Cow genome map
| Conread name: | reye1618b_o19r1.y1 |
| Conread position: | 1-169 |
| Cow position: | chr4:28227355-28227530 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 27, 35 |
| Conread position: | 1-236 |
| Cow position: | chr4:35070474-35070228 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 1-244 |
| Cow position: | chr4:42364745-42365001 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-251 |
| Cow position: | chr4:63548863-63549122 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 1-256 |
| Cow position: | chr4:52516822-52516556 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 27, 193 |
| Conread position: | 1-274 |
| Cow position: | chr4:43563588-43563858 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 64 |
| Conread position: | 1-274 |
| Cow position: | chr4:43566700-43566973 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 64 |
| Conread position: | 1-291 |
| Cow position: | chr4:29119557-29119267 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 60, 183 |
| Conread position: | 1-301 |
| Cow position: | chr4:52336924-52336630 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 225 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 26, 65 |
| Conread position: | 1-307 |
| Cow position: | chr4:18283562-18283868 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 1-307 |
| Cow position: | chr4:29232479-29232171 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 161 |
| Conread position: | 1-321 |
| Cow position: | chr4:33002666-33002343 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 253 |
| Conread position: | 1-321 |
| Cow position: | chr4:39338104-39338425 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 17, 48 |
| Conread position: | 1-321 |
| Cow position: | chr4:57644085-57643765 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 62 |
| Conread position: | 2-224 |
| Cow position: | chr4:53651924-53651700 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 25, 62 |
| Conread position: | 2-228 |
| Cow position: | chr4:38951595-38951832 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 2-232 |
| Cow position: | chr4:16942154-16942387 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 25, 51 |
| Conread position: | 2-236 |
| Cow position: | chr4:3901867-3901629 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 51, 16 |
| Conread position: | 2-275 |
| Cow position: | chr4:59265532-59265802 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 9 |
| Conread position: | 2-281 |
| Cow position: | chr4:44425618-44425333 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 25, 46 |
| Conread position: | 2-321 |
| Cow position: | chr4:5208034-5207714 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 147 |
| Conread position: | 2-321 |
| Cow position: | chr4:25188989-25188671 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 25, 63 |
| Conread position: | 3-193 |
| Cow position: | chr4:565066-565266 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 22, 45 |
| Conread position: | 3-299 |
| Cow position: | chr4:49743060-49742770 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 227 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 18, 43 |
| Conread position: | 5-224 |
| Cow position: | chr4:54355687-54355912 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 19, 44 |
| Conread position: | 11-155 |
| Cow position: | chr4:32803776-32803627 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 53, 45 |
| Conread position: | 12-275 |
| Cow position: | chr4:40249553-40249823 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 53, 33 |
| Conread position: | 14-193 |
| Cow position: | chr4:55648001-55648178 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 67, 31 |
| Conread position: | 23-221 |
| Cow position: | chr4:60833350-60833141 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 66, 170 |
| Conread position: | 24-233 |
| Cow position: | chr4:18797535-18797749 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 24-275 |
| Cow position: | chr4:45383131-45382881 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 45, 18 |
| Conread position: | 26-198 |
| Cow position: | chr4:54377529-54377704 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 42-283 |
| Cow position: | chr4:19839824-19839583 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 44, 19 |
| Conread position: | 49-291 |
| Cow position: | chr4:58789967-58789722 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 37, 55 |
| Conread position: | 63-230 |
| Cow position: | chr4:63905109-63905281 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 24, 89 |
| Conread position: | 63-237 |
| Cow position: | chr4:39337303-39337122 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 63-274 |
| Cow position: | chr4:23681169-23681383 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 24, 120 |
| Conread position: | 63-275 |
| Cow position: | chr4:45224443-45224657 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 24, 105 |
| Conread position: | 84-223 |
| Cow position: | chr4:4020787-4020924 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 84-274 |
| Cow position: | chr4:44754275-44754085 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 114, 70 |
| Conread position: | 114-321 |
| Cow position: | chr4:58029067-58029264 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 173, 132 |
Show alignments to all cow chromosomes.