Cow genome map

Conread name: reye1619b_p3r1.y1

Conread position: 1-164
Cow position: chr22:11807230-11807407 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 140
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 24, 0

Conread position: 1-164
Cow position: chr22:40370981-40370813 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 135
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 52, 39

Conread position: 1-171
Cow position: chr22:44366596-44366781 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 1-231
Cow position: chr22:44458458-44458214 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 188
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 19, 0

Conread position: 1-232
Cow position: chr22:8664471-8664698 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 155, 19

Conread position: 1-239
Cow position: chr22:29011765-29012010 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 163

Conread position: 1-252
Cow position: chr22:30129091-30128831 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 235

Conread position: 1-252
Cow position: chr22:30146740-30146480 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 235

Conread position: 1-255
Cow position: chr22:1268242-1268517 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 211
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 24, 15

Conread position: 1-271
Cow position: chr22:11033599-11033331 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 24

Conread position: 1-276
Cow position: chr22:45582418-45582129 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 213
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 89, 27

Conread position: 1-278
Cow position: chr22:317016-316728 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 209
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 22, 143

Conread position: 1-278
Cow position: chr22:46580207-46580508 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 223
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 24, 0

Conread position: 1-279
Cow position: chr22:3276846-3277149 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 1-279
Cow position: chr22:15352383-15352089 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 161

Conread position: 1-279
Cow position: chr22:23800708-23800994 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 151

Conread position: 1-279
Cow position: chr22:35670155-35670455 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 220
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 24, 184

Conread position: 1-281
Cow position: chr22:6022163-6021873 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 88

Conread position: 1-281
Cow position: chr22:11803541-11803845 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 231
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 24, 46

Conread position: 1-284
Cow position: chr22:1281223-1281514 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 205

Conread position: 1-284
Cow position: chr22:6501634-6501931 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 24

Conread position: 1-284
Cow position: chr22:16202424-16202116 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 1-284
Cow position: chr22:21034879-21035184 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 1-284
Cow position: chr22:21194987-21195286 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 1-284
Cow position: chr22:35905876-35906185 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 1-284
Cow position: chr22:36185263-36184965 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 215
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 24, 53

Conread position: 1-284
Cow position: chr22:37268678-37268371 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 228
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 24, 191

Conread position: 1-285
Cow position: chr22:325674-325984 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 233
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 24, 306

Conread position: 1-285
Cow position: chr22:1880315-1880008 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 225
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 24, 0

Conread position: 1-285
Cow position: chr22:44492566-44492257 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 231
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 24, 0

Conread position: 1-287
Cow position: chr22:3305090-3305395 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 66

Conread position: 1-288
Cow position: chr22:44606182-44606478 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 215
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 103, 15

Conread position: 1-290
Cow position: chr22:46614814-46614503 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 305

Conread position: 1-291
Cow position: chr22:21590933-21590620 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 200
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 24, 68

Conread position: 1-294
Cow position: chr22:44367971-44368275 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 234
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 24, 259

Conread position: 1-295
Cow position: chr22:33352174-33351876 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 250

Conread position: 1-303
Cow position: chr22:538620-538292 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 236
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 24, 70

Conread position: 1-303
Cow position: chr22:695123-694810 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 10

Conread position: 1-303
Cow position: chr22:10908325-10908650 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 307

Conread position: 1-303
Cow position: chr22:24952068-24951743 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 307

Conread position: 1-303
Cow position: chr22:27308267-27308588 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 300

Conread position: 1-311
Cow position: chr22:18028801-18028466 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 309

Conread position: 1-314
Cow position: chr22:30677203-30677510 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 232
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 25, 111

Conread position: 2-202
Cow position: chr22:44478252-44478054 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 159
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 24, 69

Conread position: 3-283
Cow position: chr22:12730187-12730481 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 200

Conread position: 4-213
Cow position: chr22:13766869-13766650 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 168
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 19, 53

Conread position: 4-284
Cow position: chr22:46585061-46585360 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 215
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 57, 38

Conread position: 4-299
Cow position: chr22:20239329-20239651 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 236
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 21, 0

Conread position: 7-247
Cow position: chr22:296951-296698 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 194
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 18, 130

Conread position: 7-284
Cow position: chr22:521888-522190 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 223
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 18, 0

Conread position: 7-284
Cow position: chr22:559204-559502 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 49

Conread position: 7-284
Cow position: chr22:1519525-1519814 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 224
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 18, 47

Conread position: 7-284
Cow position: chr22:3803685-3803388 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 181

Conread position: 7-284
Cow position: chr22:6333214-6332915 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 47

Conread position: 7-284
Cow position: chr22:17326953-17327251 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 7-284
Cow position: chr22:31333544-31333842 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 62

Conread position: 7-284
Cow position: chr22:34169840-34169544 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 49

Conread position: 7-284
Cow position: chr22:36860043-36860334 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 151

Conread position: 7-284
Cow position: chr22:37292173-37292470 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 49

Conread position: 7-284
Cow position: chr22:39468013-39468315 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 49

Conread position: 7-284
Cow position: chr22:44397934-44397638 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 224
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 17, 183

Conread position: 7-284
Cow position: chr22:44935467-44935175 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 219
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 18, 49

Conread position: 7-294
Cow position: chr22:42992680-42992372 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 259

Conread position: 7-295
Cow position: chr22:19142181-19142496 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 234
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 18, 306

Conread position: 9-311
Cow position: chr22:8120585-8120900 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 149

Conread position: 13-279
Cow position: chr22:19243891-19243611 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 200
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 10, 38

Conread position: 13-280
Cow position: chr22:8736849-8737133 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 220
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 43, 10

Conread position: 14-263
Cow position: chr22:44518142-44518398 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 189
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 39, 127

Conread position: 14-284
Cow position: chr22:44348367-44348650 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 204
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 39, 265

Conread position: 14-290
Cow position: chr22:2394504-2394789 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 197
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 125, 14

Conread position: 19-275
Cow position: chr22:13774012-13773738 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 211

Conread position: 19-281
Cow position: chr22:7304165-7304447 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 215
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 34, 65

Conread position: 19-284
Cow position: chr22:18814875-18815160 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 19-295
Cow position: chr22:15852912-15852615 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 227
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 47

Conread position: 22-270
Cow position: chr22:4066060-4066313 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 179
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 54

Conread position: 28-236
Cow position: chr22:37134553-37134336 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 30, 189

Conread position: 30-228
Cow position: chr22:37141633-37141426 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 28, 52

Conread position: 33-284
Cow position: chr22:38550862-38550596 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 205
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 21, 154

Conread position: 37-279
Cow position: chr22:19537025-19536761 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 195
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 18, 0

Conread position: 46-274
Cow position: chr22:45510080-45510318 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 166
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 7, 215

Conread position: 52-284
Cow position: chr22:34600788-34600552 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 181
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 24, 12

Conread position: 67-271
Cow position: chr22:40379149-40378945 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 34, 93

Conread position: 95-284
Cow position: chr22:6601837-6602028 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 151
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 6, 33

Conread position: 144-295
Cow position: chr22:40370789-40370642 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 112, 13

Conread position: 149-284
Cow position: chr22:1323551-1323412 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 116
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 56, 8

Show alignments to all cow chromosomes.