Cow genome map
| Conread name: | reye1621b_i18.y1 |
| Conread position: | 4-302 |
| Cow position: | chr15:4654301-4654589 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 0 |
| Conread position: | 15-314 |
| Cow position: | chr15:3653232-3652941 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 139, 49 |
| Conread position: | 188-352 |
| Cow position: | chr15:4933373-4933538 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 44 |
| Conread position: | 188-352 |
| Cow position: | chr15:5243065-5242901 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 76, 23 |
| Conread position: | 188-352 |
| Cow position: | chr15:20173008-20172843 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 77, 44 |
| Conread position: | 188-352 |
| Cow position: | chr15:21533149-21532984 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 73, 44 |
| Conread position: | 192-352 |
| Cow position: | chr15:8046506-8046669 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 21 |
| Conread position: | 199-352 |
| Cow position: | chr15:42154770-42154926 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 205-352 |
| Cow position: | chr15:22539834-22539686 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 25 |
| Conread position: | 208-344 |
| Cow position: | chr15:363970-363833 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 209-352 |
| Cow position: | chr15:52208492-52208344 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 210-352 |
| Cow position: | chr15:2796352-2796496 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 210-352 |
| Cow position: | chr15:3007833-3007686 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 210-352 |
| Cow position: | chr15:4822065-4821918 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 210-352 |
| Cow position: | chr15:6537857-6537712 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 120 |
| Conread position: | 210-352 |
| Cow position: | chr15:7263948-7264094 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 210-352 |
| Cow position: | chr15:10034648-10034501 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 210-352 |
| Cow position: | chr15:12859147-12859294 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 210-352 |
| Cow position: | chr15:20647170-20647317 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 210-352 |
| Cow position: | chr15:25132968-25133115 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 213-352 |
| Cow position: | chr15:2644338-2644195 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 17, 37 |
| Conread position: | 213-352 |
| Cow position: | chr15:6805721-6805866 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 213-352 |
| Cow position: | chr15:20404675-20404530 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 213-352 |
| Cow position: | chr15:48556727-48556872 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 213-352 |
| Cow position: | chr15:49306803-49306946 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 97 |
| Conread position: | 215-352 |
| Cow position: | chr15:15344097-15343955 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 216-345 |
| Cow position: | chr15:8753873-8754006 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 216-352 |
| Cow position: | chr15:609105-608967 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 10, 97 |
| Conread position: | 216-352 |
| Cow position: | chr15:7271350-7271492 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 216-352 |
| Cow position: | chr15:47842102-47842239 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 27 |
| Conread position: | 218-352 |
| Cow position: | chr15:4815561-4815696 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 16, 71 |
| Conread position: | 220-345 |
| Cow position: | chr15:10243135-10243266 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 221-352 |
| Cow position: | chr15:33455380-33455515 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 225-351 |
| Cow position: | chr15:2928281-2928410 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 36, 90 |
| Conread position: | 226-341 |
| Cow position: | chr15:39407251-39407132 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 226-344 |
| Cow position: | chr15:21607797-21607919 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 226-346 |
| Cow position: | chr15:6648393-6648267 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 226-346 |
| Cow position: | chr15:7941440-7941563 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 7, 108 |
| Conread position: | 226-352 |
| Cow position: | chr15:6164081-6163951 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 226-352 |
| Cow position: | chr15:7319588-7319718 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 226-352 |
| Cow position: | chr15:26388945-26388816 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 226-352 |
| Cow position: | chr15:37382566-37382434 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 226-352 |
| Cow position: | chr15:47201552-47201422 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 227-352 |
| Cow position: | chr15:49191541-49191413 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 233-347 |
| Cow position: | chr15:18579753-18579870 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-347 |
| Cow position: | chr15:20413605-20413722 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-352 |
| Cow position: | chr15:561757-561879 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-352 |
| Cow position: | chr15:2899227-2899105 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-352 |
| Cow position: | chr15:6152613-6152491 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-352 |
| Cow position: | chr15:11596351-11596229 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-352 |
| Cow position: | chr15:19734768-19734646 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-352 |
| Cow position: | chr15:24569022-24568900 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-352 |
| Cow position: | chr15:27747489-27747365 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-352 |
| Cow position: | chr15:35750266-35750144 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-352 |
| Cow position: | chr15:50151730-50151852 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 235-340 |
| Cow position: | chr15:32225741-32225846 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 235-352 |
| Cow position: | chr15:44073478-44073598 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 237-352 |
| Cow position: | chr15:42727412-42727527 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.