Cow genome map
| Conread name: | rfat0139_b21.y1 |
| Conread position: | 1-339 |
| Cow position: | chr12:12296030-12295688 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 24, 74 |
| Conread position: | 1-475 |
| Cow position: | chr12:5539745-5540197 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 20, 86 |
| Conread position: | 1-510 |
| Cow position: | chr12:15231499-15230981 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 20 |
| Conread position: | 1-518 |
| Cow position: | chr12:30141889-30141365 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 101 |
| Conread position: | 2-191 |
| Cow position: | chr12:22566790-22566599 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 105 |
| Conread position: | 2-292 |
| Cow position: | chr12:31217651-31217360 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 19, 80 |
| Conread position: | 2-299 |
| Cow position: | chr12:6478974-6479267 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 218 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 131, 19 |
| Conread position: | 2-307 |
| Cow position: | chr12:29447274-29446969 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 133, 29 |
| Conread position: | 2-363 |
| Cow position: | chr12:5165851-5165485 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 2-372 |
| Cow position: | chr12:32354775-32354400 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 139, 288 |
| Conread position: | 2-530 |
| Cow position: | chr12:32220569-32220030 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 27 |
| Conread position: | 3-196 |
| Cow position: | chr12:35474859-35474670 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-199 |
| Cow position: | chr12:13260110-13259914 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 18, 138 |
| Conread position: | 3-249 |
| Cow position: | chr12:8642222-8641974 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 19, 131 |
| Conread position: | 3-536 |
| Cow position: | chr12:36340985-36341511 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 18 |
| Conread position: | 4-212 |
| Cow position: | chr12:35111464-35111250 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 164 |
| Conread position: | 4-454 |
| Cow position: | chr12:24558043-24557588 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 17 |
| Conread position: | 4-476 |
| Cow position: | chr12:25313244-25313727 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 160 |
| Conread position: | 12-352 |
| Cow position: | chr12:15760502-15760154 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 320 |
| Conread position: | 20-438 |
| Cow position: | chr12:26823570-26823155 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 64 |
| Conread position: | 34-482 |
| Cow position: | chr12:10486882-10486447 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 95 |
| Conread position: | 36-204 |
| Cow position: | chr12:29326789-29326622 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 98, 16 |
| Conread position: | 36-419 |
| Cow position: | chr12:35311472-35311869 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 57-375 |
| Cow position: | chr12:36205741-36205412 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 50, 114 |
| Conread position: | 64-263 |
| Cow position: | chr12:39283108-39283311 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 68-394 |
| Cow position: | chr12:42795319-42794995 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 145, 70 |
| Conread position: | 140-535 |
| Cow position: | chr12:1472897-1473296 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 267 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 97, 78 |
| Conread position: | 160-535 |
| Cow position: | chr12:32066853-32066493 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 81 |
| Conread position: | 189-375 |
| Cow position: | chr12:35347883-35347698 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 62, 27 |
Show alignments to all cow chromosomes.