Cow genome map

Conread name: reye1621b_i18.y1

Conread position: 4-344
Cow position: chr9:825853-825523 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 137

Conread position: 4-350
Cow position: chr9:4191353-4191707 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 0

Conread position: 5-352
Cow position: chr9:27898079-27898420 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 152

Conread position: 6-347
Cow position: chr9:52408256-52407936 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 248
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 31, 60

Conread position: 125-335
Cow position: chr9:47545805-47546027 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 69, 164

Conread position: 188-347
Cow position: chr9:25959451-25959286 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 193-350
Cow position: chr9:29184221-29184380 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 47, 19

Conread position: 193-352
Cow position: chr9:2681720-2681880 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 68, 39

Conread position: 196-352
Cow position: chr9:54413382-54413218 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 203-352
Cow position: chr9:10567122-10566969 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 210-352
Cow position: chr9:2873720-2873867 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chr9:3061832-3061979 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chr9:10634159-10634307 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 210-352
Cow position: chr9:12378693-12378837 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chr9:28785588-28785734 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 210-352
Cow position: chr9:34238514-34238367 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chr9:44202835-44202688 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 211-352
Cow position: chr9:17633736-17633879 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 50, 19

Conread position: 211-352
Cow position: chr9:21841335-21841192 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 211-352
Cow position: chr9:28025068-28025212 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 212-347
Cow position: chr9:30737265-30737129 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 20

Conread position: 212-350
Cow position: chr9:12161846-12161986 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 77

Conread position: 212-352
Cow position: chr9:4553047-4553185 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 49, 22

Conread position: 213-350
Cow position: chr9:45975089-45974946 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr9:1740312-1740168 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 12, 98

Conread position: 213-352
Cow position: chr9:1838198-1838342 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 12, 39

Conread position: 213-352
Cow position: chr9:3058378-3058233 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 213-352
Cow position: chr9:10802920-10803064 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr9:26325993-26326137 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 213-352
Cow position: chr9:37174158-37174013 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr9:37908094-37908239 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr9:49221020-49220875 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr9:59454650-59454505 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chr9:64011982-64011837 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 215-352
Cow position: chr9:17302729-17302588 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 215-352
Cow position: chr9:30675323-30675466 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 219-352
Cow position: chr9:3311543-3311680 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 220-352
Cow position: chr9:28657801-28657665 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 220-352
Cow position: chr9:47996151-47996015 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 112
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 13, 0

Conread position: 220-352
Cow position: chr9:58674652-58674517 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 14, 34

Conread position: 222-352
Cow position: chr9:199569-199435 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 225-347
Cow position: chr9:3806856-3806981 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 226-337
Cow position: chr9:13220799-13220915 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 226-347
Cow position: chr9:9442712-9442837 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 226-350
Cow position: chr9:16178846-16178974 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 226-352
Cow position: chr9:2200853-2200983 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 226-352
Cow position: chr9:5414789-5414659 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 226-352
Cow position: chr9:6365638-6365768 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 7, 0

Conread position: 226-352
Cow position: chr9:14045927-14046057 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 7, 0

Conread position: 226-352
Cow position: chr9:33999494-33999626 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 226-352
Cow position: chr9:42868610-42868480 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 226-352
Cow position: chr9:59479595-59479465 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 230-352
Cow position: chr9:2548428-2548306 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 230-352
Cow position: chr9:3756572-3756447 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 230-352
Cow position: chr9:12195190-12195065 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 230-352
Cow position: chr9:49981763-49981888 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 233-352
Cow position: chr9:1991284-1991162 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr9:2618515-2618393 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 233-352
Cow position: chr9:6252834-6252956 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr9:6764499-6764377 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr9:9016344-9016466 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr9:17018024-17018146 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr9:22656068-22656190 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr9:27781642-27781520 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr9:29106145-29106267 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 233-352
Cow position: chr9:31810847-31810969 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr9:32972636-32972758 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr9:37158342-37158220 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr9:38634049-38634171 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr9:42570485-42570607 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chr9:43302331-43302212 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 235-350
Cow position: chr9:19156020-19155902 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 235-352
Cow position: chr9:24918016-24917896 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 27, 0

Show alignments to all cow chromosomes.