Cow genome map
| Conread name: | reye1621b_i18.y1 |
| Conread position: | 4-341 |
| Cow position: | chr5:57936118-57935797 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 257, 179 |
| Conread position: | 31-352 |
| Cow position: | chr5:6840171-6839869 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 230, 70 |
| Conread position: | 57-350 |
| Cow position: | chr5:39936122-39936420 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 14, 69 |
| Conread position: | 183-352 |
| Cow position: | chr5:56442412-56442581 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 77, 47 |
| Conread position: | 187-352 |
| Cow position: | chr5:15477864-15478032 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 29 |
| Conread position: | 188-340 |
| Cow position: | chr5:31217251-31217405 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 73, 42 |
| Conread position: | 188-346 |
| Cow position: | chr5:29763070-29763225 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 73, 44 |
| Conread position: | 188-347 |
| Cow position: | chr5:34527726-34527885 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 73, 42 |
| Conread position: | 188-352 |
| Cow position: | chr5:49117192-49117027 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 73, 23 |
| Conread position: | 193-352 |
| Cow position: | chr5:49221335-49221175 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 68, 41 |
| Conread position: | 206-352 |
| Cow position: | chr5:44617322-44617469 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 55, 24 |
| Conread position: | 206-352 |
| Cow position: | chr5:58353382-58353529 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 6, 25 |
| Conread position: | 208-350 |
| Cow position: | chr5:54125247-54125392 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 32, 128 |
| Conread position: | 208-352 |
| Cow position: | chr5:45705189-45705335 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 12 |
| Conread position: | 209-352 |
| Cow position: | chr5:7175477-7175622 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 10 |
| Conread position: | 210-351 |
| Cow position: | chr5:10542499-10542353 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 210-352 |
| Cow position: | chr5:4015695-4015548 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 210-352 |
| Cow position: | chr5:5106401-5106547 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 210-352 |
| Cow position: | chr5:14543124-14542977 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 210-352 |
| Cow position: | chr5:27907291-27907144 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 210-352 |
| Cow position: | chr5:37380263-37380410 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 211-340 |
| Cow position: | chr5:14904899-14904767 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 212-352 |
| Cow position: | chr5:17425971-17425825 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 212-352 |
| Cow position: | chr5:29256036-29255890 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 212-352 |
| Cow position: | chr5:49429152-49429009 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 213-352 |
| Cow position: | chr5:742281-742136 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 213-352 |
| Cow position: | chr5:3500949-3500804 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 213-352 |
| Cow position: | chr5:12133772-12133917 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 213-352 |
| Cow position: | chr5:18667486-18667631 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 213-352 |
| Cow position: | chr5:20107848-20107706 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 213-352 |
| Cow position: | chr5:29634608-29634753 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 213-352 |
| Cow position: | chr5:41586453-41586598 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 213-352 |
| Cow position: | chr5:45179668-45179523 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 213-352 |
| Cow position: | chr5:52829607-52829463 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 12, 108 |
| Conread position: | 213-352 |
| Cow position: | chr5:54951943-54951798 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 213-352 |
| Cow position: | chr5:58199188-58199333 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 213-352 |
| Cow position: | chr5:59064623-59064767 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 215-352 |
| Cow position: | chr5:14558277-14558134 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 215-352 |
| Cow position: | chr5:18404875-18404734 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 215-352 |
| Cow position: | chr5:47704974-47704834 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 219-352 |
| Cow position: | chr5:31709487-31709624 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 220-352 |
| Cow position: | chr5:7042430-7042565 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 221-352 |
| Cow position: | chr5:59268599-59268734 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 225-352 |
| Cow position: | chr5:14551407-14551277 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 226-344 |
| Cow position: | chr5:18901514-18901635 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 226-344 |
| Cow position: | chr5:47871914-47871792 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 226-351 |
| Cow position: | chr5:46707831-46707959 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 7, 110 |
| Conread position: | 226-352 |
| Cow position: | chr5:411525-411395 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 226-352 |
| Cow position: | chr5:3544490-3544620 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 226-352 |
| Cow position: | chr5:16085616-16085486 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 226-352 |
| Cow position: | chr5:46676807-46676937 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 226-352 |
| Cow position: | chr5:53185309-53185179 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 226-352 |
| Cow position: | chr5:54868410-54868540 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 226-352 |
| Cow position: | chr5:68593617-68593744 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 230-352 |
| Cow position: | chr5:4388383-4388505 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 230-352 |
| Cow position: | chr5:41951865-41951741 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 30, 101 |
| Conread position: | 233-346 |
| Cow position: | chr5:19978712-19978596 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-350 |
| Cow position: | chr5:18118773-18118653 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-350 |
| Cow position: | chr5:29742359-29742239 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 233-351 |
| Cow position: | chr5:43437740-43437619 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-352 |
| Cow position: | chr5:279978-279856 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-352 |
| Cow position: | chr5:1338719-1338597 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-352 |
| Cow position: | chr5:6151630-6151508 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-352 |
| Cow position: | chr5:7396445-7396567 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-352 |
| Cow position: | chr5:7498783-7498661 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-352 |
| Cow position: | chr5:10772628-10772506 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-352 |
| Cow position: | chr5:11780679-11780560 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 233-352 |
| Cow position: | chr5:12325387-12325265 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-352 |
| Cow position: | chr5:14636377-14636255 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 233-352 |
| Cow position: | chr5:18250254-18250371 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 233-352 |
| Cow position: | chr5:24299215-24299337 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-352 |
| Cow position: | chr5:30582528-30582650 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-352 |
| Cow position: | chr5:34708971-34709093 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-352 |
| Cow position: | chr5:36724523-36724404 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 233-352 |
| Cow position: | chr5:47343075-47343197 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-352 |
| Cow position: | chr5:51166108-51165986 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 233-352 |
| Cow position: | chr5:54785906-54785784 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 233-352 |
| Cow position: | chr5:55631266-55631388 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 233-352 |
| Cow position: | chr5:58770670-58770548 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 233-352 |
| Cow position: | chr5:73485684-73485562 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 235-351 |
| Cow position: | chr5:44709168-44709049 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 237-352 |
| Cow position: | chr5:21189424-21189542 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
Show alignments to all cow chromosomes.