Cow genome map
| Conread name: | rfat0139_b21.y1 |
| Conread position: | 1-174 |
| Cow position: | chr1:7630469-7630298 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 20, 46 |
| Conread position: | 1-246 |
| Cow position: | chr1:57671281-57671531 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-452 |
| Cow position: | chr1:76860501-76860957 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 127 |
| Conread position: | 1-502 |
| Cow position: | chr1:37541784-37542274 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 151 |
| Conread position: | 1-511 |
| Cow position: | chr1:30883127-30883647 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 33 |
| Conread position: | 1-511 |
| Cow position: | chr1:57743714-57744210 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 32 |
| Conread position: | 1-532 |
| Cow position: | chr1:99572044-99572578 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 60 |
| Conread position: | 1-535 |
| Cow position: | chr1:73762019-73762547 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 142 |
| Conread position: | 2-164 |
| Cow position: | chr1:33442671-33442833 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 19, 55 |
| Conread position: | 2-196 |
| Cow position: | chr1:68368208-68368014 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 23, 53 |
| Conread position: | 2-233 |
| Cow position: | chr1:95765854-95766088 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 2-254 |
| Cow position: | chr1:50273339-50273586 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 132, 18 |
| Conread position: | 2-260 |
| Cow position: | chr1:25780922-25780659 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 2-295 |
| Cow position: | chr1:64717367-64717667 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 2-337 |
| Cow position: | chr1:76847801-76848125 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 19, 64 |
| Conread position: | 2-339 |
| Cow position: | chr1:58384763-58384411 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 20, 206 |
| Conread position: | 2-371 |
| Cow position: | chr1:39249913-39250291 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 2-375 |
| Cow position: | chr1:56857350-56856979 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 29 |
| Conread position: | 2-380 |
| Cow position: | chr1:28283305-28282926 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 23, 118 |
| Conread position: | 2-380 |
| Cow position: | chr1:70534939-70535326 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 154 |
| Conread position: | 2-453 |
| Cow position: | chr1:71920593-71920135 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 218 |
| Conread position: | 2-462 |
| Cow position: | chr1:52054346-52053875 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 304 |
| Conread position: | 2-508 |
| Cow position: | chr1:93413337-93413840 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 107 |
| Conread position: | 2-518 |
| Cow position: | chr1:38422982-38422449 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 229 |
| Conread position: | 2-520 |
| Cow position: | chr1:77166353-77165838 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 55 |
| Conread position: | 2-530 |
| Cow position: | chr1:88266602-88267150 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 64 |
| Conread position: | 2-535 |
| Cow position: | chr1:18136917-18137449 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 19 |
| Conread position: | 2-535 |
| Cow position: | chr1:43567983-43568525 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 485 |
| Conread position: | 2-536 |
| Cow position: | chr1:20078635-20079169 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 107 |
| Conread position: | 2-536 |
| Cow position: | chr1:22481133-22481679 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 491 |
| Conread position: | 2-536 |
| Cow position: | chr1:72997502-72996962 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 99 |
| Conread position: | 2-536 |
| Cow position: | chr1:85529898-85530407 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 92 |
| Conread position: | 2-537 |
| Cow position: | chr1:10005464-10005997 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 216 |
| Conread position: | 2-537 |
| Cow position: | chr1:72803994-72804529 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 105 |
| Conread position: | 2-537 |
| Cow position: | chr1:81925656-81926194 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 60 |
| Conread position: | 3-240 |
| Cow position: | chr1:12885338-12885576 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 74 |
| Conread position: | 3-243 |
| Cow position: | chr1:71939203-71939444 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 18, 224 |
| Conread position: | 3-355 |
| Cow position: | chr1:33537615-33537263 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 213 |
| Conread position: | 3-378 |
| Cow position: | chr1:1106890-1106517 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 18, 29 |
| Conread position: | 3-380 |
| Cow position: | chr1:53487998-53487619 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 81 |
| Conread position: | 3-536 |
| Cow position: | chr1:4277177-4276624 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 52 |
| Conread position: | 3-536 |
| Cow position: | chr1:51875299-51875820 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 3-536 |
| Cow position: | chr1:53309140-53309675 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 98 |
| Conread position: | 4-212 |
| Cow position: | chr1:99278464-99278674 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 4-367 |
| Cow position: | chr1:4226519-4226147 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 126 |
| Conread position: | 4-536 |
| Cow position: | chr1:54390602-54391132 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 137 |
| Conread position: | 6-475 |
| Cow position: | chr1:34363160-34362699 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 8-536 |
| Cow position: | chr1:71676568-71677074 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 109 |
| Conread position: | 10-481 |
| Cow position: | chr1:79113928-79113458 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 54 |
| Conread position: | 12-239 |
| Cow position: | chr1:61662023-61662251 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 5, 135 |
| Conread position: | 12-357 |
| Cow position: | chr1:89263097-89263441 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 274 |
| Conread position: | 12-436 |
| Cow position: | chr1:74039431-74039854 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 9, 41 |
| Conread position: | 12-509 |
| Cow position: | chr1:98789369-98788866 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 230 |
| Conread position: | 18-537 |
| Cow position: | chr1:3668625-3669145 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 37 |
| Conread position: | 20-506 |
| Cow position: | chr1:86613808-86613321 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 45 |
| Conread position: | 21-172 |
| Cow position: | chr1:85838355-85838203 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 25-259 |
| Cow position: | chr1:58087938-58088172 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 9, 107 |
| Conread position: | 26-536 |
| Cow position: | chr1:73384958-73384452 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 173 |
| Conread position: | 31-225 |
| Cow position: | chr1:66357281-66357476 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 45, 35 |
| Conread position: | 32-510 |
| Cow position: | chr1:73404275-73403795 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 111 |
| Conread position: | 41-345 |
| Cow position: | chr1:54163602-54163903 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 46 |
| Conread position: | 42-233 |
| Cow position: | chr1:76670320-76670511 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 92, 104 |
| Conread position: | 43-338 |
| Cow position: | chr1:101853622-101853918 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 140, 116 |
| Conread position: | 50-506 |
| Cow position: | chr1:88389794-88389339 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 17 |
| Conread position: | 52-371 |
| Cow position: | chr1:78073704-78074036 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 11, 173 |
| Conread position: | 55-240 |
| Cow position: | chr1:20308057-20307869 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 124, 90 |
| Conread position: | 61-201 |
| Cow position: | chr1:86363952-86363812 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 62-419 |
| Cow position: | chr1:88530514-88530872 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 89, 20 |
| Conread position: | 67-369 |
| Cow position: | chr1:70064572-70064266 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 263 |
| Conread position: | 78-535 |
| Cow position: | chr1:30440602-30440151 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 100 |
| Conread position: | 87-533 |
| Cow position: | chr1:40482860-40483306 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 328 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 123, 25 |
| Conread position: | 97-509 |
| Cow position: | chr1:101130592-101130997 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 36, 51 |
| Conread position: | 111-371 |
| Cow position: | chr1:53780232-53779964 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 139-477 |
| Cow position: | chr1:9512986-9513328 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 111, 102 |
| Conread position: | 139-529 |
| Cow position: | chr1:23040475-23040084 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 140-332 |
| Cow position: | chr1:40534231-40534423 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 26, 38 |
| Conread position: | 158-341 |
| Cow position: | chr1:38410542-38410356 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 103, 56 |
| Conread position: | 171-535 |
| Cow position: | chr1:31238881-31239246 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 70 |
| Conread position: | 185-444 |
| Cow position: | chr1:3377957-3377702 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 76, 20 |
Show alignments to all cow chromosomes.