Cow genome map

Conread name: reye1619b_p3r1.y1

Conread position: 1-155
Cow position: chr13:60424041-60423878 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 52, 17

Conread position: 1-185
Cow position: chr13:20540965-20541169 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 160
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 23, 0

Conread position: 1-194
Cow position: chr13:33524665-33524869 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 155
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 19, 0

Conread position: 1-197
Cow position: chr13:50193104-50193317 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 159
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 19, 192

Conread position: 1-200
Cow position: chr13:47575383-47575163 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 172
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 24, 134

Conread position: 1-213
Cow position: chr13:16253225-16253455 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 179
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 24, 0

Conread position: 1-242
Cow position: chr13:34764549-34764798 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 185
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 93, 144

Conread position: 1-243
Cow position: chr13:42217391-42217653 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 204
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 24, 210

Conread position: 1-247
Cow position: chr13:60468717-60468448 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 201
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 24, 0

Conread position: 1-278
Cow position: chr13:42090402-42090695 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 239

Conread position: 1-279
Cow position: chr13:34030895-34030608 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 219
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 20, 52

Conread position: 1-279
Cow position: chr13:60699298-60699578 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 198
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 24, 160

Conread position: 1-280
Cow position: chr13:48358919-48358630 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 226
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 24, 56

Conread position: 1-281
Cow position: chr13:679042-678737 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 228
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 24, 0

Conread position: 1-281
Cow position: chr13:2387514-2387820 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 220
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 24, 0

Conread position: 1-281
Cow position: chr13:6358415-6358110 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 228
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 24, 0

Conread position: 1-281
Cow position: chr13:17309754-17309456 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 225
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 19, 136

Conread position: 1-281
Cow position: chr13:28860455-28860151 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 226
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 24, 0

Conread position: 1-282
Cow position: chr13:15449862-15450133 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 221
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 24, 77

Conread position: 1-282
Cow position: chr13:26845541-26845273 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 223
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 78, 40

Conread position: 1-283
Cow position: chr13:60648514-60648818 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 24, 0

Conread position: 1-284
Cow position: chr13:5500708-5501015 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 231
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 24, 73

Conread position: 1-284
Cow position: chr13:5624698-5625002 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 196

Conread position: 1-284
Cow position: chr13:6666848-6667147 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 216
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 19, 77

Conread position: 1-284
Cow position: chr13:11797416-11797734 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 240
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 24, 0

Conread position: 1-284
Cow position: chr13:14401817-14402112 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 151

Conread position: 1-284
Cow position: chr13:32984053-32984358 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 1-284
Cow position: chr13:34908751-34909038 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 65

Conread position: 1-284
Cow position: chr13:43590610-43590315 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 50

Conread position: 1-285
Cow position: chr13:30239619-30239301 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 1-286
Cow position: chr13:8796523-8796816 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 204
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 20, 265

Conread position: 1-289
Cow position: chr13:50110744-50110432 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 262

Conread position: 1-295
Cow position: chr13:11793793-11794082 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 224
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 24, 77

Conread position: 1-303
Cow position: chr13:13326218-13325896 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 304

Conread position: 1-303
Cow position: chr13:21838916-21839226 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 236
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 52, 25

Conread position: 1-303
Cow position: chr13:31732603-31732922 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 237
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 25, 68

Conread position: 1-313
Cow position: chr13:49974957-49974622 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 247
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 24, 307

Conread position: 2-164
Cow position: chr13:43981797-43981963 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 23, 59

Conread position: 2-286
Cow position: chr13:25692963-25692661 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 129

Conread position: 4-254
Cow position: chr13:3482535-3482797 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 189
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 39, 47

Conread position: 4-276
Cow position: chr13:34938726-34938439 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 257

Conread position: 4-279
Cow position: chr13:21697552-21697242 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 228
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 21, 0

Conread position: 7-194
Cow position: chr13:34324293-34324496 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 162
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 44, 192

Conread position: 7-282
Cow position: chr13:3653028-3653332 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 222
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 18, 0

Conread position: 7-284
Cow position: chr13:4485077-4484774 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 227
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 18, 0

Conread position: 7-284
Cow position: chr13:4942670-4942368 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 7-284
Cow position: chr13:9046039-9045751 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 47

Conread position: 7-284
Cow position: chr13:15543825-15543526 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 124

Conread position: 7-284
Cow position: chr13:23001727-23002023 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 7-284
Cow position: chr13:31611026-31611325 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 184

Conread position: 7-284
Cow position: chr13:31729607-31729910 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 226
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 18, 0

Conread position: 7-284
Cow position: chr13:32923851-32924139 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 213
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 18, 48

Conread position: 7-284
Cow position: chr13:34041049-34041353 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 7-284
Cow position: chr13:35758566-35758267 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 21

Conread position: 7-294
Cow position: chr13:31508192-31507892 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 193

Conread position: 7-302
Cow position: chr13:33335030-33335329 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 199
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 48

Conread position: 8-284
Cow position: chr13:34343190-34342890 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 225
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 17, 0

Conread position: 9-289
Cow position: chr13:15923096-15923402 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 19-270
Cow position: chr13:22184082-22184331 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 181
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 75, 36

Conread position: 20-284
Cow position: chr13:13901136-13900853 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 208
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 47, 266

Conread position: 22-284
Cow position: chr13:15519268-15519536 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 209
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 72, 24

Conread position: 24-284
Cow position: chr13:30654121-30654412 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 26-276
Cow position: chr13:44652584-44652816 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 181
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 83, 19

Conread position: 27-254
Cow position: chr13:30011559-30011796 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 55, 31

Conread position: 31-294
Cow position: chr13:28669980-28670238 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 193
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 60, 23

Conread position: 37-284
Cow position: chr13:32546644-32546375 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 202
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 16, 0

Conread position: 46-278
Cow position: chr13:57024925-57024684 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 177
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 55, 18

Conread position: 53-278
Cow position: chr13:17998793-17998548 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 187
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 41, 0

Conread position: 65-284
Cow position: chr13:47228775-47229015 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 182
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 39, 0

Conread position: 122-295
Cow position: chr13:43981956-43982127 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 25, 8

Show alignments to all cow chromosomes.