Cow genome map

Conread name: reye1621b_i18.y1

Conread position: 155-345
Cow position: chrX:12289826-12290015 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 106, 22

Conread position: 188-352
Cow position: chrX:7755041-7755205 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 73, 44

Conread position: 188-352
Cow position: chrX:8529675-8529840 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 119
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 73, 44

Conread position: 193-340
Cow position: chrX:37488869-37489018 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 68, 37

Conread position: 194-352
Cow position: chrX:160569-160731 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 67, 141

Conread position: 205-352
Cow position: chrX:39387280-39387130 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 28, 15

Conread position: 206-352
Cow position: chrX:3649669-3649523 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 55, 26

Conread position: 207-352
Cow position: chrX:5280702-5280553 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 208-352
Cow position: chrX:30144134-30143984 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 210-350
Cow position: chrX:11950333-11950188 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chrX:6372333-6372480 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chrX:11976293-11976146 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chrX:12346049-12346196 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chrX:14162345-14162492 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 210-352
Cow position: chrX:16359854-16359707 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chrX:16465454-16465600 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 17, 141

Conread position: 210-352
Cow position: chrX:16525943-16526090 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chrX:26974063-26974210 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chrX:30139631-30139484 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chrX:35533007-35533154 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 210-352
Cow position: chrX:37815744-37815891 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 211-352
Cow position: chrX:18222566-18222713 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 212-352
Cow position: chrX:12178833-12178979 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 213-350
Cow position: chrX:35609141-35609284 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 213-351
Cow position: chrX:7484962-7485106 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chrX:2559805-2559660 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chrX:11566069-11566214 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 213-352
Cow position: chrX:13071425-13071280 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chrX:13091985-13091840 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chrX:14050039-14049894 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chrX:18023837-18023692 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chrX:19398933-19399078 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chrX:19608831-19608976 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chrX:22077187-22077042 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 213-352
Cow position: chrX:34518881-34519026 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 215-341
Cow position: chrX:22819235-22819369 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 215-344
Cow position: chrX:1947790-1947658 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 215-344
Cow position: chrX:34221922-34222058 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 215-352
Cow position: chrX:22538876-22538733 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 216-352
Cow position: chrX:16688427-16688568 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 216-352
Cow position: chrX:21582602-21582743 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 216-352
Cow position: chrX:23317253-23317112 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 11, 0

Conread position: 216-352
Cow position: chrX:25459480-25459338 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 216-352
Cow position: chrX:39556633-39556495 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 14

Conread position: 216-352
Cow position: chrX:42222614-42222475 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 11, 115

Conread position: 219-346
Cow position: chrX:35024223-35024354 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 15, 84

Conread position: 219-352
Cow position: chrX:24173998-24173861 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 220-344
Cow position: chrX:21592455-21592583 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 220-346
Cow position: chrX:1056222-1056092 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 220-352
Cow position: chrX:24588571-24588436 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 220-352
Cow position: chrX:41847366-41847230 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 20, 0

Conread position: 221-352
Cow position: chrX:26447244-26447379 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 223-352
Cow position: chrX:17054736-17054869 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 224-352
Cow position: chrX:21662205-21662336 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 224-352
Cow position: chrX:35408806-35408934 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 39, 11

Conread position: 225-336
Cow position: chrX:3406172-3406057 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 225-352
Cow position: chrX:3569221-3569351 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 225-352
Cow position: chrX:23572647-23572516 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 225-352
Cow position: chrX:34442272-34442142 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 36, 0

Conread position: 226-344
Cow position: chrX:24316994-24317114 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 35, 14

Conread position: 226-346
Cow position: chrX:38150858-38150982 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 226-347
Cow position: chrX:29779893-29780018 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 226-350
Cow position: chrX:27590860-27590732 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 7, 0

Conread position: 226-350
Cow position: chrX:28624591-28624463 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 226-352
Cow position: chrX:7551631-7551501 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 226-352
Cow position: chrX:12465202-12465332 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 226-352
Cow position: chrX:18898479-18898349 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 8, 0

Conread position: 226-352
Cow position: chrX:19657667-19657797 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 226-352
Cow position: chrX:21685789-21685919 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 226-352
Cow position: chrX:27095299-27095429 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 226-352
Cow position: chrX:27977664-27977534 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 226-352
Cow position: chrX:39702024-39702154 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 7, 0

Conread position: 230-350
Cow position: chrX:38852336-38852457 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 81

Conread position: 230-352
Cow position: chrX:15151500-15151375 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 230-352
Cow position: chrX:31372637-31372762 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 30, 80

Conread position: 232-344
Cow position: chrX:36250682-36250567 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 232-350
Cow position: chrX:22811067-22811188 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 233-350
Cow position: chrX:37134455-37134335 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 233-352
Cow position: chrX:865574-865696 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 32, 0

Conread position: 233-352
Cow position: chrX:10445237-10445115 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chrX:10528608-10528486 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chrX:12360066-12360188 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chrX:14782167-14782045 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chrX:15977775-15977653 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 233-352
Cow position: chrX:20020757-20020879 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chrX:20878589-20878467 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chrX:23387360-23387238 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 233-352
Cow position: chrX:23395785-23395907 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 233-352
Cow position: chrX:23452267-23452145 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 233-352
Cow position: chrX:24467946-24467824 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 233-352
Cow position: chrX:25289501-25289379 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chrX:26531151-26531273 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chrX:27318409-27318531 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chrX:29912517-29912639 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chrX:30180746-30180627 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 233-352
Cow position: chrX:30455443-30455322 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 27, 85

Conread position: 233-352
Cow position: chrX:30817091-30816969 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chrX:39185351-39185473 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 233-352
Cow position: chrX:45903355-45903477 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 235-352
Cow position: chrX:5866326-5866446 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 235-352
Cow position: chrX:16854206-16854086 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 235-352
Cow position: chrX:34553924-34554044 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 25, 0

Show alignments to all cow chromosomes.