Cow genome map

Conread name: rfat0139_b21.y1

Conread position: 1-207
Cow position: chr14:25363302-25363509 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 155
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 20, 83

Conread position: 1-257
Cow position: chr14:30417336-30417588 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 190
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 146, 20

Conread position: 1-342
Cow position: chr14:36109702-36110037 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 60

Conread position: 1-382
Cow position: chr14:35001143-35000774 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 262
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 20, 56

Conread position: 1-420
Cow position: chr14:33834876-33835306 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 83

Conread position: 1-422
Cow position: chr14:31932880-31933311 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 289
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 20, 49

Conread position: 1-535
Cow position: chr14:25430784-25430237 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 172

Conread position: 1-536
Cow position: chr14:44584373-44583828 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 117

Conread position: 1-536
Cow position: chr14:49219466-49218929 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 96

Conread position: 2-180
Cow position: chr14:41488600-41488777 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 8, 13

Conread position: 2-245
Cow position: chr14:38016683-38016438 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 167
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 20, 32

Conread position: 2-260
Cow position: chr14:17651088-17650828 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 139

Conread position: 2-304
Cow position: chr14:42849468-42849777 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 298

Conread position: 2-321
Cow position: chr14:32580408-32580089 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 221
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 20, 29

Conread position: 2-345
Cow position: chr14:12951252-12950905 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 167

Conread position: 2-360
Cow position: chr14:8902282-8901920 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 257
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 19, 159

Conread position: 2-449
Cow position: chr14:26449392-26449841 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 300
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 132, 82

Conread position: 2-485
Cow position: chr14:48851014-48851527 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 329
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 24, 507

Conread position: 2-510
Cow position: chr14:39301593-39301083 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 55

Conread position: 2-515
Cow position: chr14:35604216-35603699 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 98

Conread position: 2-529
Cow position: chr14:11564668-11564132 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 131

Conread position: 2-531
Cow position: chr14:47937977-47938499 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 214

Conread position: 2-534
Cow position: chr14:14420271-14420814 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 138

Conread position: 2-536
Cow position: chr14:13282914-13282379 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 65

Conread position: 2-536
Cow position: chr14:37136942-37136397 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 304

Conread position: 2-536
Cow position: chr14:46549259-46548731 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 18

Conread position: 3-272
Cow position: chr14:30131517-30131249 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 159
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 19, 40

Conread position: 3-352
Cow position: chr14:47645557-47645204 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 63

Conread position: 3-419
Cow position: chr14:32059892-32060302 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 291
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 131, 17

Conread position: 3-444
Cow position: chr14:13416411-13415971 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 64

Conread position: 3-485
Cow position: chr14:23229665-23230128 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 320
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 18, 78

Conread position: 3-531
Cow position: chr14:29709048-29708550 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 356
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 131, 16

Conread position: 4-212
Cow position: chr14:24113139-24113343 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 26, 103

Conread position: 4-212
Cow position: chr14:35361381-35361586 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 80, 27

Conread position: 4-303
Cow position: chr14:29568957-29569249 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 18, 80

Conread position: 4-332
Cow position: chr14:13092947-13092612 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 228
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 13, 63

Conread position: 4-380
Cow position: chr14:17610941-17610562 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 57

Conread position: 5-519
Cow position: chr14:38150253-38149728 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 176

Conread position: 6-468
Cow position: chr14:23626081-23626548 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 301
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 26, 340

Conread position: 6-491
Cow position: chr14:47593482-47592987 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 79

Conread position: 6-536
Cow position: chr14:20706811-20706283 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 188

Conread position: 7-512
Cow position: chr14:45238464-45237943 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 135

Conread position: 9-279
Cow position: chr14:38741618-38741885 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 202
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 12, 41

Conread position: 12-537
Cow position: chr14:45192648-45192118 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 230

Conread position: 20-504
Cow position: chr14:18323056-18322572 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 114

Conread position: 24-258
Cow position: chr14:44712024-44711789 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 158
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 226, 102

Conread position: 24-367
Cow position: chr14:20673495-20673834 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 236
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 212, 69

Conread position: 25-181
Cow position: chr14:21746312-21746155 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 33, 93

Conread position: 31-442
Cow position: chr14:31400385-31400801 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 108

Conread position: 32-536
Cow position: chr14:14030299-14030810 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 160

Conread position: 34-492
Cow position: chr14:14076192-14075745 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 52

Conread position: 34-536
Cow position: chr14:34055594-34055094 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 101

Conread position: 36-537
Cow position: chr14:30659381-30659876 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 149

Conread position: 43-380
Cow position: chr14:7598857-7598521 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 81

Conread position: 47-537
Cow position: chr14:25234675-25235157 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 94

Conread position: 94-534
Cow position: chr14:48146923-48147352 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 120

Conread position: 101-471
Cow position: chr14:41962553-41962934 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 251
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 30, 135

Show alignments to all cow chromosomes.