Cow genome map

Conread name: reye1619b_p3r1.y1

Conread position: 1-106
Cow position: chr16:16240467-16240575 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 92
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 1-128
Cow position: chr16:49233661-49233796 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 1-193
Cow position: chr16:1861057-1860848 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 173
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 24, 0

Conread position: 1-194
Cow position: chr16:37480033-37480243 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 163
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 24, 0

Conread position: 1-220
Cow position: chr16:5871709-5871479 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 182
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 22, 159

Conread position: 1-224
Cow position: chr16:2726391-2726632 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 183
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 20, 132

Conread position: 1-224
Cow position: chr16:18678173-18677932 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 174
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 25, 47

Conread position: 1-247
Cow position: chr16:10967279-10967519 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 191
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 93, 46

Conread position: 1-254
Cow position: chr16:2237944-2238210 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 18, 30

Conread position: 1-254
Cow position: chr16:5527563-5527834 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 193
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 24, 247

Conread position: 1-254
Cow position: chr16:16229139-16228872 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 1-275
Cow position: chr16:51403053-51403365 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 231
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 21, 0

Conread position: 1-279
Cow position: chr16:10564956-10565256 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 205
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 22, 131

Conread position: 1-279
Cow position: chr16:19080792-19080489 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 229
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 24, 0

Conread position: 1-279
Cow position: chr16:27594329-27594030 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 269

Conread position: 1-281
Cow position: chr16:3088382-3088684 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 1-281
Cow position: chr16:16519948-16520242 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 67

Conread position: 1-284
Cow position: chr16:33350-33046 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 224
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 25, 0

Conread position: 1-284
Cow position: chr16:3330754-3330456 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 52

Conread position: 1-284
Cow position: chr16:5890822-5890515 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 68

Conread position: 1-284
Cow position: chr16:10374774-10375081 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 1-284
Cow position: chr16:19149778-19150065 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 54

Conread position: 1-284
Cow position: chr16:25086434-25086135 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 28

Conread position: 1-284
Cow position: chr16:49255411-49255711 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 68

Conread position: 1-285
Cow position: chr16:25001468-25001776 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 1-292
Cow position: chr16:9931555-9931251 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 212

Conread position: 1-295
Cow position: chr16:25258625-25258334 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 83

Conread position: 1-299
Cow position: chr16:28196419-28196742 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 237
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 24, 0

Conread position: 1-314
Cow position: chr16:5662661-5662325 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 307

Conread position: 2-260
Cow position: chr16:32937343-32937068 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 251

Conread position: 2-263
Cow position: chr16:34531119-34530852 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 206

Conread position: 2-279
Cow position: chr16:27823427-27823702 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 189
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 18, 72

Conread position: 2-279
Cow position: chr16:55049084-55049349 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 201
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 65, 27

Conread position: 2-284
Cow position: chr16:16898274-16897975 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 43

Conread position: 3-280
Cow position: chr16:18497497-18497779 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 207

Conread position: 4-282
Cow position: chr16:17056154-17056449 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 210
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 21, 186

Conread position: 4-284
Cow position: chr16:16270316-16270616 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 191

Conread position: 6-278
Cow position: chr16:19778832-19779128 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 223
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 19, 0

Conread position: 7-223
Cow position: chr16:2410113-2410352 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 178
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 7-229
Cow position: chr16:25342787-25342550 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 182
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 18, 125

Conread position: 7-252
Cow position: chr16:7465133-7464869 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 199
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 18, 244

Conread position: 7-252
Cow position: chr16:12537132-12537393 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 202
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 14, 216

Conread position: 7-284
Cow position: chr16:838134-837835 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 7-284
Cow position: chr16:2482319-2482621 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 7-284
Cow position: chr16:4478151-4478452 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 218
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 17, 0

Conread position: 7-284
Cow position: chr16:5485542-5485249 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 7-284
Cow position: chr16:7675637-7675940 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 224
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 18, 48

Conread position: 7-284
Cow position: chr16:10439074-10438770 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 18, 0

Conread position: 7-284
Cow position: chr16:15568073-15567774 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 224
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 14, 240

Conread position: 7-284
Cow position: chr16:23251608-23251919 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 234
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 18, 0

Conread position: 7-284
Cow position: chr16:23535085-23535372 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 45

