Cow genome map
| Conread name: | reye1618b_o19r1.y1 |
| Conread position: | 1-168 |
| Cow position: | chr3:4333113-4332940 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 64, 47 |
| Conread position: | 1-185 |
| Cow position: | chr3:27524211-27524402 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 63, 173 |
| Conread position: | 1-192 |
| Cow position: | chr3:32246509-32246310 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 23, 46 |
| Conread position: | 1-214 |
| Cow position: | chr3:31110291-31110512 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 181 |
| Conread position: | 1-223 |
| Cow position: | chr3:63998158-63998386 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 7, 48 |
| Conread position: | 1-225 |
| Cow position: | chr3:60787993-60788221 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 1-225 |
| Cow position: | chr3:79071122-79070890 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 28, 38 |
| Conread position: | 1-225 |
| Cow position: | chr3:81222271-81222497 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 1-238 |
| Cow position: | chr3:11952215-11951970 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 116 |
| Conread position: | 1-242 |
| Cow position: | chr3:9233408-9233167 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 43 |
| Conread position: | 1-273 |
| Cow position: | chr3:14184451-14184172 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 63, 78 |
| Conread position: | 1-274 |
| Cow position: | chr3:32578920-32578643 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 67, 28 |
| Conread position: | 1-275 |
| Cow position: | chr3:8146950-8146663 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 68, 251 |
| Conread position: | 1-275 |
| Cow position: | chr3:44090678-44090394 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 61, 236 |
| Conread position: | 1-291 |
| Cow position: | chr3:6644810-6645112 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 211 |
| Conread position: | 1-291 |
| Cow position: | chr3:45936949-45937240 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 49 |
| Conread position: | 1-292 |
| Cow position: | chr3:65534932-65535212 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 26, 46 |
| Conread position: | 1-307 |
| Cow position: | chr3:72884786-72885099 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 1-321 |
| Cow position: | chr3:14038913-14038605 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 35 |
| Conread position: | 1-321 |
| Cow position: | chr3:39403674-39403343 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 47 |
| Conread position: | 1-321 |
| Cow position: | chr3:79067196-79067519 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 47 |
| Conread position: | 2-273 |
| Cow position: | chr3:16574547-16574826 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 23, 46 |
| Conread position: | 3-251 |
| Cow position: | chr3:83458921-83459178 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 24, 134 |
| Conread position: | 5-274 |
| Cow position: | chr3:23178523-23178800 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 64, 170 |
| Conread position: | 5-275 |
| Cow position: | chr3:52608825-52608550 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 39 |
| Conread position: | 7-221 |
| Cow position: | chr3:81505536-81505755 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 20, 36 |
| Conread position: | 17-190 |
| Cow position: | chr3:75055839-75055655 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 19-213 |
| Cow position: | chr3:6769946-6769748 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 46, 24 |
| Conread position: | 22-274 |
| Cow position: | chr3:28595702-28595445 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 7, 146 |
| Conread position: | 42-223 |
| Cow position: | chr3:53211461-53211646 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 48-321 |
| Cow position: | chr3:79141972-79142249 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 15, 209 |
| Conread position: | 50-307 |
| Cow position: | chr3:78096167-78096421 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 39, 128 |
| Conread position: | 51-169 |
| Cow position: | chr3:67537635-67537515 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 35, 12 |
| Conread position: | 63-246 |
| Cow position: | chr3:53210654-53210468 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 156 |
| Conread position: | 63-291 |
| Cow position: | chr3:3709594-3709381 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 23, 86 |
| Conread position: | 63-291 |
| Cow position: | chr3:83606208-83605978 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 26, 70 |
| Conread position: | 80-307 |
| Cow position: | chr3:22812350-22812128 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 82, 104 |
| Conread position: | 84-217 |
| Cow position: | chr3:20063900-20064032 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 123, 97 |
| Conread position: | 84-232 |
| Cow position: | chr3:1902269-1902413 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 84-238 |
| Cow position: | chr3:6591624-6591777 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 90-276 |
| Cow position: | chr3:48970988-48970802 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 47, 128 |
| Conread position: | 146-281 |
| Cow position: | chr3:2308582-2308713 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 157-274 |
| Cow position: | chr3:67537305-67537188 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.