Cow genome map

Conread name: reye1621b_i18.y1

Conread position: 5-309
Cow position: chr11:8266700-8267003 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 174

Conread position: 6-352
Cow position: chr11:41177805-41178156 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 128

Conread position: 23-352
Cow position: chr11:40133920-40133596 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 158

Conread position: 128-352
Cow position: chr11:10214530-10214316 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 72, 0

Conread position: 187-350
Cow position: chr11:14650197-14650034 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 74, 7

Conread position: 188-346
Cow position: chr11:37345982-37346141 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 73, 23

Conread position: 193-352
Cow position: chr11:32068212-32068052 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 68, 14

Conread position: 196-352
Cow position: chr11:44488041-44488204 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 20, 100

Conread position: 200-352
Cow position: chr11:34842103-34841944 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 208-352
Cow position: chr11:25336197-25336342 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 53, 22

Conread position: 209-352
Cow position: chr11:9153843-9153703 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 106
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 210-352
Cow position: chr11:8366617-8366764 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chr11:15495445-15495592 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chr11:23904339-23904486 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chr11:25759800-25759946 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chr11:26592720-26592573 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chr11:47972795-47972648 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chr11:52846532-52846679 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chr11:57625133-57624986 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chr11:62009744-62009597 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chr11:74990677-74990824 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 211-352
Cow position: chr11:77746145-77746002 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 52, 19

Conread position: 212-346
Cow position: chr11:8499125-8499265 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 13, 39

Conread position: 212-350
Cow position: chr11:45632895-45632754 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 49, 18

Conread position: 213-351
Cow position: chr11:1268446-1268302 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr11:10043303-10043448 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 213-352
Cow position: chr11:10100107-10100252 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr11:10698687-10698542 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr11:34638445-34638300 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr11:40139511-40139367 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 213-352
Cow position: chr11:41314354-41314499 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr11:43510916-43510771 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr11:51034335-51034480 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr11:67920279-67920138 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 48, 17

Conread position: 213-352
Cow position: chr11:75256249-75256394 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr11:83001088-83001233 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 215-347
Cow position: chr11:9432440-9432573 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 46, 15

Conread position: 216-344
Cow position: chr11:11592043-11592176 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 216-344
Cow position: chr11:47757925-47757792 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 216-352
Cow position: chr11:4267092-4266951 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 216-352
Cow position: chr11:36930471-36930330 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 216-352
Cow position: chr11:40773007-40772866 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 217-340
Cow position: chr11:71271966-71271840 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 218-352
Cow position: chr11:71078489-71078629 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 15, 0

Conread position: 220-352
Cow position: chr11:38505163-38505027 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 220-352
Cow position: chr11:40402703-40402570 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 13, 27

Conread position: 226-340
Cow position: chr11:21853177-21853059 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 99
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 226-346
Cow position: chr11:53772747-53772865 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 8, 40

Conread position: 226-349
Cow position: chr11:8246257-8246384 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 226-350
Cow position: chr11:9388411-9388539 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 226-350
Cow position: chr11:56228003-56228130 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 117

Conread position: 226-352
Cow position: chr11:7719441-7719311 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 7, 0

Conread position: 226-352
Cow position: chr11:23883421-23883551 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 226-352
Cow position: chr11:31236329-31236199 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 226-352
Cow position: chr11:31836258-31836388 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 226-352
Cow position: chr11:52127915-52127786 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 7, 15

Conread position: 226-352
Cow position: chr11:67848898-67848768 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 110
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 7, 0

Conread position: 226-352
Cow position: chr11:70602209-70602079 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 226-352
Cow position: chr11:72313665-72313795 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 226-352
Cow position: chr11:73513298-73513166 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 226-352
Cow position: chr11:77034018-77033888 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 226-352
Cow position: chr11:85390788-85390658 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 7, 0

Conread position: 227-352
Cow position: chr11:4024279-4024151 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 233-348
Cow position: chr11:41167612-41167494 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr11:2285795-2285917 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr11:5273492-5273370 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 233-352
Cow position: chr11:5482364-5482242 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr11:7229442-7229564 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 233-352
Cow position: chr11:12353810-12353688 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 233-352
Cow position: chr11:17854176-17854298 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr11:18920515-18920394 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 28, 58

Conread position: 233-352
Cow position: chr11:19060992-19060870 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr11:19099403-19099281 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 233-352
Cow position: chr11:26121838-26121716 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr11:27724819-27724697 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 233-352
Cow position: chr11:30200617-30200495 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr11:30700576-30700698 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr11:32077701-32077579 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr11:33601557-33601435 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr11:35738262-35738140 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 233-352
Cow position: chr11:58139776-58139898 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr11:62791977-62792098 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 233-352
Cow position: chr11:65282092-65282214 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr11:67295925-67295803 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 235-352
Cow position: chr11:13087583-13087463 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 235-352
Cow position: chr11:41024903-41025020 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 236-352
Cow position: chr11:46780985-46780866 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 25, 0

Show alignments to all cow chromosomes.