Conread position: 7-284
Cow position: chr16:23984116-23983814 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 224
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 18, 251

Conread position: 7-284
Cow position: chr16:25456665-25456960 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 7-284
Cow position: chr16:26664568-26664270 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 223
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 13, 28

Conread position: 7-284
Cow position: chr16:27732566-27732861 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 214

Conread position: 7-284
Cow position: chr16:28470254-28470556 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 7-284
Cow position: chr16:29047838-29047540 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 223
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 19, 38

Conread position: 7-284
Cow position: chr16:31591103-31591398 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 48

Conread position: 7-284
Cow position: chr16:40295345-40295656 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 232
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 18, 74

Conread position: 7-284
Cow position: chr16:43896446-43896756 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 226
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 18, 0

Conread position: 7-294
Cow position: chr16:8815289-8815594 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 63

Conread position: 7-294
Cow position: chr16:15185895-15185582 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 7-294
Cow position: chr16:25442445-25442137 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 296

Conread position: 7-295
Cow position: chr16:41165854-41166137 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 227
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 18, 128

Conread position: 9-284
Cow position: chr16:1566640-1566937 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 9-284
Cow position: chr16:14665000-14665291 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 60

Conread position: 9-284
Cow position: chr16:40557131-40557429 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 226
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 12, 140

Conread position: 9-295
Cow position: chr16:406223-406531 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 295

Conread position: 10-294
Cow position: chr16:15477657-15477353 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 222
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 11, 240

Conread position: 13-211
Cow position: chr16:28158361-28158154 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 25, 52

Conread position: 13-265
Cow position: chr16:41685445-41685708 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 202
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 81, 38

Conread position: 13-280
Cow position: chr16:23671509-23671219 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 31

Conread position: 13-281
Cow position: chr16:37455203-37455480 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 29

Conread position: 13-295
Cow position: chr16:52590871-52591164 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 205
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 33, 15

Conread position: 19-282
Cow position: chr16:1432990-1432711 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 206
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 34, 191

Conread position: 19-282
Cow position: chr16:54324534-54324815 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 212
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 34, 0

Conread position: 19-284
Cow position: chr16:51084958-51084670 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 221
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 34, 183

Conread position: 20-281
Cow position: chr16:49221104-49221362 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 98

Conread position: 22-242
Cow position: chr16:1959817-1960048 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 180
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 31, 0

Conread position: 24-279
Cow position: chr16:25189441-25189171 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 209
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 31, 111

Conread position: 24-285
Cow position: chr16:37481634-37481902 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 185
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 70, 29

Conread position: 25-267
Cow position: chr16:38024119-38023858 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 183
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 12, 5

Conread position: 25-270
Cow position: chr16:10568438-10568194 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 66, 29

Conread position: 26-276
Cow position: chr16:3828495-3828747 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 178
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 24, 39

Conread position: 28-284
Cow position: chr16:26105256-26105542 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 210
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 25, 230

Conread position: 30-279
Cow position: chr16:27714033-27714288 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 197
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 24, 149

Conread position: 36-286
Cow position: chr16:26978909-26978645 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 208
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 18, 157

Conread position: 46-285
Cow position: chr16:36087649-36087901 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 85, 66

Conread position: 53-279
Cow position: chr16:11284361-11284115 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 183
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 41, 0

Conread position: 54-269
Cow position: chr16:25933463-25933232 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 40, 0

Conread position: 56-279
Cow position: chr16:21186381-21186138 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 179
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 38, 0

Conread position: 59-303
Cow position: chr16:28169586-28169852 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 194
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 46, 246

Conread position: 64-285
Cow position: chr16:23809073-23808845 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 168

Conread position: 86-299
Cow position: chr16:3918797-3918568 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 11, 0

Conread position: 93-272
Cow position: chr16:39366187-39366378 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 7, 135

Conread position: 108-284
Cow position: chr16:49233929-49234114 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 147
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 43, 0

Conread position: 133-294
Cow position: chr16:56916389-56916561 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 24, 166

Conread position: 135-323
Cow position: chr16:29034722-29034515 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 68, 0

Conread position: 149-284
Cow position: chr16:42735741-42735874 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 113
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 72, 62

Conread position: 156-269
Cow position: chr16:20331449-20331330 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 47, 0

Show alignments to all cow chromosomes.