Cow genome map
| Conread name: | rfat0139_b21.y1 |
| Conread position: | 1-212 |
| Cow position: | chr11:42793748-42793958 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 20, 67 |
| Conread position: | 1-373 |
| Cow position: | chr11:2069541-2069158 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 229 |
| Conread position: | 1-526 |
| Cow position: | chr11:21471811-21471286 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 61 |
| Conread position: | 1-534 |
| Cow position: | chr11:10094058-10093527 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 140 |
| Conread position: | 1-534 |
| Cow position: | chr11:27833567-27834112 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 61 |
| Conread position: | 1-534 |
| Cow position: | chr11:80471747-80472308 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 58 |
| Conread position: | 2-212 |
| Cow position: | chr11:40145418-40145215 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 19, 48 |
| Conread position: | 2-238 |
| Cow position: | chr11:64844259-64844022 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 19, 111 |
| Conread position: | 2-240 |
| Cow position: | chr11:67388392-67388164 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 19, 64 |
| Conread position: | 2-275 |
| Cow position: | chr11:30194665-30194393 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 19, 106 |
| Conread position: | 2-279 |
| Cow position: | chr11:84134993-84135276 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 20, 112 |
| Conread position: | 2-309 |
| Cow position: | chr11:21853063-21853377 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 19, 289 |
| Conread position: | 2-329 |
| Cow position: | chr11:77194580-77194892 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 14, 130 |
| Conread position: | 2-350 |
| Cow position: | chr11:12010258-12009913 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 120 |
| Conread position: | 2-506 |
| Cow position: | chr11:28692785-28693295 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 125 |
| Conread position: | 2-533 |
| Cow position: | chr11:49236787-49237316 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 107 |
| Conread position: | 2-534 |
| Cow position: | chr11:57754033-57754558 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 2-536 |
| Cow position: | chr11:7681146-7680608 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 63 |
| Conread position: | 2-536 |
| Cow position: | chr11:49550829-49551377 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 137 |
| Conread position: | 3-202 |
| Cow position: | chr11:20451204-20451008 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 52 |
| Conread position: | 3-360 |
| Cow position: | chr11:13589112-13589460 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 247 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 18, 111 |
| Conread position: | 3-362 |
| Cow position: | chr11:84532080-84532440 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 18, 54 |
| Conread position: | 3-378 |
| Cow position: | chr11:62787848-62787478 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 27 |
| Conread position: | 3-442 |
| Cow position: | chr11:19490728-19490280 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 110 |
| Conread position: | 3-534 |
| Cow position: | chr11:2567488-2568032 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 321 |
| Conread position: | 3-536 |
| Cow position: | chr11:3681658-3682191 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 151 |
| Conread position: | 4-375 |
| Cow position: | chr11:30225905-30226280 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 104 |
| Conread position: | 4-519 |
| Cow position: | chr11:18890492-18889999 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 17 |
| Conread position: | 4-536 |
| Cow position: | chr11:44106868-44106320 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 152 |
| Conread position: | 4-536 |
| Cow position: | chr11:45651741-45652269 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 67 |
| Conread position: | 4-536 |
| Cow position: | chr11:76566651-76566094 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 520 |
| Conread position: | 5-233 |
| Cow position: | chr11:33363277-33363050 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 16, 123 |
| Conread position: | 5-380 |
| Cow position: | chr11:35956986-35956625 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 252 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 16, 63 |
| Conread position: | 8-298 |
| Cow position: | chr11:16118766-16119057 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 216 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 14, 79 |
| Conread position: | 9-536 |
| Cow position: | chr11:48484893-48485430 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 283 |
| Conread position: | 17-212 |
| Cow position: | chr11:59459073-59458882 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 117, 145 |
| Conread position: | 20-217 |
| Cow position: | chr11:54093192-54092996 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 120, 151 |
| Conread position: | 20-510 |
| Cow position: | chr11:1667790-1667296 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 120 |
| Conread position: | 24-191 |
| Cow position: | chr11:12895932-12895761 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 57, 120 |
| Conread position: | 31-222 |
| Cow position: | chr11:60701799-60701607 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 64, 110 |
| Conread position: | 34-534 |
| Cow position: | chr11:9151530-9152019 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 58-537 |
| Cow position: | chr11:28754097-28753623 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 82 |
| Conread position: | 59-537 |
| Cow position: | chr11:27055580-27056067 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 27 |
| Conread position: | 69-504 |
| Cow position: | chr11:3796351-3795915 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 57 |
| Conread position: | 100-351 |
| Cow position: | chr11:81316791-81317045 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 47, 135 |
| Conread position: | 103-507 |
| Cow position: | chr11:2548570-2548159 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 362 |
| Conread position: | 108-447 |
| Cow position: | chr11:27938691-27938342 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 39, 321 |
| Conread position: | 140-534 |
| Cow position: | chr11:52656625-52657010 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 270 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 142, 42 |
| Conread position: | 140-536 |
| Cow position: | chr11:43991745-43992136 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 26 |
| Conread position: | 144-536 |
| Cow position: | chr11:27075095-27074715 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 16, 40 |
| Conread position: | 155-372 |
| Cow position: | chr11:42309148-42309370 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 87, 0 |
Show alignments to all cow chromosomes.