Cow genome map
| Conread name: | rfat0139_b21.y1 |
| Conread position: | 1-294 |
| Cow position: | chr13:52077098-52076790 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 20, 187 |
| Conread position: | 1-378 |
| Cow position: | chr13:42201670-42202044 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 260 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 61, 12 |
| Conread position: | 1-380 |
| Cow position: | chr13:45002452-45002834 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 1-535 |
| Cow position: | chr13:18945269-18945797 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 243 |
| Conread position: | 1-536 |
| Cow position: | chr13:1882249-1882787 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 73 |
| Conread position: | 2-212 |
| Cow position: | chr13:19016307-19016515 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 19, 84 |
| Conread position: | 2-239 |
| Cow position: | chr13:47189278-47189041 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 20, 31 |
| Conread position: | 2-381 |
| Cow position: | chr13:26173085-26173470 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 124 |
| Conread position: | 2-453 |
| Cow position: | chr13:17485850-17485392 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 204 |
| Conread position: | 2-478 |
| Cow position: | chr13:55405961-55405490 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 2-524 |
| Cow position: | chr13:17252691-17253211 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 171 |
| Conread position: | 2-536 |
| Cow position: | chr13:3015445-3014897 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 161 |
| Conread position: | 2-536 |
| Cow position: | chr13:10733236-10732706 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 27 |
| Conread position: | 2-536 |
| Cow position: | chr13:23266569-23267111 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 154 |
| Conread position: | 2-536 |
| Cow position: | chr13:26986658-26987191 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 29 |
| Conread position: | 2-537 |
| Cow position: | chr13:34298843-34298300 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 56 |
| Conread position: | 3-260 |
| Cow position: | chr13:42071876-42072126 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 3-260 |
| Cow position: | chr13:55604267-55604524 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 49, 136 |
| Conread position: | 3-374 |
| Cow position: | chr13:18398128-18398483 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 181 |
| Conread position: | 3-439 |
| Cow position: | chr13:11252857-11253284 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 39 |
| Conread position: | 3-444 |
| Cow position: | chr13:18815436-18815893 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 40 |
| Conread position: | 3-536 |
| Cow position: | chr13:22276049-22275519 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 106 |
| Conread position: | 3-536 |
| Cow position: | chr13:32319940-32320464 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 40 |
| Conread position: | 4-165 |
| Cow position: | chr13:3480491-3480647 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 4-534 |
| Cow position: | chr13:21764598-21764076 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 37 |
| Conread position: | 32-316 |
| Cow position: | chr13:16671521-16671242 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 199, 41 |
| Conread position: | 42-536 |
| Cow position: | chr13:1442613-1442114 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 71 |
| Conread position: | 43-462 |
| Cow position: | chr13:18097401-18097830 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 19 |
| Conread position: | 45-536 |
| Cow position: | chr13:18761043-18761543 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 11 |
| Conread position: | 51-458 |
| Cow position: | chr13:24374370-24373937 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 76, 27 |
| Conread position: | 55-337 |
| Cow position: | chr13:19264641-19264929 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 69, 88 |
| Conread position: | 55-510 |
| Cow position: | chr13:25891567-25891121 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 5 |
| Conread position: | 64-512 |
| Cow position: | chr13:30280122-30279668 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 49 |
| Conread position: | 80-366 |
| Cow position: | chr13:43383588-43383300 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 47, 137 |
| Conread position: | 85-427 |
| Cow position: | chr13:46427899-46427549 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 237 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 55, 135 |
| Conread position: | 108-380 |
| Cow position: | chr13:43045403-43045128 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 21, 16 |
| Conread position: | 141-444 |
| Cow position: | chr13:34762869-34763167 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 249-528 |
| Cow position: | chr13:24237540-24237259 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 53, 204 |
Show alignments to all cow chromosomes.