Cow genome map

Conread name: reye1621b_i18.y1

Conread position: 4-341
Cow position: chr6:1105008-1104689 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 225
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 136, 38

Conread position: 4-350
Cow position: chr6:32018970-32018643 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 251
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 164, 12

Conread position: 6-352
Cow position: chr6:27172974-27173304 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 244
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 255, 143

Conread position: 9-351
Cow position: chr6:47380814-47381146 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 225
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 135, 101

Conread position: 135-352
Cow position: chr6:57585242-57585019 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 63, 70

Conread position: 188-351
Cow position: chr6:3272184-3272020 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 73, 44

Conread position: 188-352
Cow position: chr6:3485121-3484956 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 67, 44

Conread position: 207-341
Cow position: chr6:34075187-34075324 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 207-350
Cow position: chr6:14928764-14928912 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 209-352
Cow position: chr6:43187427-43187572 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 55, 11

Conread position: 210-352
Cow position: chr6:17049689-17049836 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chr6:67553548-67553695 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 211-340
Cow position: chr6:19059596-19059727 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 50, 23

Conread position: 211-352
Cow position: chr6:41409920-41410064 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 211-352
Cow position: chr6:51877074-51877218 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 50, 23

Conread position: 212-323
Cow position: chr6:1109330-1109442 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 18

Conread position: 213-347
Cow position: chr6:539454-539595 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 213-350
Cow position: chr6:23568275-23568132 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr6:11453549-11453404 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr6:12997737-12997882 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr6:19712927-19712782 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr6:22043691-22043546 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr6:22737388-22737243 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr6:25374790-25374645 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr6:46225644-46225502 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr6:57857088-57857233 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr6:62665093-62665238 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 215-346
Cow position: chr6:64719638-64719773 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 215-352
Cow position: chr6:20552923-20552780 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 216-352
Cow position: chr6:1274523-1274391 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 216-352
Cow position: chr6:16593271-16593411 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 220-352
Cow position: chr6:4903674-4903538 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 14, 53

Conread position: 225-352
Cow position: chr6:47977265-47977396 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 226-341
Cow position: chr6:19044539-19044655 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 8, 89

Conread position: 226-345
Cow position: chr6:6471603-6471481 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 7, 118

Conread position: 226-347
Cow position: chr6:7175319-7175194 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 226-350
Cow position: chr6:33301001-33301129 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 226-352
Cow position: chr6:8754122-8753992 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 226-352
Cow position: chr6:10266794-10266664 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 226-352
Cow position: chr6:40550367-40550237 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 226-352
Cow position: chr6:47574123-47574252 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 6, 89

Conread position: 226-352
Cow position: chr6:48872991-48872861 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 8, 0

Conread position: 226-352
Cow position: chr6:50571524-50571654 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 226-352
Cow position: chr6:55593403-55593533 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 226-352
Cow position: chr6:58031110-58031239 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 8, 110

Conread position: 227-352
Cow position: chr6:39997751-39997622 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 230-352
Cow position: chr6:51674104-51674229 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 232-352
Cow position: chr6:24242627-24242750 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 34, 0

Conread position: 233-351
Cow position: chr6:1263497-1263618 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 233-351
Cow position: chr6:36531615-36531736 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr6:706339-706461 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr6:11389273-11389151 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr6:17111825-17111703 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr6:17121730-17121852 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr6:21857031-21856912 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 233-352
Cow position: chr6:37387907-37388029 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr6:38873187-38873065 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr6:39331192-39331070 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr6:39999118-39998996 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr6:40813702-40813824 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr6:44017487-44017365 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 233-352
Cow position: chr6:51733422-51733544 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr6:55239031-55239153 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 233-352
Cow position: chr6:60876637-60876759 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 234-352
Cow position: chr6:182210-182090 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 235-346
Cow position: chr6:49442285-49442400 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 249-352
Cow position: chr6:55169830-55169936 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 12, 0

Show alignments to all cow chromosomes.