Cow genome map

Conread name: rfat0139_b21.y1

Conread position: 1-374
Cow position: chr17:2698903-2698522 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 57

Conread position: 1-486
Cow position: chr17:19369793-19369300 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 144

Conread position: 2-183
Cow position: chr17:28772262-28772443 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 147
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 131, 19

Conread position: 2-184
Cow position: chr17:38701215-38701039 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 2-199
Cow position: chr17:35620158-35620352 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 151
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 132, 12

Conread position: 2-226
Cow position: chr17:19133471-19133694 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 137

Conread position: 2-238
Cow position: chr17:12477217-12476984 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 175
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 19, 127

Conread position: 2-240
Cow position: chr17:15701354-15701588 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 169
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 20, 101

Conread position: 2-311
Cow position: chr17:16416732-16417043 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 216

Conread position: 2-380
Cow position: chr17:17086691-17087057 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 255
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 131, 26

Conread position: 2-438
Cow position: chr17:8067898-8068326 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 382, 19

Conread position: 2-450
Cow position: chr17:18198703-18198244 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 2-528
Cow position: chr17:23722967-23722431 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 146

Conread position: 2-531
Cow position: chr17:26173718-26173229 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 353
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 20, 66

Conread position: 2-536
Cow position: chr17:22563493-22562951 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 154

Conread position: 2-537
Cow position: chr17:158641-158088 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 175

Conread position: 2-537
Cow position: chr17:30413317-30412772 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 490

Conread position: 3-333
Cow position: chr17:34003934-34004289 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 244
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 19, 65

Conread position: 3-535
Cow position: chr17:3315437-3314910 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 71

Conread position: 3-537
Cow position: chr17:2179188-2178672 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 16

Conread position: 3-537
Cow position: chr17:20643057-20642518 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 86

Conread position: 4-339
Cow position: chr17:40282349-40282019 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 18

Conread position: 4-346
Cow position: chr17:8351841-8351496 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 237
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 18, 109

Conread position: 4-459
Cow position: chr17:23337705-23338170 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 309
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 17, 115

Conread position: 4-537
Cow position: chr17:13935800-13936329 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 121

Conread position: 5-534
Cow position: chr17:17133677-17133152 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 27

Conread position: 7-260
Cow position: chr17:24312469-24312213 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 191
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 15, 62

Conread position: 17-391
Cow position: chr17:9001652-9001300 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 272
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 233, 71

Conread position: 24-536
Cow position: chr17:20055443-20054942 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 39

Conread position: 25-348
Cow position: chr17:32407360-32407686 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 6

Conread position: 32-536
Cow position: chr17:19405996-19406492 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 80

Conread position: 34-536
Cow position: chr17:241611-241095 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 183

Conread position: 52-536
Cow position: chr17:31310942-31311423 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 74

Conread position: 59-438
Cow position: chr17:3237702-3237330 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 265
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 63, 82

Conread position: 120-537
Cow position: chr17:11025131-11024702 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 19

Conread position: 163-534
Cow position: chr17:21066485-21066860 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 53

Conread position: 166-537
Cow position: chr17:24292817-24292440 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 114

Conread position: 186-434
Cow position: chr17:4941046-4941304 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 187
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 63, 246

Show alignments to all cow chromosomes.