Cow genome map


           Conread name:
           rfat0139_b21.y1
        

               Conread position:
               1-174
               

               Cow position:
               
               

               Alignm length:
               177
               

               Alignm identity:
               133
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               20, 46
               

               Conread position:
               1-246
               

               Cow position:
               
               

               Alignm length:
               251
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               1-452
               

               Cow position:
               
               

               Alignm length:
               463
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 127
               

               Conread position:
               1-502
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 151
               

               Conread position:
               1-511
               

               Cow position:
               
               

               Alignm length:
               525
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 33
               

               Conread position:
               1-511
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 32
               

               Conread position:
               1-532
               

               Cow position:
               
               

               Alignm length:
               543
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 60
               

               Conread position:
               1-535
               

               Cow position:
               
               

               Alignm length:
               543
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 142
               

               Conread position:
               2-164
               

               Cow position:
               
               

               Alignm length:
               165
               

               Alignm identity:
               133
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               19, 55
               

               Conread position:
               2-196
               

               Cow position:
               
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               23, 53
               

               Conread position:
               2-233
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               168
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               2-254
               

               Cow position:
               
               

               Alignm length:
               256
               

               Alignm identity:
               188
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               132, 18
               

               Conread position:
               2-260
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               192
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               2-295
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               2-337
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               236
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               19, 64
               

               Conread position:
               2-339
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               239
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               20, 206
               

               Conread position:
               2-371
               

               Cow position:
               
               

               Alignm length:
               379
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               2-375
               

               Cow position:
               
               

               Alignm length:
               381
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               248, 29
               

               Conread position:
               2-380
               

               Cow position:
               
               

               Alignm length:
               386
               

               Alignm identity:
               253
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               23, 118
               

               Conread position:
               2-380
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 154
               

               Conread position:
               2-453
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 218
               

               Conread position:
               2-462
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 304
               

               Conread position:
               2-508
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 107
               

               Conread position:
               2-518
               

               Cow position:
               
               

               Alignm length:
               540
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 229
               

               Conread position:
               2-520
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 55
               

               Conread position:
               2-530
               

               Cow position:
               
               

               Alignm length:
               556
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 64
               

               Conread position:
               2-535
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 19
               

               Conread position:
               2-535
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 485
               

               Conread position:
               2-536
               

               Cow position:
               
               

               Alignm length:
               551
               

               Alignm identity:
               404
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 107
               

               Conread position:
               2-536
               

               Cow position:
               
               

               Alignm length:
               548
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 491
               

               Conread position:
               2-536
               

               Cow position:
               
               

               Alignm length:
               552
               

               Alignm identity:
               399
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 99
               

               Conread position:
               2-536
               

               Cow position:
               
               

               Alignm length:
               540
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 92
               

               Conread position:
               2-537
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 216
               

               Conread position:
               2-537
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 105
               

               Conread position:
               2-537
               

               Cow position:
               
               

               Alignm length:
               552
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 60
               

               Conread position:
               3-240
               

               Cow position:
               
               

               Alignm length:
               241
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 74
               

               Conread position:
               3-243
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               18, 224
               

               Conread position:
               3-355
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 213
               

               Conread position:
               3-378
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               260
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               18, 29
               

               Conread position:
               3-380
               

               Cow position:
               
               

               Alignm length:
               384
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 81
               

               Conread position:
               3-536
               

               Cow position:
               
               

               Alignm length:
               562
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 52
               

               Conread position:
               3-536
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 34
               

               Conread position:
               3-536
               

               Cow position:
               
               

               Alignm length:
               544
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 98
               

               Conread position:
               4-212
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               155
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               4-367
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 126
               

               Conread position:
               4-536
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 137
               

               Conread position:
               6-475
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 36
               

               Conread position:
               8-536
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 109
               

               Conread position:
               10-481
               

               Cow position:
               
               

               Alignm length:
               478
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 54
               

               Conread position:
               12-239
               

               Cow position:
               
               

               Alignm length:
               231
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               5, 135
               

               Conread position:
               12-357
               

               Cow position:
               
               

               Alignm length:
               351
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 274
               

               Conread position:
               12-436
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               283
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               9, 41
               

               Conread position:
               12-509
               

               Cow position:
               
               

               Alignm length:
               514
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 230
               

               Conread position:
               18-537
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 37
               

               Conread position:
               20-506
               

               Cow position:
               
               

               Alignm length:
               500
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 45
               

               Conread position:
               21-172
               

               Cow position:
               
               

               Alignm length:
               153
               

               Alignm identity:
               123
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               25-259
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               9, 107
               

               Conread position:
               26-536
               

               Cow position:
               
               

               Alignm length:
               516
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 173
               

               Conread position:
               31-225
               

               Cow position:
               
               

               Alignm length:
               198
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               45, 35
               

               Conread position:
               32-510
               

               Cow position:
               
               

               Alignm length:
               489
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 111
               

               Conread position:
               41-345
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 46
               

               Conread position:
               42-233
               

               Cow position:
               
               

               Alignm length:
               194
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               92, 104
               

               Conread position:
               43-338
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               140, 116
               

               Conread position:
               50-506
               

               Cow position:
               
               

               Alignm length:
               463
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 17
               

               Conread position:
               52-371
               

               Cow position:
               
               

               Alignm length:
               335
               

               Alignm identity:
               239
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               11, 173
               

               Conread position:
               55-240
               

               Cow position:
               
               

               Alignm length:
               190
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               124, 90
               

               Conread position:
               61-201
               

               Cow position:
               
               

               Alignm length:
               141
               

               Alignm identity:
               104
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               62-419
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               237
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               89, 20
               

               Conread position:
               67-369
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 263
               

               Conread position:
               78-535
               

               Cow position:
               
               

               Alignm length:
               459
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 100
               

               Conread position:
               87-533
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               328
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               123, 25
               

               Conread position:
               97-509
               

               Cow position:
               
               

               Alignm length:
               418
               

               Alignm identity:
               268
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               36, 51
               

               Conread position:
               111-371
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               139-477
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               232
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               111, 102
               

               Conread position:
               139-529
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 15
               

               Conread position:
               140-332
               

               Cow position:
               
               

               Alignm length:
               196
               

               Alignm identity:
               139
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               26, 38
               

               Conread position:
               158-341
               

               Cow position:
               
               

               Alignm length:
               188
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               103, 56
               

               Conread position:
               171-535
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 70
               

               Conread position:
               185-444
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               76, 20
               
Show alignments to all cow chromosomes.