Cow genome map

Conread name: reye1619b_p3r1.y1

Conread position: 1-97
Cow position: chr4:28832956-28832858 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 84
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 1-166
Cow position: chr4:16060518-16060337 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 1-172
Cow position: chr4:20236159-20236345 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 144
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 1-172
Cow position: chr4:21258392-21258215 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 24, 71

Conread position: 1-186
Cow position: chr4:604869-604669 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 152
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 24, 191

Conread position: 1-197
Cow position: chr4:28653253-28653465 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 162
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 24, 0

Conread position: 1-201
Cow position: chr4:17502092-17502308 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 164
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 24, 0

Conread position: 1-213
Cow position: chr4:19742690-19742907 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 74

Conread position: 1-221
Cow position: chr4:6865268-6865504 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 181
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 24, 0

Conread position: 1-224
Cow position: chr4:49717009-49716784 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 179
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 93, 6

Conread position: 1-228
Cow position: chr4:1952328-1952569 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 180
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 24, 81

Conread position: 1-240
Cow position: chr4:65665155-65665415 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 197
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 24, 0

Conread position: 1-250
Cow position: chr4:33596762-33596513 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 182
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 41, 28

Conread position: 1-271
Cow position: chr4:47522597-47522305 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 201
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 1-275
Cow position: chr4:69521760-69521482 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 213
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 91, 144

Conread position: 1-278
Cow position: chr4:51042049-51042351 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 221
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 24, 271

Conread position: 1-279
Cow position: chr4:9355618-9355319 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 221
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 17, 73

Conread position: 1-279
Cow position: chr4:30472452-30472174 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 209
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 24, 111

Conread position: 1-279
Cow position: chr4:54969953-54969670 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 220
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 23, 12

Conread position: 1-280
Cow position: chr4:6567618-6567327 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 258

Conread position: 1-280
Cow position: chr4:14755435-14755728 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 69

Conread position: 1-280
Cow position: chr4:14819660-14819928 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 218
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 23, 144

Conread position: 1-281
Cow position: chr4:5881395-5881096 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 34

Conread position: 1-281
Cow position: chr4:61693280-61693581 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 222
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 22, 156

Conread position: 1-282
Cow position: chr4:34183418-34183687 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 63

Conread position: 1-284
Cow position: chr4:5443586-5443895 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 1-284
Cow position: chr4:34178008-34178299 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 21

Conread position: 1-284
Cow position: chr4:41956002-41955697 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 229
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 24, 196

Conread position: 1-284
Cow position: chr4:41960139-41959832 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 196

Conread position: 1-284
Cow position: chr4:46665772-46665463 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 220
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 24, 196

Conread position: 1-284
Cow position: chr4:60262923-60263223 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 232
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 28, 66

Conread position: 1-285
Cow position: chr4:9846968-9847278 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 1-285
Cow position: chr4:57958215-57957932 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 217
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 52, 14

Conread position: 1-288
Cow position: chr4:13958409-13958108 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 218
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 23, 0

Conread position: 1-295
Cow position: chr4:44726817-44726515 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 236
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 24, 158

Conread position: 1-303
Cow position: chr4:98978-99296 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 237
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 24, 219

Conread position: 1-303
Cow position: chr4:160396-160082 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 231
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 24, 215

Conread position: 1-303
Cow position: chr4:3127050-3126724 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 243
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 24, 305

Conread position: 1-303
Cow position: chr4:4417296-4416979 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 187

Conread position: 1-303
Cow position: chr4:18423281-18423603 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 242
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 52, 12

Conread position: 1-303
Cow position: chr4:32213411-32213084 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 244
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 24, 146

Conread position: 1-313
Cow position: chr4:17092623-17092955 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 301

Conread position: 1-313
Cow position: chr4:18338093-18337762 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 245
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 24, 267

Conread position: 2-201
Cow position: chr4:14387059-14386844 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 23, 0

Conread position: 2-279
Cow position: chr4:45106704-45106402 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 226
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 23, 0

Conread position: 2-285
Cow position: chr4:41191363-41191667 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 235
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 7, 19

Conread position: 4-276
Cow position: chr4:20067491-20067775 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 215
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 21, 53

Conread position: 7-192
Cow position: chr4:3356700-3356897 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 7-252
Cow position: chr4:25598252-25598518 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 206
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 18, 0

Conread position: 7-271
Cow position: chr4:33494788-33494495 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 219
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 18, 0

Conread position: 7-276
Cow position: chr4:42405842-42405552 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 7-284
Cow position: chr4:1049030-1049323 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 49

Conread position: 7-284
Cow position: chr4:6489133-6489426 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 210
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 18, 49

Conread position: 7-284
Cow position: chr4:12239991-12240281 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 49

Conread position: 7-284
Cow position: chr4:12588561-12588268 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 221
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 18, 49

Conread position: 7-284
Cow position: chr4:16639843-16639549 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 151

Conread position: 7-284
Cow position: chr4:17924728-17925029 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 226
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 18, 0

Conread position: 7-284
Cow position: chr4:26876550-26876843 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 7-284
Cow position: chr4:31564050-31564367 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 236
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 13, 0

Conread position: 7-284
Cow position: chr4:33071601-33071889 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 92

Conread position: 7-284
Cow position: chr4:36897609-36897311 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 7-284
Cow position: chr4:43318403-43318703 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 7-284
Cow position: chr4:43882338-43882041 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 225
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 18, 47

Conread position: 7-284
Cow position: chr4:57985225-57984923 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 7-294
Cow position: chr4:357138-356837 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 221
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 32, 22

Conread position: 7-295
Cow position: chr4:10882781-10882477 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 232
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 15, 48

Conread position: 7-295
Cow position: chr4:13494559-13494258 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 48

Conread position: 9-285
Cow position: chr4:39267926-39268216 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 201
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 23, 45

Conread position: 14-276
Cow position: chr4:6206827-6206550 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 198
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 13, 157

Conread position: 19-201
Cow position: chr4:27335149-27334954 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 34, 0

Conread position: 19-220
Cow position: chr4:21359444-21359232 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 163
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 75, 32

Conread position: 19-281
Cow position: chr4:1929417-1929701 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 214
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 39, 0

Conread position: 19-282
Cow position: chr4:4178467-4178196 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 197
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 75, 44

Conread position: 19-284
Cow position: chr4:67682415-67682131 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 20-299
Cow position: chr4:44780003-44780303 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 224
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 33, 0

Conread position: 22-241
Cow position: chr4:31638711-31638938 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 72, 123

Conread position: 25-314
Cow position: chr4:530616-530313 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 222
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 28, 41

Conread position: 28-278
Cow position: chr4:19005103-19005368 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 235

Conread position: 30-279
Cow position: chr4:14139248-14138982 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 205
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 6, 101

Conread position: 45-284
Cow position: chr4:68109837-68110094 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 194
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 49, 0

Conread position: 52-277
Cow position: chr4:22474534-22474290 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 170
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 51, 233

Conread position: 58-286
Cow position: chr4:44924360-44924599 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 169
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 51, 102

Conread position: 69-285
Cow position: chr4:11110115-11110344 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 78-266
Cow position: chr4:28832702-28832511 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 155
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 23, 137

Show alignments to all cow chromosomes.