075381-7075064 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 1-321 |
| Cow position: | chr21:9200024-9199696 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 58 |
| Conread position: | 1-321 |
| Cow position: | chr21:13361176-13360854 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 1-321 |
| Cow position: | chr21:18468747-18469067 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 43 |
| Conread position: | 1-321 |
| Cow position: | chr21:19572936-19572617 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 64 |
| Conread position: | 1-321 |
| Cow position: | chr21:37707926-37708249 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 2-271 |
| Cow position: | chr21:49691099-49690826 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 205 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 26, 187 |
| Conread position: | 2-273 |
| Cow position: | chr21:17205976-17205698 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 209 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 26, 184 |
| Conread position: | 2-282 |
| Cow position: | chr21:14681993-14681711 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 62 |
| Conread position: | 2-320 |
| Cow position: | chr21:6606054-6606375 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 31 |
| Conread position: | 3-168 |
| Cow position: | chr21:39255953-39256125 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 24, 45 |
| Conread position: | 3-283 |
| Cow position: | chr21:9015809-9015525 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 200 |
| Conread position: | 4-198 |
| Cow position: | chr21:41140001-41140203 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 23, 155 |
| Conread position: | 9-306 |
| Cow position: | chr21:4809520-4809824 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 39 |
| Conread position: | 17-257 |
| Cow position: | chr21:7096291-7096046 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 39, 102 |
| Conread position: | 22-282 |
| Cow position: | chr21:2681942-2681676 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 12 |
| Conread position: | 23-275 |
| Cow position: | chr21:49689023-49689273 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 66, 8 |
| Conread position: | 24-211 |
| Cow position: | chr21:22162907-22162722 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 24-307 |
| Cow position: | chr21:9013942-9013668 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 209 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 37, 176 |
| Conread position: | 26-257 |
| Cow position: | chr21:19671577-19671351 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 57, 17 |
| Conread position: | 32-227 |
| Cow position: | chr21:20785282-20785082 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 27, 153 |
| Conread position: | 48-274 |
| Cow position: | chr21:35555688-35555452 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 181 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 56-299 |
| Cow position: | chr21:8941063-8940825 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 62-291 |
| Cow position: | chr21:14685755-14685987 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 27, 132 |
| Conread position: | 63-192 |
| Cow position: | chr21:17788855-17788725 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 22, 63 |
| Conread position: | 63-291 |
| Cow position: | chr21:42863445-42863679 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 128 |
| Conread position: | 63-321 |
| Cow position: | chr21:9019376-9019119 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 184 |
| Conread position: | 74-243 |
| Cow position: | chr21:10418212-10418039 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 15, 80 |
| Conread position: | 76-226 |
| Cow position: | chr21:8610203-8610054 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 94, 8 |
| Conread position: | 78-223 |
| Cow position: | chr21:19934308-19934160 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 84-256 |
| Cow position: | chr21:39666749-39666574 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 82, 91 |
Show alignments to all cow chromosomes.