Cow genome map
| Conread name: | reye1619b_p3r1.y1 |
| Conread position: | 1-164 |
| Cow position: | chr21:997165-997328 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 93, 40 |
| Conread position: | 1-167 |
| Cow position: | chr21:6414342-6414524 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-218 |
| Cow position: | chr21:34655510-34655287 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 8 |
| Conread position: | 1-234 |
| Cow position: | chr21:38802119-38801864 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-266 |
| Cow position: | chr21:13298275-13297999 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 227 |
| Conread position: | 1-270 |
| Cow position: | chr21:6626211-6625925 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-270 |
| Cow position: | chr21:31639595-31639320 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 27, 129 |
| Conread position: | 1-271 |
| Cow position: | chr21:468582-468299 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 22, 143 |
| Conread position: | 1-278 |
| Cow position: | chr21:12054335-12054635 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 24, 191 |
| Conread position: | 1-279 |
| Cow position: | chr21:1286533-1286825 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 60 |
| Conread position: | 1-279 |
| Cow position: | chr21:34822528-34822831 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-279 |
| Cow position: | chr21:47942631-47942328 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-280 |
| Cow position: | chr21:26849343-26849638 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 78, 49 |
| Conread position: | 1-281 |
| Cow position: | chr21:4565143-4564853 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 54, 22 |
| Conread position: | 1-281 |
| Cow position: | chr21:23804445-23804731 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 24, 127 |
| Conread position: | 1-282 |
| Cow position: | chr21:47647013-47646707 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 230 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 24, 66 |
| Conread position: | 1-284 |
| Cow position: | chr21:2712593-2712312 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 28 |
| Conread position: | 1-284 |
| Cow position: | chr21:5012028-5012330 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-284 |
| Cow position: | chr21:26635475-26635780 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 223 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-284 |
| Cow position: | chr21:31514634-31514940 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-284 |
| Cow position: | chr21:35145429-35145135 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 55 |
| Conread position: | 1-285 |
| Cow position: | chr21:4588323-4588602 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 52, 126 |
| Conread position: | 1-285 |
| Cow position: | chr21:25783539-25783226 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-294 |
| Cow position: | chr21:45783152-45782851 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 144 |
| Conread position: | 1-295 |
| Cow position: | chr21:30721-30439 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 132 |
| Conread position: | 1-295 |
| Cow position: | chr21:361342-361041 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 230 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 52, 25 |
| Conread position: | 1-303 |
| Cow position: | chr21:2417891-2417573 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 65 |
| Conread position: | 1-303 |
| Cow position: | chr21:2512532-2512206 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 305 |
| Conread position: | 1-303 |
| Cow position: | chr21:19612442-19612116 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 240 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 24, 250 |
| Conread position: | 1-316 |
| Cow position: | chr21:42915047-42914711 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 305 |
| Conread position: | 1-318 |
| Cow position: | chr21:20742956-20743270 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 1-320 |
| Cow position: | chr21:28614010-28613661 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 338 |
| Conread position: | 2-237 |
| Cow position: | chr21:2539398-2539655 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 2-284 |
| Cow position: | chr21:11507295-11506988 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 2-284 |
| Cow position: | chr21:33253864-33253558 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 230 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 22, 185 |
| Conread position: | 4-193 |
| Cow position: | chr21:24085123-24085322 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 179 |
| Conread position: | 4-254 |
| Cow position: | chr21:45785775-45786023 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 21, 52 |
| Conread position: | 4-284 |
| Cow position: | chr21:39426751-39426437 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 6-224 |
| Cow position: | chr21:31250685-31250454 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 186 |
| Conread position: | 7-205 |
| Cow position: | chr21:30563346-30563136 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 14, 49 |
| Conread position: | 7-242 |
| Cow position: | chr21:26836866-26836606 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 7-247 |
| Cow position: | chr21:2880149-2880405 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 49 |
| Conread position: | 7-282 |
| Cow position: | chr21:27285136-27284846 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 225 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 18, 48 |
| Conread position: | 7-284 |
| Cow position: | chr21:147598-147302 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 7-284 |
| Cow position: | chr21:3780450-3780146 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 228 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 7-284 |
| Cow position: | chr21:10568375-10568079 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 21 |
| Conread position: | 7-284 |
| Cow position: | chr21:40269996-40270297 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 227 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 14, 265 |
| Conread position: | 7-295 |
| Cow position: | chr21:5018816-5018508 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 264 |
| Conread position: | 8-284 |
| Cow position: | chr21:30597795-30598104 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 9-284 |
| Cow position: | chr21:27069290-27069588 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 220 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 11, 47 |
| Conread position: | 9-284 |
| Cow position: | chr21:37372909-37372614 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 17, 142 |
| Conread position: | 9-294 |
| Cow position: | chr21:10851751-10851453 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 16, 65 |
| Conread position: | 14-276 |
| Cow position: | chr21:4185584-4185304 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 19-216 |
| Cow position: | chr21:28257087-28256892 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 19-254 |
| Cow position: | chr21:38023785-38023550 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 34, 108 |
| Conread position: | 19-269 |
| Cow position: | chr21:5839525-5839787 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 33, 232 |
| Conread position: | 20-262 |
| Cow position: | chr21:21942920-21943181 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 6, 156 |
| Conread position: | 20-284 |
| Cow position: | chr21:28736829-28736551 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 31, 251 |
| Conread position: | 22-254 |
| Cow position: | chr21:29003879-29004121 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 24-262 |
| Cow position: | chr21:27567397-27567158 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 40 |
| Conread position: | 30-271 |
| Cow position: | chr21:29257440-29257688 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 62, 90 |
| Conread position: | 55-270 |
| Cow position: | chr21:22751807-22752018 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 78-262 |
| Cow position: | chr21:2673372-2673566 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 95-278 |
| Cow position: | chr21:27035819-27036017 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 100-279 |
| Cow position: | chr21:40682871-40683064 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 102-279 |
| Cow position: | chr21:7064074-7063883 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
Show alignments to all cow chromosomes.