Cow genome map
| Conread name: | reye1619b_p3r1.y1 |
| Conread position: | 1-97 |
| Cow position: | chr28:5814783-5814688 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 83 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 57, 28 |
| Conread position: | 1-184 |
| Cow position: | chr28:10067782-10067973 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 98, 48 |
| Conread position: | 1-237 |
| Cow position: | chr28:14752341-14752085 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-244 |
| Cow position: | chr28:1459651-1459386 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-244 |
| Cow position: | chr28:6537254-6537519 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-254 |
| Cow position: | chr28:6786811-6786548 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 61 |
| Conread position: | 1-266 |
| Cow position: | chr28:1385853-1386131 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 66 |
| Conread position: | 1-270 |
| Cow position: | chr28:10615445-10615724 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 24, 151 |
| Conread position: | 1-279 |
| Cow position: | chr28:1954911-1954611 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 24, 53 |
| Conread position: | 1-279 |
| Cow position: | chr28:21567001-21566717 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 217 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 93, 28 |
| Conread position: | 1-280 |
| Cow position: | chr28:25761025-25760759 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 220, 66 |
| Conread position: | 1-281 |
| Cow position: | chr28:484038-484340 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 187 |
| Conread position: | 1-282 |
| Cow position: | chr28:21361049-21360746 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 27 |
| Conread position: | 1-284 |
| Cow position: | chr28:784213-783909 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 231 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 24, 53 |
| Conread position: | 1-284 |
| Cow position: | chr28:2117533-2117230 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-284 |
| Cow position: | chr28:6778385-6778689 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 228 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 24, 69 |
| Conread position: | 1-284 |
| Cow position: | chr28:8719401-8719708 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 28 |
| Conread position: | 1-285 |
| Cow position: | chr28:5766288-5765983 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 286 |
| Conread position: | 1-285 |
| Cow position: | chr28:9336976-9337276 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-285 |
| Cow position: | chr28:18146184-18146487 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 22, 165 |
| Conread position: | 1-291 |
| Cow position: | chr28:25168587-25168871 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 21, 53 |
| Conread position: | 1-294 |
| Cow position: | chr28:24669154-24668854 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 41 |
| Conread position: | 1-295 |
| Cow position: | chr28:5799848-5799536 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 267 |
| Conread position: | 1-295 |
| Cow position: | chr28:22231732-22232035 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 240 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 56, 131 |
| Conread position: | 1-303 |
| Cow position: | chr28:22041729-22042052 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 237 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 24, 302 |
| Conread position: | 1-303 |
| Cow position: | chr28:24590413-24590092 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 267 |
| Conread position: | 3-194 |
| Cow position: | chr28:698830-698630 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 53, 182 |
| Conread position: | 4-280 |
| Cow position: | chr28:10645882-10646170 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 223 |
| Conread position: | 4-309 |
| Cow position: | chr28:7827538-7827215 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 21, 50 |
| Conread position: | 7-164 |
| Cow position: | chr28:1813383-1813548 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 48 |
| Conread position: | 7-194 |
| Cow position: | chr28:33638094-33637889 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 7-224 |
| Cow position: | chr28:15034561-15034793 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 7-228 |
| Cow position: | chr28:10471208-10470978 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 87, 46 |
| Conread position: | 7-228 |
| Cow position: | chr28:12151875-12151645 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 18, 49 |
| Conread position: | 7-244 |
| Cow position: | chr28:8380587-8380341 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 194 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 18, 209 |
| Conread position: | 7-257 |
| Cow position: | chr28:5112574-5112838 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 200 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 18, 220 |
| Conread position: | 7-263 |
| Cow position: | chr28:34595782-34595505 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 7-278 |
| Cow position: | chr28:1166344-1166626 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 87, 206 |
| Conread position: | 7-282 |
| Cow position: | chr28:17665757-17666052 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 7-282 |
| Cow position: | chr28:29821541-29821250 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 18, 46 |
| Conread position: | 7-284 |
| Cow position: | chr28:1506416-1506119 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 7-284 |
| Cow position: | chr28:2086015-2085711 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 7-284 |
| Cow position: | chr28:3190702-3191003 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 7-284 |
| Cow position: | chr28:5567674-5567389 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 55 |
| Conread position: | 7-284 |
| Cow position: | chr28:5750153-5750455 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 7-284 |
| Cow position: | chr28:5939038-5938736 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 7-284 |
| Cow position: | chr28:7741982-7741694 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 7-284 |
| Cow position: | chr28:10580324-10580629 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 18, 75 |
| Conread position: | 7-284 |
| Cow position: | chr28:13461521-13461228 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 7-284 |
| Cow position: | chr28:17389951-17389653 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 7-284 |
| Cow position: | chr28:18518897-18519199 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 7-284 |
| Cow position: | chr28:22259604-22259899 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 222 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 18, 49 |
| Conread position: | 7-284 |
| Cow position: | chr28:26424712-26425002 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 60, 45 |
| Conread position: | 7-284 |
| Cow position: | chr28:33253864-33253558 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 229 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 18, 190 |
| Conread position: | 7-288 |
| Cow position: | chr28:1216285-1216592 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 50 |
| Conread position: | 7-291 |
| Cow position: | chr28:7003546-7003241 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 8-284 |
| Cow position: | chr28:32790843-32791129 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 61 |
| Conread position: | 9-284 |
| Cow position: | chr28:12408677-12408985 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 9-284 |
| Cow position: | chr28:14703835-14704135 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 15, 186 |
| Conread position: | 19-270 |
| Cow position: | chr28:18099963-18100217 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 73, 34 |
| Conread position: | 19-303 |
| Cow position: | chr28:9180152-9179848 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 34, 282 |
| Conread position: | 22-281 |
| Cow position: | chr28:5803552-5803295 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 72, 127 |
| Conread position: | 24-228 |
| Cow position: | chr28:24884439-24884225 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 29, 153 |
| Conread position: | 29-285 |
| Cow position: | chr28:15684975-15684709 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 184 |
| Conread position: | 41-279 |
| Cow position: | chr28:12648163-12648422 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 64-266 |
| Cow position: | chr28:5912994-5913188 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 90, 35 |
| Conread position: | 73-284 |
| Cow position: | chr28:10496064-10496280 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 21, 57 |
| Conread position: | 131-314 |
| Cow position: | chr28:7788488-7788674 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 158 |
Show alignments to all cow chromosomes.