Cow genome map
| Conread name: | reye1618b_o19r1.y1 |
| Conread position: | 1-138 |
| Cow position: | chr5:64185391-64185251 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 19, 47 |
| Conread position: | 1-168 |
| Cow position: | chr5:60041635-60041811 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 1-193 |
| Cow position: | chr5:63252251-63252456 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 19, 50 |
| Conread position: | 1-196 |
| Cow position: | chr5:59331962-59331767 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 1-214 |
| Cow position: | chr5:3396553-3396775 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 61, 24 |
| Conread position: | 1-226 |
| Cow position: | chr5:63793636-63793862 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 36, 44 |
| Conread position: | 1-251 |
| Cow position: | chr5:9520334-9520584 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 23, 90 |
| Conread position: | 1-269 |
| Cow position: | chr5:59859803-59859531 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 10, 48 |
| Conread position: | 1-271 |
| Cow position: | chr5:8132882-8132618 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 19, 47 |
| Conread position: | 1-273 |
| Cow position: | chr5:25444751-25445030 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 224 |
| Conread position: | 1-273 |
| Cow position: | chr5:53582596-53582885 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 20, 58 |
| Conread position: | 1-275 |
| Cow position: | chr5:47460083-47459808 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 1-275 |
| Cow position: | chr5:49610062-49609786 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 23, 47 |
| Conread position: | 1-291 |
| Cow position: | chr5:26464728-26465020 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 26, 45 |
| Conread position: | 1-291 |
| Cow position: | chr5:59117974-59117683 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 24, 36 |
| Conread position: | 1-296 |
| Cow position: | chr5:39338737-39338438 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 191 |
| Conread position: | 1-321 |
| Cow position: | chr5:34025023-34024700 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 1-321 |
| Cow position: | chr5:40388494-40388815 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 244 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 26, 40 |
| Conread position: | 1-321 |
| Cow position: | chr5:44697022-44697343 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 46 |
| Conread position: | 1-321 |
| Cow position: | chr5:45710307-45709977 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 25, 64 |
| Conread position: | 1-321 |
| Cow position: | chr5:47767783-47768106 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 35 |
| Conread position: | 1-321 |
| Cow position: | chr5:47837957-47838282 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 257 |
| Conread position: | 2-291 |
| Cow position: | chr5:39323465-39323172 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 221 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 26, 156 |
| Conread position: | 4-307 |
| Cow position: | chr5:31249471-31249170 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 59, 40 |
| Conread position: | 6-291 |
| Cow position: | chr5:25479384-25479092 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 15, 42 |
| Conread position: | 12-214 |
| Cow position: | chr5:45196598-45196391 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 15, 35 |
| Conread position: | 18-241 |
| Cow position: | chr5:18391724-18391497 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 46, 93 |
| Conread position: | 24-226 |
| Cow position: | chr5:56269587-56269379 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 39, 20 |
| Conread position: | 24-233 |
| Cow position: | chr5:43087197-43087410 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 32, 159 |
| Conread position: | 24-251 |
| Cow position: | chr5:60922219-60922453 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 41, 154 |
| Conread position: | 25-286 |
| Cow position: | chr5:41330519-41330779 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 42-169 |
| Cow position: | chr5:47367186-47367057 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 19 |
| Conread position: | 48-271 |
| Cow position: | chr5:17391631-17391859 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 15, 98 |
| Conread position: | 48-296 |
| Cow position: | chr5:59053394-59053648 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 195 |
| Conread position: | 56-279 |
| Cow position: | chr5:57628828-57628604 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 192 |
| Conread position: | 63-221 |
| Cow position: | chr5:2489500-2489663 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 23, 91 |
| Conread position: | 63-251 |
| Cow position: | chr5:9328755-9328938 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 23, 37 |
| Conread position: | 63-275 |
| Cow position: | chr5:20848252-20848040 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 25, 168 |
| Conread position: | 63-280 |
| Cow position: | chr5:73566883-73567101 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 26, 83 |
| Conread position: | 63-321 |
| Cow position: | chr5:59044960-59045218 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 175 |
| Conread position: | 64-291 |
| Cow position: | chr5:64190724-64190951 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 65-273 |
| Cow position: | chr5:39324552-39324335 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 84-232 |
| Cow position: | chr5:9887264-9887411 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 84-307 |
| Cow position: | chr5:33922793-33922573 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 93-321 |
| Cow position: | chr5:59100866-59101090 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 192, 141 |
Show alignments to all cow chromosomes.