Cow genome map
| Conread name: | reye1619b_p3r1.y1 |
| Conread position: | 1-185 |
| Cow position: | chr24:12149698-12149892 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 73 |
| Conread position: | 1-189 |
| Cow position: | chr24:14755595-14755391 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-233 |
| Cow position: | chr24:6023491-6023743 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 24, 189 |
| Conread position: | 1-247 |
| Cow position: | chr24:310464-310196 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 202 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-252 |
| Cow position: | chr24:12127514-12127788 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 20, 44 |
| Conread position: | 1-263 |
| Cow position: | chr24:35840489-35840754 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 54 |
| Conread position: | 1-275 |
| Cow position: | chr24:13179423-13179720 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 219 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-278 |
| Cow position: | chr24:13044031-13044346 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-278 |
| Cow position: | chr24:44019105-44018803 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-279 |
| Cow position: | chr24:7063139-7062836 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-279 |
| Cow position: | chr24:9187145-9187448 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-279 |
| Cow position: | chr24:12699227-12699523 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 225 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 24, 270 |
| Conread position: | 1-279 |
| Cow position: | chr24:23504263-23504568 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 228 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-281 |
| Cow position: | chr24:6353734-6353435 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 25, 272 |
| Conread position: | 1-283 |
| Cow position: | chr24:12238882-12238582 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 22, 206 |
| Conread position: | 1-284 |
| Cow position: | chr24:6142666-6142373 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 221 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 24, 137 |
| Conread position: | 1-284 |
| Cow position: | chr24:6337979-6337678 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 73 |
| Conread position: | 1-284 |
| Cow position: | chr24:19835003-19834686 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 236 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-284 |
| Cow position: | chr24:25437875-25437584 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 1-284 |
| Cow position: | chr24:33934984-33934678 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 223 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-303 |
| Cow position: | chr24:5991629-5991953 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 239 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 24, 303 |
| Conread position: | 1-303 |
| Cow position: | chr24:11151640-11151965 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 240 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 24, 307 |
| Conread position: | 1-309 |
| Cow position: | chr24:13233855-13233524 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 307 |
| Conread position: | 1-311 |
| Cow position: | chr24:17322288-17321978 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 24, 68 |
| Conread position: | 1-313 |
| Cow position: | chr24:6436080-6435745 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 310 |
| Conread position: | 1-317 |
| Cow position: | chr24:12204747-12205076 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 69 |
| Conread position: | 2-284 |
| Cow position: | chr24:14277633-14277930 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 92, 39 |
| Conread position: | 2-295 |
| Cow position: | chr24:19703090-19702778 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 229 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 23, 302 |
| Conread position: | 3-194 |
| Cow position: | chr24:16083186-16083393 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 3-279 |
| Cow position: | chr24:17300326-17300607 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 22, 150 |
| Conread position: | 3-303 |
| Cow position: | chr24:13189767-13189459 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 236 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 22, 53 |
| Conread position: | 6-282 |
| Cow position: | chr24:9090460-9090760 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 19, 203 |
| Conread position: | 7-189 |
| Cow position: | chr24:22972655-22972460 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 7-209 |
| Cow position: | chr24:40468638-40468425 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 18, 49 |
| Conread position: | 7-221 |
| Cow position: | chr24:12334140-12334371 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 13, 175 |
| Conread position: | 7-241 |
| Cow position: | chr24:8606407-8606153 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 7-284 |
| Cow position: | chr24:147021-147320 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 7-284 |
| Cow position: | chr24:4413956-4414244 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 18, 49 |
| Conread position: | 7-284 |
| Cow position: | chr24:6130400-6130116 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 132 |
| Conread position: | 7-284 |
| Cow position: | chr24:6407623-6407324 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 46 |
| Conread position: | 7-284 |
| Cow position: | chr24:9545645-9545344 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 225 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 18, 244 |
| Conread position: | 7-284 |
| Cow position: | chr24:12087790-12087498 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 147 |
| Conread position: | 7-284 |
| Cow position: | chr24:14383038-14383344 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 7-284 |
| Cow position: | chr24:29188877-29188582 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 54 |
| Conread position: | 7-295 |
| Cow position: | chr24:16560723-16561044 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 14, 315 |
| Conread position: | 16-285 |
| Cow position: | chr24:16098104-16097814 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 45, 68 |
| Conread position: | 19-284 |
| Cow position: | chr24:12163510-12163234 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 91, 26 |
| Conread position: | 19-284 |
| Cow position: | chr24:38639098-38638824 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 49 |
| Conread position: | 20-284 |
| Cow position: | chr24:35869001-35869271 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 74, 28 |
| Conread position: | 20-285 |
| Cow position: | chr24:19641249-19640966 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 52, 46 |
| Conread position: | 22-271 |
| Cow position: | chr24:6323784-6324049 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 52 |
| Conread position: | 22-284 |
| Cow position: | chr24:14388966-14389244 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 27-278 |
| Cow position: | chr24:14870762-14871028 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 46 |
| Conread position: | 28-279 |
| Cow position: | chr24:29304746-29305019 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 31-270 |
| Cow position: | chr24:6668185-6668427 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 73, 33 |
| Conread position: | 37-284 |
| Cow position: | chr24:38585565-38585830 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 54, 15 |
| Conread position: | 40-274 |
| Cow position: | chr24:36710119-36709886 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 51-278 |
| Cow position: | chr24:10222633-10222874 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 191 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 43, 15 |
| Conread position: | 59-275 |
| Cow position: | chr24:6658969-6659199 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 61-284 |
| Cow position: | chr24:1450937-1450710 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 33, 85 |
| Conread position: | 77-278 |
| Cow position: | chr24:6060704-6060492 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 150 |
| Conread position: | 100-284 |
| Cow position: | chr24:36558291-36558476 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 9, 72 |
| Conread position: | 113-284 |
| Cow position: | chr24:6668355-6668528 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 81, 155 |
Show alignments to all cow chromosomes.