Cow genome map
| Conread name: | rfat0139_b21.y1 |
| Conread position: | 1-298 |
| Cow position: | chr16:53509741-53510038 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 20, 75 |
| Conread position: | 1-419 |
| Cow position: | chr16:49388075-49387651 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 74 |
| Conread position: | 1-536 |
| Cow position: | chr16:25263388-25262861 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 15 |
| Conread position: | 2-212 |
| Cow position: | chr16:44219393-44219193 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 16, 54 |
| Conread position: | 2-215 |
| Cow position: | chr16:9417653-9417437 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 2-259 |
| Cow position: | chr16:28696355-28696623 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 2-291 |
| Cow position: | chr16:5747314-5747600 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 19, 214 |
| Conread position: | 2-312 |
| Cow position: | chr16:29512564-29512248 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 15, 49 |
| Conread position: | 2-323 |
| Cow position: | chr16:5632224-5632548 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 139 |
| Conread position: | 2-327 |
| Cow position: | chr16:46525134-46525440 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 23, 86 |
| Conread position: | 2-333 |
| Cow position: | chr16:42733497-42733835 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 160 |
| Conread position: | 2-351 |
| Cow position: | chr16:51997557-51997913 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 19, 32 |
| Conread position: | 2-366 |
| Cow position: | chr16:7457197-7457565 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 14, 115 |
| Conread position: | 2-437 |
| Cow position: | chr16:25893297-25892856 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 314 |
| Conread position: | 2-452 |
| Cow position: | chr16:6265688-6266144 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 137 |
| Conread position: | 2-519 |
| Cow position: | chr16:340545-340044 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 112 |
| Conread position: | 2-531 |
| Cow position: | chr16:13043028-13042495 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 141 |
| Conread position: | 2-534 |
| Cow position: | chr16:52527020-52526479 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 2-536 |
| Cow position: | chr16:43844189-43844711 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 96 |
| Conread position: | 3-199 |
| Cow position: | chr16:7566856-7566657 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 3-510 |
| Cow position: | chr16:38177553-38177067 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 340 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 18, 126 |
| Conread position: | 3-536 |
| Cow position: | chr16:25954803-25955332 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 3-536 |
| Cow position: | chr16:56913450-56913984 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 318 |
| Conread position: | 4-453 |
| Cow position: | chr16:12018547-12018097 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 54 |
| Conread position: | 5-312 |
| Cow position: | chr16:25743486-25743177 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 6-212 |
| Cow position: | chr16:43710855-43710647 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 15, 169 |
| Conread position: | 6-536 |
| Cow position: | chr16:37442756-37443282 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 27 |
| Conread position: | 10-467 |
| Cow position: | chr16:52856065-52856529 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 316 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 11, 44 |
| Conread position: | 24-536 |
| Cow position: | chr16:41683529-41684057 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 419 |
| Conread position: | 26-261 |
| Cow position: | chr16:26975439-26975675 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 108, 30 |
| Conread position: | 28-368 |
| Cow position: | chr16:2305126-2304775 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 12, 122 |
| Conread position: | 34-536 |
| Cow position: | chr16:44189132-44189642 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 178 |
| Conread position: | 36-490 |
| Cow position: | chr16:9226347-9225900 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 24 |
| Conread position: | 45-530 |
| Cow position: | chr16:47476718-47476260 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 117 |
| Conread position: | 47-535 |
| Cow position: | chr16:9025460-9024971 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 26 |
| Conread position: | 76-502 |
| Cow position: | chr16:13777611-13777190 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 87 |
| Conread position: | 82-319 |
| Cow position: | chr16:29206301-29206539 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 52, 172 |
| Conread position: | 83-536 |
| Cow position: | chr16:52524999-52524544 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 11 |
| Conread position: | 102-380 |
| Cow position: | chr16:24061823-24062096 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 205 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 158, 32 |
| Conread position: | 139-530 |
| Cow position: | chr16:27010829-27010430 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 53 |
| Conread position: | 140-536 |
| Cow position: | chr16:34410712-34411106 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 17 |
| Conread position: | 171-531 |
| Cow position: | chr16:26656697-26656348 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 238 |
| Conread position: | 183-536 |
| Cow position: | chr16:4846057-4846417 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 8 |
Show alignments to all cow chromosomes.