Cow genome map
| Conread name: | rfat0139_b21.y1 |
| Conread position: | 1-334 |
| Cow position: | chr10:35025460-35025119 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 126 |
| Conread position: | 1-334 |
| Cow position: | chr10:38782352-38782685 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 237 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 20, 94 |
| Conread position: | 1-355 |
| Cow position: | chr10:22320770-22320415 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 192 |
| Conread position: | 1-429 |
| Cow position: | chr10:55286493-55286057 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 224 |
| Conread position: | 1-468 |
| Cow position: | chr10:10293831-10293354 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 2-154 |
| Cow position: | chr10:16586626-16586470 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 2-191 |
| Cow position: | chr10:45104047-45103854 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 20, 35 |
| Conread position: | 2-212 |
| Cow position: | chr10:47591227-47591435 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 19, 27 |
| Conread position: | 2-240 |
| Cow position: | chr10:24129100-24128850 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 19, 218 |
| Conread position: | 2-249 |
| Cow position: | chr10:14788278-14788530 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 20, 219 |
| Conread position: | 2-260 |
| Cow position: | chr10:9452110-9452367 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 106 |
| Conread position: | 2-266 |
| Cow position: | chr10:15912018-15911758 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 20, 46 |
| Conread position: | 2-304 |
| Cow position: | chr10:42387905-42388196 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 124, 23 |
| Conread position: | 2-316 |
| Cow position: | chr10:58858639-58858959 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 24, 111 |
| Conread position: | 2-439 |
| Cow position: | chr10:4995344-4995791 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 8 |
| Conread position: | 2-439 |
| Cow position: | chr10:28339882-28339434 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 20, 86 |
| Conread position: | 2-512 |
| Cow position: | chr10:6542021-6541496 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 154 |
| Conread position: | 2-536 |
| Cow position: | chr10:58938095-58938633 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 3-195 |
| Cow position: | chr10:31384833-31384642 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 18, 104 |
| Conread position: | 3-286 |
| Cow position: | chr10:39079956-39079670 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 18, 60 |
| Conread position: | 3-468 |
| Cow position: | chr10:19598096-19598553 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 94 |
| Conread position: | 3-507 |
| Cow position: | chr10:58810224-58810743 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 64 |
| Conread position: | 3-534 |
| Cow position: | chr10:50199522-50198991 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 59 |
| Conread position: | 3-536 |
| Cow position: | chr10:21449650-21450193 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 55 |
| Conread position: | 4-151 |
| Cow position: | chr10:55027477-55027330 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 17, 37 |
| Conread position: | 4-191 |
| Cow position: | chr10:40707071-40706885 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 127 |
| Conread position: | 4-438 |
| Cow position: | chr10:14948308-14947869 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 400 |
| Conread position: | 4-535 |
| Cow position: | chr10:32560661-32560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 112 |
| Conread position: | 4-536 |
| Cow position: | chr10:40400715-40400180 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 63 |
| Conread position: | 5-380 |
| Cow position: | chr10:18389906-18390284 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 137 |
| Conread position: | 5-534 |
| Cow position: | chr10:50315170-50314642 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 83 |
| Conread position: | 5-537 |
| Cow position: | chr10:55011352-55010814 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 130 |
| Conread position: | 6-226 |
| Cow position: | chr10:5015952-5016185 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 6-534 |
| Cow position: | chr10:17922574-17922062 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 68 |
| Conread position: | 7-536 |
| Cow position: | chr10:46172669-46173184 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 105 |
| Conread position: | 11-531 |
| Cow position: | chr10:58601121-58600616 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 87 |
| Conread position: | 13-311 |
| Cow position: | chr10:35040453-35040153 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 238, 8 |
| Conread position: | 19-374 |
| Cow position: | chr10:8469538-8469173 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 292 |
| Conread position: | 19-439 |
| Cow position: | chr10:17653660-17654080 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 291 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 21, 41 |
| Conread position: | 20-510 |
| Cow position: | chr10:20542725-20542245 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 100 |
| Conread position: | 31-525 |
| Cow position: | chr10:25693167-25692664 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 53 |
| Conread position: | 32-453 |
| Cow position: | chr10:59173551-59173972 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 287 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 102, 84 |
| Conread position: | 41-536 |
| Cow position: | chr10:40139746-40140236 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 35 |
| Conread position: | 42-314 |
| Cow position: | chr10:35345653-35345370 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 12, 171 |
| Conread position: | 42-375 |
| Cow position: | chr10:18885739-18886079 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 117, 112 |
| Conread position: | 50-338 |
| Cow position: | chr10:36426516-36426808 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 44 |
| Conread position: | 50-530 |
| Cow position: | chr10:20380487-20380976 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 264 |
| Conread position: | 51-531 |
| Cow position: | chr10:48654350-48653886 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 31 |
| Conread position: | 53-201 |
| Cow position: | chr10:7509286-7509437 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 81, 87 |
| Conread position: | 58-535 |
| Cow position: | chr10:17543542-17544015 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 24 |
| Conread position: | 62-468 |
| Cow position: | chr10:45670412-45670823 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 93 |
| Conread position: | 73-368 |
| Cow position: | chr10:15499516-15499802 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 89, 51 |
| Conread position: | 78-330 |
| Cow position: | chr10:26931261-26931514 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 87-534 |
| Cow position: | chr10:31542099-31541656 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 59 |
| Conread position: | 101-304 |
| Cow position: | chr10:30269891-30270099 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 114 |
| Conread position: | 141-536 |
| Cow position: | chr10:47392001-47392395 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 49, 60 |
| Conread position: | 158-327 |
| Cow position: | chr10:45103749-45103578 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 92, 63 |
| Conread position: | 180-397 |
| Cow position: | chr10:7509733-7509962 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 41, 109 |
| Conread position: | 187-329 |
| Cow position: | chr10:57523265-57523123 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 67, 116 |
Show alignments to all cow chromosomes.